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Volumn 25, Issue 1, 2013, Pages 55-68

Mammalian X upregulation is associated with enhanced transcription initiation, RNA half-life, and MOF-mediated H4K16 acetylation

Author keywords

[No Author keywords available]

Indexed keywords

ACETYLTRANSFERASE MALE ABSENT ON THE FIRST; ACYLTRANSFERASE; HISTONE H2AZ; HISTONE H4; HISTONE H4 ACETYLATED AT LYSINE 16; MALE SPECIFIC LETHAL 1; RNA; RNA POLYMERASE II; UNCLASSIFIED DRUG;

EID: 84876420573     PISSN: 15345807     EISSN: 18781551     Source Type: Journal    
DOI: 10.1016/j.devcel.2013.01.028     Document Type: Article
Times cited : (79)

References (59)
  • 2
    • 0033866836 scopus 로고    scopus 로고
    • Activation of transcription through histone H4 acetylation by MOF, an acetyltransferase essential for dosage compensation in Drosophila
    • Akhtar A., Becker P.B. Activation of transcription through histone H4 acetylation by MOF, an acetyltransferase essential for dosage compensation in Drosophila. Mol. Cell 2000, 5:367-375.
    • (2000) Mol. Cell , vol.5 , pp. 367-375
    • Akhtar, A.1    Becker, P.B.2
  • 3
    • 33645530936 scopus 로고    scopus 로고
    • High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome
    • Alekseyenko A.A., Larschan E., Lai W.R., Park P.J., Kuroda M.I. High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome. Genes Dev. 2006, 20:848-857.
    • (2006) Genes Dev. , vol.20 , pp. 848-857
    • Alekseyenko, A.A.1    Larschan, E.2    Lai, W.R.3    Park, P.J.4    Kuroda, M.I.5
  • 4
    • 33847292797 scopus 로고    scopus 로고
    • An unmethylated 3' promoter-proximal region is required for efficient transcription initiation
    • Appanah R., Dickerson D.R., Goyal P., Groudine M., Lorincz M.C. An unmethylated 3' promoter-proximal region is required for efficient transcription initiation. PLoS Genet. 2007, 3:e27.
    • (2007) PLoS Genet. , vol.3
    • Appanah, R.1    Dickerson, D.R.2    Goyal, P.3    Groudine, M.4    Lorincz, M.C.5
  • 6
  • 7
    • 70449641057 scopus 로고    scopus 로고
    • Progression through the RNA polymerase II CTD cycle
    • Buratowski S. Progression through the RNA polymerase II CTD cycle. Mol. Cell 2009, 36:541-546.
    • (2009) Mol. Cell , vol.36 , pp. 541-546
    • Buratowski, S.1
  • 9
    • 84855940430 scopus 로고    scopus 로고
    • Dosage compensation in Drosophila melanogaster: epigenetic fine-tuning of chromosome-wide transcription
    • Conrad T., Akhtar A. Dosage compensation in Drosophila melanogaster: epigenetic fine-tuning of chromosome-wide transcription. Nat. Rev. Genet. 2012, 13:123-134.
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 123-134
    • Conrad, T.1    Akhtar, A.2
  • 10
    • 84864837861 scopus 로고    scopus 로고
    • Drosophila dosage compensation involves enhanced Pol II recruitment to male X-linked promoters
    • Conrad T., Cavalli F.M., Vaquerizas J.M., Luscombe N.M., Akhtar A. Drosophila dosage compensation involves enhanced Pol II recruitment to male X-linked promoters. Science 2012, 337:742-746.
    • (2012) Science , vol.337 , pp. 742-746
    • Conrad, T.1    Cavalli, F.M.2    Vaquerizas, J.M.3    Luscombe, N.M.4    Akhtar, A.5
  • 11
    • 0036208153 scopus 로고    scopus 로고
    • Modulation of ISWI function by site-specific histone acetylation
    • Corona D.F., Clapier C.R., Becker P.B., Tamkun J.W. Modulation of ISWI function by site-specific histone acetylation. EMBO Rep. 2002, 3:242-247.
    • (2002) EMBO Rep. , vol.3 , pp. 242-247
    • Corona, D.F.1    Clapier, C.R.2    Becker, P.B.3    Tamkun, J.W.4
  • 14
    • 84870174108 scopus 로고    scopus 로고
    • Dosage compensation of the sex chromosomes
    • Disteche C.M. Dosage compensation of the sex chromosomes. Annu. Rev. Genet. 2012, 46:537-560.
    • (2012) Annu. Rev. Genet. , vol.46 , pp. 537-560
    • Disteche, C.M.1
  • 15
    • 84857850774 scopus 로고    scopus 로고
    • The MOF-containing NSL complex associates globally with housekeeping genes, but activates only a defined subset
    • Feller C., Prestel M., Hartmann H., Straub T., Söding J., Becker P.B. The MOF-containing NSL complex associates globally with housekeeping genes, but activates only a defined subset. Nucleic Acids Res. 2012, 40:1509-1522.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 1509-1522
    • Feller, C.1    Prestel, M.2    Hartmann, H.3    Straub, T.4    Söding, J.5    Becker, P.B.6
  • 16
    • 68249158456 scopus 로고    scopus 로고
    • Drosophila MSL complex globally acetylates H4K16 on the male X chromosome for dosage compensation
    • Gelbart M.E., Larschan E., Peng S., Park P.J., Kuroda M.I. Drosophila MSL complex globally acetylates H4K16 on the male X chromosome for dosage compensation. Nat. Struct. Mol. Biol. 2009, 16:825-832.
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 825-832
    • Gelbart, M.E.1    Larschan, E.2    Peng, S.3    Park, P.J.4    Kuroda, M.I.5
  • 18
    • 77951169141 scopus 로고    scopus 로고
    • Chromatin remodeling by imitation switch (ISWI) class ATP-dependent remodelers is stimulated by histone variant H2A.Z
    • Goldman J.A., Garlick J.D., Kingston R.E. Chromatin remodeling by imitation switch (ISWI) class ATP-dependent remodelers is stimulated by histone variant H2A.Z. J. Biol. Chem. 2010, 285:4645-4651.
    • (2010) J. Biol. Chem. , vol.285 , pp. 4645-4651
    • Goldman, J.A.1    Garlick, J.D.2    Kingston, R.E.3
  • 21
    • 25844491702 scopus 로고    scopus 로고
    • Global regulation of X chromosomal genes by the MSL complex in Drosophila melanogaster
    • Hamada F.N., Park P.J., Gordadze P.R., Kuroda M.I. Global regulation of X chromosomal genes by the MSL complex in Drosophila melanogaster. Genes Dev. 2005, 19:2289-2294.
    • (2005) Genes Dev. , vol.19 , pp. 2289-2294
    • Hamada, F.N.1    Park, P.J.2    Gordadze, P.R.3    Kuroda, M.I.4
  • 23
    • 79953131815 scopus 로고    scopus 로고
    • SUV420H2-mediated H4K20 trimethylation enforces RNA polymerase II promoter-proximal pausing by blocking hMOF-dependent H4K16 acetylation
    • Kapoor-Vazirani P., Kagey J.D., Vertino P.M. SUV420H2-mediated H4K20 trimethylation enforces RNA polymerase II promoter-proximal pausing by blocking hMOF-dependent H4K16 acetylation. Mol. Cell. Biol. 2011, 31:1594-1609.
    • (2011) Mol. Cell. Biol. , vol.31 , pp. 1594-1609
    • Kapoor-Vazirani, P.1    Kagey, J.D.2    Vertino, P.M.3
  • 24
    • 82255179690 scopus 로고    scopus 로고
    • Evidence for dosage compensation between the X chromosome and autosomes in mammals
    • author reply 1171-1172
    • Kharchenko P.V., Xi R., Park P.J. Evidence for dosage compensation between the X chromosome and autosomes in mammals. Nat. Genet. 2011, 43:1167-1169. author reply 1171-1172.
    • (2011) Nat. Genet. , vol.43 , pp. 1167-1169
    • Kharchenko, P.V.1    Xi, R.2    Park, P.J.3
  • 25
    • 43949085073 scopus 로고    scopus 로고
    • Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila
    • Kind J., Vaquerizas J.M., Gebhardt P., Gentzel M., Luscombe N.M., Bertone P., Akhtar A. Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila. Cell 2008, 133:813-828.
    • (2008) Cell , vol.133 , pp. 813-828
    • Kind, J.1    Vaquerizas, J.M.2    Gebhardt, P.3    Gentzel, M.4    Luscombe, N.M.5    Bertone, P.6    Akhtar, A.7
  • 27
    • 0033615708 scopus 로고    scopus 로고
    • Four evolutionary strata on the human X chromosome
    • Lahn B.T., Page D.C. Four evolutionary strata on the human X chromosome. Science 1999, 286:964-967.
    • (1999) Science , vol.286 , pp. 964-967
    • Lahn, B.T.1    Page, D.C.2
  • 30
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H., Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 31
    • 84864601941 scopus 로고    scopus 로고
    • The histone acetyltransferase MOF is a key regulator of the embryonic stem cell core transcriptional network
    • Li X., Li L., Pandey R., Byun J.S., Gardner K., Qin Z., Dou Y. The histone acetyltransferase MOF is a key regulator of the embryonic stem cell core transcriptional network. Cell Stem Cell 2012, 11:163-178.
    • (2012) Cell Stem Cell , vol.11 , pp. 163-178
    • Li, X.1    Li, L.2    Pandey, R.3    Byun, J.S.4    Gardner, K.5    Qin, Z.6    Dou, Y.7
  • 33
    • 82255170693 scopus 로고    scopus 로고
    • Relative overexpression of X-linked genes in mouse embryonic stem cells is consistent with Ohno's hypothesis
    • author reply 1171-1172
    • Lin H., Halsall J.A., Antczak P., O'Neill L.P., Falciani F., Turner B.M. Relative overexpression of X-linked genes in mouse embryonic stem cells is consistent with Ohno's hypothesis. Nat. Genet. 2011, 43:1169-1170. author reply 1171-1172.
    • (2011) Nat. Genet. , vol.43 , pp. 1169-1170
    • Lin, H.1    Halsall, J.A.2    Antczak, P.3    O'Neill, L.P.4    Falciani, F.5    Turner, B.M.6
  • 34
    • 84863955476 scopus 로고    scopus 로고
    • Expression reduction in mammalian X chromosome evolution refutes Ohno's hypothesis of dosage compensation
    • Lin F., Xing K., Zhang J., He X. Expression reduction in mammalian X chromosome evolution refutes Ohno's hypothesis of dosage compensation. Proc. Natl. Acad. Sci. USA 2012, 109:11752-11757.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 11752-11757
    • Lin, F.1    Xing, K.2    Zhang, J.3    He, X.4
  • 36
    • 80054758182 scopus 로고    scopus 로고
    • Clustered transcripts that escape X inactivation at mouse XqD
    • Lopes A.M., Arnold-Croop S.E., Amorim A., Carrel L. Clustered transcripts that escape X inactivation at mouse XqD. Mamm. Genome 2011, 22:572-582.
    • (2011) Mamm. Genome , vol.22 , pp. 572-582
    • Lopes, A.M.1    Arnold-Croop, S.E.2    Amorim, A.3    Carrel, L.4
  • 37
    • 7144223296 scopus 로고
    • Gene action in the X-chromosome of the mouse (Mus musculus L.)
    • Lyon M.F. Gene action in the X-chromosome of the mouse (Mus musculus L.). Nature 1961, 190:372-373.
    • (1961) Nature , vol.190 , pp. 372-373
    • Lyon, M.F.1
  • 39
    • 77952240927 scopus 로고    scopus 로고
    • Targeting X chromosomes for repression
    • Meyer B.J. Targeting X chromosomes for repression. Curr. Opin. Genet. Dev. 2010, 20:179-189.
    • (2010) Curr. Opin. Genet. Dev. , vol.20 , pp. 179-189
    • Meyer, B.J.1
  • 40
    • 27144510368 scopus 로고    scopus 로고
    • Genome-scale profiling of histone H3.3 replacement patterns
    • Mito Y., Henikoff J.G., Henikoff S. Genome-scale profiling of histone H3.3 replacement patterns. Nat. Genet. 2005, 37:1090-1097.
    • (2005) Nat. Genet. , vol.37 , pp. 1090-1097
    • Mito, Y.1    Henikoff, J.G.2    Henikoff, S.3
  • 41
    • 29444455049 scopus 로고    scopus 로고
    • Dosage compensation of the active X chromosome in mammals
    • Nguyen D.K., Disteche C.M. Dosage compensation of the active X chromosome in mammals. Nat. Genet. 2006, 38:47-53.
    • (2006) Nat. Genet. , vol.38 , pp. 47-53
    • Nguyen, D.K.1    Disteche, C.M.2
  • 43
    • 84859448442 scopus 로고    scopus 로고
    • Mammalian X chromosome inactivation evolved as a dosage-compensation mechanism for dosage-sensitive genes on the X chromosome
    • Pessia E., Makino T., Bailly-Bechet M., McLysaght A., Marais G.A. Mammalian X chromosome inactivation evolved as a dosage-compensation mechanism for dosage-sensitive genes on the X chromosome. Proc. Natl. Acad. Sci. USA 2012, 109:5346-5351.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 5346-5351
    • Pessia, E.1    Makino, T.2    Bailly-Bechet, M.3    McLysaght, A.4    Marais, G.A.5
  • 44
    • 33751090746 scopus 로고    scopus 로고
    • Phosphorylation and functions of the RNA polymerase II CTD
    • Phatnani H.P., Greenleaf A.L. Phosphorylation and functions of the RNA polymerase II CTD. Genes Dev. 2006, 20:2922-2936.
    • (2006) Genes Dev. , vol.20 , pp. 2922-2936
    • Phatnani, H.P.1    Greenleaf, A.L.2
  • 45
    • 77955480155 scopus 로고    scopus 로고
    • The activation potential of MOF is constrained for dosage compensation
    • Prestel M., Feller C., Straub T., Mitlöhner H., Becker P.B. The activation potential of MOF is constrained for dosage compensation. Mol. Cell 2010, 38:815-826.
    • (2010) Mol. Cell , vol.38 , pp. 815-826
    • Prestel, M.1    Feller, C.2    Straub, T.3    Mitlöhner, H.4    Becker, P.B.5
  • 48
    • 65249141709 scopus 로고    scopus 로고
    • Database for mRNA half-life of 19 977 genes obtained by DNA microarray analysis of pluripotent and differentiating mouse embryonic stem cells
    • Sharova L.V., Sharov A.A., Nedorezov T., Piao Y., Shaik N., Ko M.S. Database for mRNA half-life of 19 977 genes obtained by DNA microarray analysis of pluripotent and differentiating mouse embryonic stem cells. DNA Res. 2009, 16:45-58.
    • (2009) DNA Res. , vol.16 , pp. 45-58
    • Sharova, L.V.1    Sharov, A.A.2    Nedorezov, T.3    Piao, Y.4    Shaik, N.5    Ko, M.S.6
  • 50
    • 49449109503 scopus 로고    scopus 로고
    • Mof (MYST1 or KAT8) is essential for progression of embryonic development past the blastocyst stage and required for normal chromatin architecture
    • Thomas T., Dixon M.P., Kueh A.J., Voss A.K. Mof (MYST1 or KAT8) is essential for progression of embryonic development past the blastocyst stage and required for normal chromatin architecture. Mol. Cell. Biol. 2008, 28:5093-5105.
    • (2008) Mol. Cell. Biol. , vol.28 , pp. 5093-5105
    • Thomas, T.1    Dixon, M.P.2    Kueh, A.J.3    Voss, A.K.4
  • 53
    • 78649458548 scopus 로고    scopus 로고
    • RNA sequencing shows no dosage compensation of the active X-chromosome
    • Xiong Y., Chen X., Chen Z., Wang X., Shi S., Wang X., Zhang J., He X. RNA sequencing shows no dosage compensation of the active X-chromosome. Nat. Genet. 2010, 42:1043-1047.
    • (2010) Nat. Genet. , vol.42 , pp. 1043-1047
    • Xiong, Y.1    Chen, X.2    Chen, Z.3    Wang, X.4    Shi, S.5    Wang, X.6    Zhang, J.7    He, X.8
  • 54
    • 77951794067 scopus 로고    scopus 로고
    • Global survey of escape from X inactivation by RNA-sequencing in mouse
    • Yang F., Babak T., Shendure J., Disteche C.M. Global survey of escape from X inactivation by RNA-sequencing in mouse. Genome Res. 2010, 20:614-622.
    • (2010) Genome Res. , vol.20 , pp. 614-622
    • Yang, F.1    Babak, T.2    Shendure, J.3    Disteche, C.M.4
  • 55
    • 84855448025 scopus 로고    scopus 로고
    • X-chromosome hyperactivation in mammals via nonlinear relationships between chromatin states and transcription
    • Yildirim E., Sadreyev R.I., Pinter S.F., Lee J.T. X-chromosome hyperactivation in mammals via nonlinear relationships between chromatin states and transcription. Nat. Struct. Mol. Biol. 2011, 19:56-61.
    • (2011) Nat. Struct. Mol. Biol. , vol.19 , pp. 56-61
    • Yildirim, E.1    Sadreyev, R.I.2    Pinter, S.F.3    Lee, J.T.4
  • 56
    • 67349173946 scopus 로고    scopus 로고
    • Evidence that the nonsense-mediated mRNA decay pathway participates in X chromosome dosage compensation in mammals
    • Yin S., Deng W., Zheng H., Zhang Z., Hu L., Kong X. Evidence that the nonsense-mediated mRNA decay pathway participates in X chromosome dosage compensation in mammals. Biochem. Biophys. Res. Commun. 2009, 383:378-382.
    • (2009) Biochem. Biophys. Res. Commun. , vol.383 , pp. 378-382
    • Yin, S.1    Deng, W.2    Zheng, H.3    Zhang, Z.4    Hu, L.5    Kong, X.6
  • 57
    • 3342929529 scopus 로고    scopus 로고
    • Transcript profiling during preimplantation mouse development
    • Zeng F., Baldwin D.A., Schultz R.M. Transcript profiling during preimplantation mouse development. Dev. Biol. 2004, 272:483-496.
    • (2004) Dev. Biol. , vol.272 , pp. 483-496
    • Zeng, F.1    Baldwin, D.A.2    Schultz, R.M.3
  • 59
    • 70149112313 scopus 로고    scopus 로고
    • Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation
    • Zippo A., Serafini R., Rocchigiani M., Pennacchini S., Krepelova A., Oliviero S. Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation. Cell 2009, 138:1122-1136.
    • (2009) Cell , vol.138 , pp. 1122-1136
    • Zippo, A.1    Serafini, R.2    Rocchigiani, M.3    Pennacchini, S.4    Krepelova, A.5    Oliviero, S.6


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