-
1
-
-
18344362394
-
On the use of classical statistical mechanics in the treatment of polymer chain conformation
-
Gø N, Scheraga HA. On the use of classical statistical mechanics in the treatment of polymer chain conformation. Macromolecules 1976;9:535-549.
-
(1976)
Macromolecules
, vol.9
, pp. 535-549
-
-
Gø, N.1
Scheraga, H.A.2
-
2
-
-
0032502839
-
Contact order, transition state placement and the refolding rates of single domain proteins
-
Plaxco KW, Simons KT, Baker D. Contact order, transition state placement and the refolding rates of single domain proteins. J Mol Biol 1999;277:985-994.
-
(1999)
J Mol Biol
, vol.277
, pp. 985-994
-
-
Plaxco, K.W.1
Simons, K.T.2
Baker, D.3
-
3
-
-
0037133574
-
How the folding rate constant of simple, single-domain proteins depends on the number of native contacts
-
Makarov DE, Keller CA, Plaxco KW, Metiu H. How the folding rate constant of simple, single-domain proteins depends on the number of native contacts. Proc Natl Acad Sci USA 2002;99:3535-3539.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 3535-3539
-
-
Makarov, D.E.1
Keller, C.A.2
Plaxco, K.W.3
Metiu, H.4
-
4
-
-
0032734515
-
Experiment and theory highlight role of native state topology in SH3 folding
-
Riddle DS, Grantcharova VP, Santiago JV, Alm E, Ruczinski I, Baker D. Experiment and theory highlight role of native state topology in SH3 folding. Nature Struct Biol 1999;6:1016-1024.
-
(1999)
Nature Struct Biol
, vol.6
, pp. 1016-1024
-
-
Riddle, D.S.1
Grantcharova, V.P.2
Santiago, J.V.3
Alm, E.4
Ruczinski, I.5
Baker, D.6
-
5
-
-
0034604105
-
A surprising simplicity to protein folding
-
Baker D. A surprising simplicity to protein folding. Nature 2000;405:39-42.
-
(2000)
Nature
, vol.405
, pp. 39-42
-
-
Baker, D.1
-
6
-
-
0034685604
-
Topological and energetic factors: What determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins
-
Clementi C, Nymeyer H, Onuchic JN. Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins. J Mol Biol 1998;298: 937-953.
-
(1998)
J Mol Biol
, vol.298
, pp. 937-953
-
-
Clementi, C.1
Nymeyer, H.2
Onuchic, J.N.3
-
7
-
-
0034691149
-
Native topology determines force-induced unfolding pathways in globular proteins
-
Klimov DK, Thirumalai D. Native topology determines force-induced unfolding pathways in globular proteins. Proc Natl Acad Sci USA 2000;97:7254-7259.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 7254-7259
-
-
Klimov, D.K.1
Thirumalai, D.2
-
10
-
-
0034257223
-
Toward an energy function for the contact map representation of proteins
-
Park K, Vendruscolo M, Domany E. Toward an energy function for the contact map representation of proteins. Proteins: Struct Func Gen 2000;40:237-248.
-
(2000)
Proteins: Struct Func Gen
, vol.40
, pp. 237-248
-
-
Park, K.1
Vendruscolo, M.2
Domany, E.3
-
11
-
-
41349118690
-
Small-world view of the amino acids that play a key role in protein folding
-
Vendruscolo M, Dokholyan NV, Paci E, Karplus M. Small-world view of the amino acids that play a key role in protein folding. Phys Rev E 2002;65:061910.
-
(2002)
Phys Rev E
, vol.65
, pp. 061910
-
-
Vendruscolo, M.1
Dokholyan, N.V.2
Paci, E.3
Karplus, M.4
-
13
-
-
0037847500
-
Geometrical approach to protein folding: A tube picture
-
Banavar JR, Maritan A. Geometrical approach to protein folding: a tube picture. Rev Mod Phys 2003;75:23-34.
-
(2003)
Rev Mod Phys
, vol.75
, pp. 23-34
-
-
Banavar, J.R.1
Maritan, A.2
-
15
-
-
0018793861
-
Temperature dependent X-ray diffraction as a probe as of protein structural dynamics
-
Frauenfelder H, Petsko GA, Tsernoglou D. Temperature dependent X-ray diffraction as a probe as of protein structural dynamics. Nature 1979;280:558-563.
-
(1979)
Nature
, vol.280
, pp. 558-563
-
-
Frauenfelder, H.1
Petsko, G.A.2
Tsernoglou, D.3
-
16
-
-
0032574827
-
Dynamics and functions of proteins: The search of general concepts
-
Frauenfelder H, McMahon B. Dynamics and functions of proteins: the search of general concepts. Proc Natl Acad Sci USA 1998;95: 4795-4797.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 4795-4797
-
-
Frauenfelder, H.1
McMahon, B.2
-
17
-
-
0020698476
-
Dynamics of Proteins: Elements and Functions
-
Karplus M, McCammon J. Dynamics of Proteins: Elements and Functions. Ann Rev Biochem 1983;53:263-300.
-
(1983)
Ann Rev Biochem
, vol.53
, pp. 263-300
-
-
Karplus, M.1
McCammon, J.2
-
19
-
-
0022419152
-
Protein normal-mode dynamics; trypsin inhibitor, crambin, ribonuclease, and lysozyme
-
Levitt M, Sanders C, Stern PS. Protein normal-mode dynamics; trypsin inhibitor, crambin, ribonuclease, and lysozyme. J Mol Biol 1985;181:423-447.
-
(1985)
J Mol Biol
, vol.181
, pp. 423-447
-
-
Levitt, M.1
Sanders, C.2
Stern, P.S.3
-
20
-
-
0000197372
-
Low-amplitude elastic motions in proteins from a single-parameter atomic analysis
-
Tirion MM. Low-amplitude elastic motions in proteins from a single-parameter atomic analysis. Phys Rev Lett 1996;77:1905-1908.
-
(1996)
Phys Rev Lett
, vol.77
, pp. 1905-1908
-
-
Tirion, M.M.1
-
21
-
-
0032533790
-
Analysis of domain motion by approximate normal mode calculations
-
Hinsen K. Analysis of domain motion by approximate normal mode calculations. Proteins: Struct Funct Genetics 1999;33:417-429.
-
(1999)
Proteins: Struct Funct Genetics
, vol.33
, pp. 417-429
-
-
Hinsen, K.1
-
22
-
-
0000496772
-
Vibrational dynamics of folded proteins: Significance of slow and fast motions in relation to function and stability
-
Bahar I, Atilgan AR, Demirel MC, Erman B. Vibrational dynamics of folded proteins: significance of slow and fast motions in relation to function and stability. Phys Rev Lett 1998;80:2733-2736.
-
(1998)
Phys Rev Lett
, vol.80
, pp. 2733-2736
-
-
Bahar, I.1
Atilgan, A.R.2
Demirel, M.C.3
Erman, B.4
-
23
-
-
0035132230
-
Anisotropy of fluctuation dynamics of proteins with an elastic network model
-
Atilgan AR, Durell SR, Jernigan RL, Demirel MC, Keskin O, Bahar I. Anisotropy of fluctuation dynamics of proteins with an elastic network model. Biophys J 2001;80:505-515.
-
(2001)
Biophys J
, vol.80
, pp. 505-515
-
-
Atilgan, A.R.1
Durell, S.R.2
Jernigan, R.L.3
Demirel, M.C.4
Keskin, O.5
Bahar, I.6
-
25
-
-
0036073320
-
Crucial stages of protein folding through a solvable model; predicting target sites for enzyme-inhibiting drugs
-
Micheletti C, Cecconi F, Flammini A, Maritan A. Crucial stages of protein folding through a solvable model; predicting target sites for enzyme-inhibiting drugs. Protein Sci 2002;11:1878-1887.
-
(2002)
Protein Sci
, vol.11
, pp. 1878-1887
-
-
Micheletti, C.1
Cecconi, F.2
Flammini, A.3
Maritan, A.4
-
26
-
-
0036385839
-
Elastic properties of proteins: Insight on the folding processes and evolutionary selection of native structures
-
Micheletti C, Lattanzi G, Maritan A. Elastic properties of proteins: insight on the folding processes and evolutionary selection of native structures. J Mol Biol 2002;321:909-921.
-
(2002)
J Mol Biol
, vol.321
, pp. 909-921
-
-
Micheletti, C.1
Lattanzi, G.2
Maritan, A.3
-
27
-
-
0002932259
-
Bemerkung über Umwandlungstemperaturen
-
Peierls RE. Bemerkung über Umwandlungstemperaturen. Helv Phys Acta 1934;7:S81-S83.
-
(1934)
Helv Phys Acta
, vol.7
-
-
Peierls, R.E.1
-
29
-
-
0020186194
-
Density of states on fractals: Fractons
-
Alexander S, Orbach RL. Density of states on fractals: fractons. J Phys Lett 1982;43:625-L631.
-
(1982)
J Phys Lett
, vol.43
, pp. 625-L631
-
-
Alexander, S.1
Orbach, R.L.2
-
30
-
-
0001473928
-
Universal properties of spectral dimension
-
996
-
Burioni R, Cassi D. Universal properties of spectral dimension. Phys Rev Lett 996;76:1091-1093.
-
Phys Rev Lett
, vol.76
, pp. 1091-1093
-
-
Burioni, R.1
Cassi, D.2
-
31
-
-
0001854481
-
Propagating to nonpropagating vibrational modes in amorphous polycarbonate
-
Saviot L, Duval E, Surotsev N, Jal JF, Dianoux AJ. Propagating to nonpropagating vibrational modes in amorphous polycarbonate. Phys Rev B 1999;60:18-21.
-
(1999)
Phys Rev B
, vol.60
, pp. 18-21
-
-
Saviot, L.1
Duval, E.2
Surotsev, N.3
Jal, J.F.4
Dianoux, A.J.5
-
32
-
-
0000134445
-
Vibrational normal-mode spectrum of globular proteins
-
Ben-Avraham D. Vibrational normal-mode spectrum of globular proteins. Phys Rev B 1993;47:14559.
-
(1993)
Phys Rev B
, vol.47
, pp. 14559
-
-
Ben-Avraham, D.1
-
33
-
-
0001058199
-
Low frequency modes in proteins: Use of effective-medium approximation to interpret fractal dimension observed in electron-spin relaxation measurements
-
Elber R, Karplus M. Low frequency modes in proteins: use of effective-medium approximation to interpret fractal dimension observed in electron-spin relaxation measurements. Phys Rev Lett 1986;56:394-397.
-
(1986)
Phys Rev Lett
, vol.56
, pp. 394-397
-
-
Elber, R.1
Karplus, M.2
-
35
-
-
0030623823
-
Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential
-
Bahar I, Atilgan AR, Erman B. Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential. Fold Des 1997;2:173-181.
-
(1997)
Fold Des
, vol.2
, pp. 173-181
-
-
Bahar, I.1
Atilgan, A.R.2
Erman, B.3
-
37
-
-
0035996990
-
Dynamics of proteins in crystal: Comparison of experiment with simple models
-
Kundu S, Melton JS, Sorensen DC, Phillips GN Jr. Dynamics of proteins in crystal: comparison of experiment with simple models. Biophys J 2002;34:723-732.
-
(2002)
Biophys J
, vol.34
, pp. 723-732
-
-
Kundu, S.1
Melton, J.S.2
Sorensen, D.C.3
Phillips Jr., G.N.4
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