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European Physical Journal E

Volumn 36, Issue 5, 2013, Pages

Structure and mechanism of maximum stability of isolated alpha-helical protein domains at a critical length scale

(3) Qin, Zhao a Fabre, Andrea a Buehler, Markus J a

a Massachusetts Institute of Technology (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA-HELICAL PROTEINS; BIO-INSPIRED MATERIALS; BIOLOGICAL PROPERTIES; CONTROLLING PARAMETERS; CRITICAL LENGTH SCALE; MOLECULAR SIMULATIONS; STATISTICAL DISTRIBUTION; THERMODYNAMICAL ANALYSIS;

AMINO ACIDS; PROTEIN FOLDING;

PROTEINS;

PROTEIN;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; PROTEIN MOTIF; PROTEIN STABILITY; PROTEIN TERTIARY STRUCTURE; PROTEIN UNFOLDING;

AMINO ACID MOTIFS; MODELS, MOLECULAR; PROTEIN STABILITY; PROTEIN STRUCTURE, TERTIARY; PROTEIN UNFOLDING; PROTEINS;

EID: 84879388441 PISSN: 12928941 EISSN: 1292895X Source Type: Journal
DOI: 10.1140/epje/i2013-13053-8 Document Type: Article

Times cited : (23)

References (44)

1
- 36949091243
- 1960Natur.185.422K 10.1038/185422a0
- J.C. Kendrew, R.E. Dickerson, B.E. Strandberg, R.G. Hart, D.R. Davies, D.C. Phillips, V.C. Shore, Nature 185, 422 (1960)
- (1960) Nature , vol.185 , pp. 422
- Kendrew, J.C.¹ Dickerson, R.E.² Strandberg, B.E.³ Hart, R.G.⁴ Davies, D.R.⁵ Phillips, D.C.⁶ Shore, V.C.⁷

2
- 36749062973
- 2007PNAS.10416410A 10.1073/pnas.0705759104
- T. Ackbarow, X. Chen, S. Keten, M.J. Buehler, Proc. Natl. Acad. Sci. U.S.A. 104, 16410 (2007)
- (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 16410
- Ackbarow, T.¹ Chen, X.² Keten, S.³ Buehler, M.J.⁴

3
- 76549252207
- 1951PNAS.37.205P 10.1073/pnas.37.4.205
- L. Pauling, R.B. Corey, H.R. Branson, Proc. Natl. Acad. Sci. U.S.A. 37, 205 (1951)
- (1951) Proc. Natl. Acad. Sci. U.S.A. , vol.37 , pp. 205
- Pauling, L.¹ Corey, R.B.² Branson, H.R.³

4
- 77952330147
- 2010PhRvL.104s8304Q 10.1103/PhysRevLett.104.198304
- Z. Qin, M.J. Buehler, Phys. Rev. Lett. 104, 198304 (2010)
- (2010) Phys. Rev. Lett. , vol.104 , pp. 198304
- Qin, Z.¹ Buehler, M.J.²

5
- 70350248115
- 10.1142/S1758825109000058
- Z. Qin, S. Cranford, T. Ackbarow, M.J. Buehler, Int. J. Appl. Mech. 1, 85 (2009)
- (2009) Int. J. Appl. Mech. , vol.1 , pp. 85
- Qin, Z.¹ Cranford, S.² Ackbarow, T.³ Buehler, M.J.⁴

6
- 60949107887
- 2009NatMa.8.175B 10.1038/nmat2387
- M.J. Buehler, Y.C. Yung, Nat. Mater. 8, 175 (2009)
- (2009) Nat. Mater. , vol.8 , pp. 175
- Buehler, M.J.¹ Yung, Y.C.²

7
- 0020321767
- 1982Sci.216.136P 10.1126/science.6801762
- S.B. Prusiner, Science 216, 136 (1982)
- (1982) Science , vol.216 , pp. 136
- Prusiner, S.B.¹

8
- 23944490117
- 10.1038/nrg1672
- M.A. DePristo, D.M. Weinreich, D.L. Hartl, Nat. Rev. Genet. 6, 678 (2005)
- (2005) Nat. Rev. Genet. , vol.6 , pp. 678
- Depristo, M.A.¹ Weinreich, D.M.² Hartl, D.L.³

9
- 0027332116
- 1993PNAS.9010962P 10.1073/pnas.90.23.10962
- K.M. Pan, M. Baldwin, J. Nguyen, M. Gasset, A. Serban, D. Groth, I. Mehlhorn, Z.W. Huang, R.J. Fletterick, F.E. Cohen, S.B. Prusiner, Proc. Nat. Acad. Sci. U.S.A. 90, 10962 (1993)
- (1993) Proc. Nat. Acad. Sci. U.S.A. , vol.90 , pp. 10962
- Pan, K.M.¹ Baldwin, M.² Nguyen, J.³ Gasset, M.⁴ Serban, A.⁵ Groth, D.⁶ Mehlhorn, I.⁷ Huang, Z.W.⁸ Fletterick, R.J.⁹ Cohen, F.E.¹⁰ Prusiner, S.B.¹¹

10
- 0031660702
- 1998BpJ.75.1935K 10.1016/S0006-3495(98)77634-9
- S. Kumar, M. Bansal, Biophys. J. 75, 1935 (1998)
- (1998) Biophys. J. , vol.75 , pp. 1935
- Kumar, S.¹ Bansal, M.²

11
- 0033550318
- 10.1006/jmbi.1999.3206
- S. Penel, R.G. Morrison, R.J. Mortishire-Smith, A.J. Doig, J. Mol. Biol. 293, 1211 (1999)
- (1999) J. Mol. Biol. , vol.293 , pp. 1211
- Penel, S.¹ Morrison, R.G.² Mortishire-Smith, R.J.³ Doig, A.J.⁴

12
- 0020997912
- 10.1002/bip.360221211
- W. Kabsch, C. Sander, Biopolymers 22, 2577 (1983)
- (1983) Biopolymers , vol.22 , pp. 2577
- Kabsch, W.¹ Sander, C.²

13
- 0033954256
- 10.1093/nar/28.1.235
- H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. Shindyalov, P.E. Bourne, Nucl. Acids Res. 28, 235 (2000)
- (2000) Nucl. Acids Res. , vol.28 , pp. 235
- Berman, H.M.¹ Westbrook, J.² Feng, Z.³ Gilliland, G.⁴ Bhat, T.N.⁵ Weissig, H.⁶ Shindyalov, I.N.⁷ Bourne, P.E.⁸

14
- 0028174310
- 1994Natur.369.248S 10.1038/369248a0
- A. Sali, E. Shakhnovich, M. Karplus, Nature 369, 248 (1994)
- (1994) Nature , vol.369 , pp. 248
- Sali, A.¹ Shakhnovich, E.² Karplus, M.³

15
- 0030789351
- 10.1021/bi9704764
- P.A. Thompson, W.A. Eaton, J. Hofrichter, Biochemistry 36, 9200 (1997)
- (1997) Biochemistry , vol.36 , pp. 9200
- Thompson, P.A.¹ Eaton, W.A.² Hofrichter, J.³

16
- 0028447768
- 10.1038/nsb0694-399
- V. Munoz, L. Serrano, Nat. Struct. Biol. 1, 399 (1994)
- (1994) Nat. Struct. Biol. , vol.1 , pp. 399
- Munoz, V.¹ Serrano, L.²

17
- 3042636290
- 10.1021/jp049896a
- U.R. Doshi, V. Munoz, J. Phys. Chem. B 108, 8497 (2004)
- (2004) J. Phys. Chem. B , vol.108 , pp. 8497
- Doshi, U.R.¹ Munoz, V.²

18
- 60849130700
- 2009PNAS.106.1299M 10.1073/pnas.0812577106
- V. Munoz, R. Ramanathan, Proc. Natl. Acad. Sci. U.S.A. 106, 1299 (2009)
- (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 1299
- Munoz, V.¹ Ramanathan, R.²

19
- 0000333671
- 1961JChPh.34.1963L 10.1063/1.1731802
- S. Lifson, A. Roig, J. Chem. Phys. 34, 1963 (1961)
- (1961) J. Chem. Phys. , vol.34 , pp. 1963
- Lifson, S.¹ Roig, A.²

20
- 84855716971
- 10.1021/ct200744s
- A. Vitalis, A. Caflisch, J. Chem. Theor. Comput. 8, 363 (2012)
- (2012) J. Chem. Theor. Comput. , vol.8 , pp. 363
- Vitalis, A.¹ Caflisch, A.²

21
- 74949104360
- 2010JPCM.22c5102B 10.1088/0953-8984/22/3/035102
- J. Bertaud, J. Hester, D.D. Jimenez, M.J. Buehler, J. Phys.: Condens. Matter 22, 035102 (2010)
- (2010) J. Phys.: Condens. Matter , vol.22 , pp. 035102
- Bertaud, J.¹ Hester, J.² Jimenez, D.D.³ Buehler, M.J.⁴

22
- 0000668407
- 1959JChPh.31.526Z 10.1063/1.1730390
- B.H. Zimm, J.K. Bragg, J. Chem. Phys. 31, 526 (1959)
- (1959) J. Chem. Phys. , vol.31 , pp. 526
- Zimm, B.H.¹ Bragg, J.K.²

23
- 33646931471
- 10.1021/cr040425u
- E. Shakhnovich, Chem. Rev. 106, 1559 (2006)
- (2006) Chem. Rev. , vol.106 , pp. 1559
- Shakhnovich, E.¹

24
- 67749106309
- 10.1021/ja808136x
- K. Ghosh, K.A. Dill, J. Am. Chem. Soc. 131, 2306 (2009)
- (2009) J. Am. Chem. Soc. , vol.131 , pp. 2306
- Ghosh, K.¹ Dill, K.A.²

25
- 2442581510
- 10.1002/prot.20072
- R. Burioni, D. Cassi, F. Cecconi, A. Vulpiani, Proteins 55, 529 (2004)
- (2004) Proteins , vol.55 , pp. 529
- Burioni, R.¹ Cassi, D.² Cecconi, F.³ Vulpiani, A.⁴

26
- 70350536555
- 2009PLoSO.4.7296D 10.1371/journal.pone.0007296
- M. de Leeuw, S. Reuveni, J. Klafter, R. Granek, PLoS ONE 4, e7296 (2009)
- (2009) PLoS ONE , vol.4 , pp. 7296
- De Leeuw, M.¹ Reuveni, S.² Klafter, J.³ Granek, R.⁴

27
- 44949165528
- 2407499 10.1371/journal.pcbi.1000070
- D.U. Ferreiro, A.M. Walczak, E.A. Komives, P.G. Wolynes, Plos Comput. Biol. 4, e1000070 (2008)
- (2008) Plos Comput. Biol. , vol.4 , pp. 1000070
- Ferreiro, D.U.¹ Walczak, A.M.² Komives, E.A.³ Wolynes, P.G.⁴

28
- 0033613906
- 10.1006/jmbi.1998.2374
- M. Karplus, Y.Q. Zhou, D. Vitkup, J. Mol. Biol. 285, 1371 (1999)
- (1999) J. Mol. Biol. , vol.285 , pp. 1371
- Karplus, M.¹ Zhou, Y.Q.² Vitkup, D.³

29
- 0004056428
- Pergamon Press, Oxford, New York
- L.D. Landau, E.M. Lifshitz, L.P. Pitaevskii, Statistical Physics, 3d revision and English edition (Pergamon Press, Oxford, New York, 1980)
- (1980) Statistical Physics, 3d Revision and English Edition
- Landau, L.D.¹ Lifshitz, E.M.² Pitaevskii, L.P.³

30
- 0033135638
- 10.1002/(SICI)1097-0134(19990501)35:2<133: AID-PROT1>3.0.CO;2-N
- T. Lazaridis, M. Karplus, Proteins-Struct. Funct. Genet. 35, 133 (1999)
- (1999) Proteins-Struct. Funct. Genet. , vol.35 , pp. 133
- Lazaridis, T.¹ Karplus, M.²

31
- 69449083856
- 2009PNAS.10613307B 10.1073/pnas.0902312106
- M. Bertz, M. Wilmanns, M. Rief, Proc. Natl. Acad. Sci. U.S.A. 106, 13307 (2009)
- (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 13307
- Bertz, M.¹ Wilmanns, M.² Rief, M.³

32
- 0004204457
- Garland Pub., New York
- C.-I. Brändén, J. Tooze, Introduction to Protein Structure, 2nd edition (Garland Pub., New York, 1999)
- (1999) Introduction to Protein Structure, 2nd Edition
- Brändén, C.I.¹

33
- 27344436659
- 10.1002/jcc.20289
- J.C. Phillips, R. Braun, W. Wang, J. Gumbart, E. Tajkhorshid, E. Villa, C. Chipot, R.D. Skeel, L. Kale, K. Schulten, J. Comput. Chem. 26, 1781 (2005)
- (2005) J. Comput. Chem. , vol.26 , pp. 1781
- Phillips, J.C.¹ Braun, R.² Wang, W.³ Gumbart, J.⁴ Tajkhorshid, E.⁵ Villa, E.⁶ Chipot, C.⁷ Skeel, R.D.⁸ Kale, L.⁹ Schulten, K.¹⁰

34
- 38349091489
- 2008PhRvL.100b0603B 10.1103/PhysRevLett.100.020603
- A. Barducci, G. Bussi, M. Parrinello, Phys. Rev. Lett. 100, 020603 (2008)
- (2008) Phys. Rev. Lett. , vol.100 , pp. 020603
- Barducci, A.¹ Bussi, G.² Parrinello, M.³

35
- 15544363835
- 1995MaMol.28.8759M 10.1021/ma00130a008
- J.F. Marko, E.D. Siggia, Macromolecules 28, 8759 (1995)
- (1995) Macromolecules , vol.28 , pp. 8759
- Marko, J.F.¹ Siggia, E.D.²

36
- 84967444017
- World Scientific, Hackensack, NJ
- J.R.C.v.d. Maarel, Introduction to Biopolymer Physics (World Scientific, Hackensack, NJ, 2008)
- (2008) Introduction to Biopolymer Physics
- Maarel, J.R.C.V.D.¹

37
- 70349328122
- 10.1243/03093247JSA533
- J. Bertaud, Z. Qin, M.J. Buehler, J. Strain Anal. Engin. Design 44, 517 (2009)
- (2009) J. Strain Anal. Engin. Design , vol.44 , pp. 517
- Bertaud, J.¹ Qin, Z.² Buehler, M.J.³

38
- 43449096360
- 2008PhRvL.100s8301K 10.1103/PhysRevLett.100.198301
- S. Keten, M.J. Buehler, Phys. Rev. Lett. 100, 198301 (2008)
- (2008) Phys. Rev. Lett. , vol.100 , pp. 198301
- Keten, S.¹ Buehler, M.J.²

39
- 69349100797
- 2009CoPhC.180.1961B 10.1016/j.cpc.2009.05.011
- M. Bonomi, D. Branduardi, G. Bussi, C. Camilloni, D. Provasi, P. Raiteri, D. Donadio, F. Marinelli, F. Pietrucci, R.A. Broglia, M. Parrinello, Comput. Phys. Commun. 180, 1961 (2009)
- (2009) Comput. Phys. Commun. , vol.180 , pp. 1961
- Bonomi, M.¹ Branduardi, D.² Bussi, G.³ Camilloni, C.⁴ Provasi, D.⁵ Raiteri, P.⁶ Donadio, D.⁷ Marinelli, F.⁸ Pietrucci, F.⁹ Broglia, R.A.¹⁰ Parrinello, M.¹¹

40
- 0024278714
- 10.1016/0022-2836(88)90641-9
- D.J. Barlow, J.M. Thornton, J. Mol. Biol. 201, 601 (1988)
- (1988) J. Mol. Biol. , vol.201 , pp. 601
- Barlow, D.J.¹ Thornton, J.M.²

41
- 84864226320
- 10.1021/jp300788e
- S.M. Kreuzer, R. Elber, T.J. Moon, J. Phys. Chem. B 116, 8662 (2012)
- (2012) J. Phys. Chem. B , vol.116 , pp. 8662
- Kreuzer, S.M.¹ Elber, R.² Moon, T.J.³

42
- 78649999654
- 10.1002/mats.201000034
- P. Palencar, T. Bleha, Macromol. Theory Simul. 19, 488 (2010)
- (2010) Macromol. Theory Simul. , vol.19 , pp. 488
- Palencar, P.¹ Bleha, T.²

43
- 77949262233
- 2010NatNa.5.172B 10.1038/nnano.2010.28
- M.J. Buehler, Nature Nanotechnol. 5, 172 (2010)
- (2010) Nature Nanotechnol. , vol.5 , pp. 172
- Buehler, M.J.¹

44
- 79960476385
- 10.1146/annurev-bioeng-071910-124651
- P.R. LeDuc, W.C. Messner, J.P. Wikswo, Annu. Rev. Biomed. Engin. 13, 369 (2011)
- (2011) Annu. Rev. Biomed. Engin. , vol.13 , pp. 369
- Leduc, P.R.¹ Messner, W.C.² Wikswo, J.P.³

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