-
2
-
-
18844369530
-
Mechanisms and functions of RNA-guided RNA
-
(Grosjean, H., ed.), Springer-Verlag, Berlin Heidelberg
-
Yu, Y., Terns, R.M. and Terns, M.P. (2005) Mechanisms and functions of RNA-guided RNA. In Topics in Current Genetics, Volume 12 (Grosjean, H., ed.), pp. 223-262, Springer-Verlag, Berlin Heidelberg
-
(2005)
Topics in Current Genetics
, vol.12
, pp. 223-262
-
-
Yu, Y.1
Terns, R.M.2
Terns, M.P.3
-
4
-
-
33847187076
-
Non-coding RNAs: Lessons from the small nuclear and small nucleolar RNAs
-
Matera, G., Terns, R.M. and Terns, M.P. (2007) Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs. Nat. Rev. Mol. Cell Biol. 8, 209-220
-
(2007)
Nat. Rev. Mol. Cell Biol
, vol.8
, pp. 209-220
-
-
Matera, G.1
Terns, R.M.2
Terns, M.P.3
-
5
-
-
67649933366
-
Eukaryotic snoRNAs: A paradigm for gene expression flexibility
-
Dieci, G., Preti, M. and Montanini, B. (2009) Eukaryotic snoRNAs: a paradigm for gene expression flexibility. Genomics 94, 83-88
-
(2009)
Genomics
, vol.94
, pp. 83-88
-
-
Dieci, G.1
Preti, M.2
Montanini, B.3
-
6
-
-
77749329940
-
Box H/ACA small ribonucleoproteins
-
Kiss, T., Fayet-Lebaron, E. and Jády, B.E. (2010) Box H/ACA small ribonucleoproteins. Mol. Cell 37, 597-606
-
(2010)
Mol. Cell
, vol.37
, pp. 597-606
-
-
Kiss, T.1
Fayet-Lebaron, E.2
Jády, B.E.3
-
7
-
-
84928862309
-
Fragments of small nucleoloar RNAs as a new source for noncoding RNAs
-
(Mallick, B. and Ghosh, Z., eds), Springer-Verlag, Berlin, Heidelberg
-
Falaleeva, M. and Stamm, S. (2012) Fragments of small nucleoloar RNAs as a new source for noncoding RNAs. In Regulatory RNAs (Mallick, B. and Ghosh, Z., eds), pp. 49-71, Springer- Verlag, Berlin, Heidelberg
-
(2012)
Regulatory RNAs
, pp. 49-71
-
-
Falaleeva, M.1
Stamm, S.2
-
8
-
-
84865837598
-
The box C/D and H/ACA snoRNPs: Key players in the modification, processing and the dynamic folding of ribosomal RNA
-
Watkins, N.J. and Bohnsack, M.T. (2012) The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA. WIREs RNA 3, 397-414
-
(2012)
WIREs RNA
, vol.3
, pp. 397-414
-
-
Watkins, N.J.1
Bohnsack, M.T.2
-
9
-
-
0014387089
-
Small molecular weight monodisperse nuclear RNA
-
Weinberg, R.A. and Penman, S. (1968) Small molecular weight monodisperse nuclear RNA. J. Mol. Biol. 38, 289-304
-
(1968)
J. Mol. Biol
, vol.38
, pp. 289-304
-
-
Weinberg, R.A.1
Penman, S.2
-
10
-
-
0014408858
-
Studies on nucleolar 4 to 6 S ribonucleic acid of Novikoff hepatoma cells
-
Nakamura, T., Prestayko, A. and Busch, H. (1968) Studies on nucleolar 4 to 6 S ribonucleic acid of Novikoff hepatoma cells. J. Biol. Chem. 243, 1368-1375
-
(1968)
J. Biol. Chem
, vol.243
, pp. 1368-1375
-
-
Nakamura, T.1
Prestayko, A.2
Busch, H.3
-
11
-
-
0002199667
-
Small nuclear RNAs: RNA sequences, structure, and modifications
-
(Birnstiel, M.L., ed.), Springer-Verlag, New York
-
Reddy, R. and Busch, H. (1988) Small nuclear RNAs: RNA sequences, structure, and modifications. In Structure and Function of Major and Minor Small Nuclear Ribonucleoprotein Particles (Birnstiel, M.L., ed.), pp. 1-37, Springer-Verlag, New York
-
(1988)
Structure and Function of Major and Minor Small Nuclear Ribonucleoprotein Particles
, pp. 1-37
-
-
Reddy, R.1
Busch, H.2
-
12
-
-
0025276512
-
The U3 small nucleolar ribonucleoprotein functions in the first step of preribosomal RNA processing
-
Kass, S., Tyc, K., Steitz, J.A. and Sollner-Webb, B. (1990) The U3 small nucleolar ribonucleoprotein functions in the first step of preribosomal RNA processing. Cell 60, 897-908
-
(1990)
Cell
, vol.60
, pp. 897-908
-
-
Kass, S.1
Tyc, K.2
Steitz, J.A.3
Sollner-Webb, B.4
-
13
-
-
0023661309
-
A yeast small nuclear RNA is required for normal processing of preribosomal RNA
-
Tollervey, D. (1987) A yeast small nuclear RNA is required for normal processing of preribosomal RNA. EMBO J. 6, 4169-4175
-
(1987)
EMBO J.
, vol.6
, pp. 4169-4175
-
-
Tollervey, D.1
-
14
-
-
0029093602
-
Base pairing between U3 and the pre-ribosomal RNA is required for 18S rRNA synthesis
-
Beltrame, M. and Tollervey, D. (1995) Base pairing between U3 and the pre-ribosomal RNA is required for 18S rRNA synthesis. EMBO J. 14, 4350-4356
-
(1995)
EMBO J.
, vol.14
, pp. 4350-4356
-
-
Beltrame, M.1
Tollervey, D.2
-
15
-
-
0030572699
-
The RNA world of the nucleolus: Two major families of small RNAs defined by different box elements with related functions
-
Balakin, A.G., Smith, L. and Fournier, M.J. (1996) The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. Cell 86, 823-834
-
(1996)
Cell
, vol.86
, pp. 823-834
-
-
Balakin, A.G.1
Smith, L.2
Fournier, M.J.3
-
16
-
-
0030963268
-
Function and synthesis of small nucleolar RNAs
-
Tollervey, D. and Kiss, T. (1997) Function and synthesis of small nucleolar RNAs. Curr. Opin. Cell Biol. 9, 337-342
-
(1997)
Curr. Opin. Cell Biol
, vol.9
, pp. 337-342
-
-
Tollervey, D.1
Kiss, T.2
-
17
-
-
0030604698
-
Sitespecific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs
-
Kiss-László, Z., Henry, Y., Bachellerie, J.P., Caizergues-Ferrer, M., and Kiss, T. (1996) Sitespecific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. Cell 85, 1077-1088
-
(1996)
Cell
, vol.85
, pp. 1077-1088
-
-
Kiss-László, Z.1
Henry, Y.2
Bachellerie, J.P.3
Caizergues-Ferrer, M.4
Kiss, T.5
-
18
-
-
0030581160
-
Intron-encoded, antisense small nucleolar RNAs: The characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs
-
Nicoloso, M., Qu, L.H., Michot, B., and Bachellerie, J.P. (1996) Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. J. Mol. Biol. 260, 178-195
-
(1996)
J. Mol. Biol
, vol.260
, pp. 178-195
-
-
Nicoloso, M.1
Qu, L.H.2
Michot, B.3
Bachellerie, J.P.4
-
19
-
-
0030711050
-
Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
-
Ganot, P., Bortolin, M.L. and Kiss, T. (1997) Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 89, 799-809
-
(1997)
Cell
, vol.89
, pp. 799-809
-
-
Ganot, P.1
Bortolin, M.L.2
Kiss, T.3
-
20
-
-
0030771087
-
Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA
-
Ni, J., Tien, A.L., and Fournier, M.J. (1997) Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA. Cell 89, 565-573
-
(1997)
Cell
, vol.89
, pp. 565-573
-
-
Ni, J.1
Tien, A.L.2
Fournier, M.J.3
-
21
-
-
0033582628
-
A computational screen for methylation guide snoRNAs in yeast
-
Lowe, T.M. and Eddy, S.R. (1999) A computational screen for methylation guide snoRNAs in yeast. Science 283, 1168-1171
-
(1999)
Science
, vol.283
, pp. 1168-1171
-
-
Lowe, T.M.1
Eddy, S.R.2
-
22
-
-
0034615782
-
Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: Lessons from the Pyrococcus genomes
-
Gaspin, C., Cavaillé, J., Erauso, G., and Bachellerie, J.P. (2000) Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. J. Mol. Biol. 297, 895-906
-
(2000)
J. Mol. Biol
, vol.297
, pp. 895-906
-
-
Gaspin, C.1
Cavaillé, J.2
Erauso, G.3
Bachellerie, J.P.4
-
23
-
-
0034697257
-
Homologs of small nucleolar RNAs in Archaea
-
Omer, A.D., Lowe, T.M., Russell, G., Ebhardt, H., Eddy, S.R. and Dennis, P.P. (2000) Homologs of small nucleolar RNAs in Archaea. Science 288, 517-522
-
(2000)
Science
, vol.288
, pp. 517-522
-
-
Omer, A.D.1
Lowe, T.M.2
Russell, G.3
Ebhardt, H.4
Eddy, S.R.5
Dennis, P.P.6
-
24
-
-
0037117533
-
In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex
-
Omer, A.D., Ziesche, S., Ebhardt, H., and Dennis, P.P. (2002) In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex. Proc. Natl. Acad. Sci. U.S.A. 99, 5289-5294
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 5289-5294
-
-
Omer, A.D.1
Ziesche, S.2
Ebhardt, H.3
Dennis, P.P.4
-
25
-
-
0035890644
-
Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp
-
Clouet d'Orval, B., Bortolin, M.L., Gaspin, C. and Bachellerie, J.P. (2001) Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp. Nucleic Acids Res. 29, 4518-4529
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4518-4529
-
-
Clouet D'Orval, B.1
Bortolin, M.L.2
Gaspin, C.3
Bachellerie, J.P.4
-
26
-
-
0036629250
-
RRNA modifications and ribosome function
-
Decatur, W.A. and Fournier, M.J. (2002) rRNA modifications and ribosome function. Trends Biochem. Sci. 27, 344-351
-
(2002)
Trends Biochem. Sci
, vol.27
, pp. 344-351
-
-
Decatur, W.A.1
Fournier, M.J.2
-
27
-
-
0033551919
-
Archean molecular fossils and the early rise of eukaryotes
-
Brocks, J.J. (1999) Archean molecular fossils and the early rise of eukaryotes. Science 285, 1033-1036
-
(1999)
Science
, vol.285
, pp. 1033-1036
-
-
Brocks, J.J.1
-
28
-
-
84555208834
-
The human genome retains relics of its prokaryotic ancestry: Human genes of archaebacterial and eubacterial origin exhibit remarkable differences
-
Alvarez-Ponce, D. and McInerney, J.O. (2011) The human genome retains relics of its prokaryotic ancestry: human genes of archaebacterial and eubacterial origin exhibit remarkable differences. Genome Biol. Evol. 3, 782-790
-
(2011)
Genome Biol. Evol
, vol.3
, pp. 782-790
-
-
Alvarez-Ponce, D.1
McInerney, J.O.2
-
29
-
-
3242771427
-
Evolutionary origins of the RNA-guided nucleotide-modification complexes: From the primitive translation apparatus?
-
Tran, E., Brown, J. and Maxwell, E.S. (2004) Evolutionary origins of the RNA-guided nucleotide-modification complexes: from the primitive translation apparatus? Trends Biochem. Sci. 29, 343-350
-
(2004)
Trends Biochem. Sci
, vol.29
, pp. 343-350
-
-
Tran, E.1
Brown, J.2
Maxwell, E.S.3
-
30
-
-
0036436658
-
Differential expression of human 5S snoRNA genes
-
Chang, L. Sen, Lin, S.Y., Lieu, A.S. and Wu, T.L. (2002) Differential expression of human 5S snoRNA genes. Biochem. Biophys. Res. Commun. 299, 196-200
-
(2002)
Biochem. Biophys. Res. Commun
, vol.299
, pp. 196-200
-
-
Sen, C.L.1
Lin, S.Y.2
Lieu, A.S.3
Wu, T.L.4
-
31
-
-
84860217230
-
Small nucleolar RNAs in cancer
-
Mannoor, K., Liao, J. and Jiang, F. (2012) Small nucleolar RNAs in cancer. Biochim. Biophys. Acta 1826, 121-128
-
(2012)
Biochim. Biophys. Acta
, vol.1826
, pp. 121-128
-
-
Mannoor, K.1
Liao, J.2
Jiang, F.3
-
32
-
-
84856236025
-
Are snoRNAs and snoRNA host genes new players in cancer?
-
Williams, G.T. and Farzaneh, F. (2012) Are snoRNAs and snoRNA host genes new players in cancer? Nat. Rev. Cancer 12, 84-88
-
(2012)
Nat. Rev. Cancer
, vol.12
, pp. 84-88
-
-
Williams, G.T.1
Farzaneh, F.2
-
33
-
-
84855281316
-
Loss of ribosomal RNA modification causes developmental defects in zebrafish
-
Higa-Nakamine, S., Suzuki, T., Uechi, T., Chakraborty, A., Nakajima, Y., Nakamura, M., Hirano, N., Suzuki, T. and Kenmochi, N. (2012) Loss of ribosomal RNA modification causes developmental defects in zebrafish. Nucleic Acids Res. 40, 391-398
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 391-398
-
-
Higa-Nakamine, S.1
Suzuki, T.2
Uechi, T.3
Chakraborty, A.4
Nakajima, Y.5
Nakamura, M.6
Hirano, N.7
Suzuki, T.8
Kenmochi, N.9
-
34
-
-
0031799895
-
X-linked dyskeratosis congenita is caused by mutations in a highly conserved gene with putative nucleolar functions
-
Heiss, N., Knight, S. and Vulliamy, T. (1998) X-linked dyskeratosis congenita is caused by mutations in a highly conserved gene with putative nucleolar functions. Nat Genet. 19, 32-38
-
(1998)
Nat Genet
, vol.19
, pp. 32-38
-
-
Heiss, N.1
Knight, S.2
Vulliamy, T.3
-
35
-
-
32644447756
-
Post-transcriptional nucleotide modification and alternative folding of RNA
-
Helm, M. (2006) Post-transcriptional nucleotide modification and alternative folding of RNA. Nucleic Acids Res. 34, 721-733
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 721-733
-
-
Helm, M.1
-
36
-
-
80955171919
-
Multicomponent machines in RNA modification: H/ACA ribonucleoproteins
-
(Grosjean, H., ed.), Landes Bioscience, Austin, TX
-
Grozdanov, P.N. and Meier, U.T. (2009) Multicomponent machines in RNA modification: H/ACA ribonucleoproteins. In DNA and RNA Modification Enzymes: Structure, Mechanism, Function, and Evolution, (Grosjean, H., ed.), pp. 450-460, Landes Bioscience, Austin, TX
-
(2009)
DNA and RNA Modification Enzymes: Structure, Mechanism, Function, and Evolution
, pp. 450-460
-
-
Grozdanov, P.N.1
Meier, U.T.2
-
37
-
-
33644875300
-
SnoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs
-
Lestrade, L. and Weber, M.J. (2006) snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. Nucleic Acids Res. 34, D158-D162
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Lestrade, L.1
Weber, M.J.2
-
38
-
-
0032214692
-
Modification of U6 spliceosomal RNA is guided by other small RNAs
-
Tycowski, K.T., You, Z.H., Graham, P.J. and Steitz, J.A. (1998) Modification of U6 spliceosomal RNA is guided by other small RNAs. Mol. Cell 2, 629-638
-
(1998)
Mol. Cell
, vol.2
, pp. 629-638
-
-
Tycowski, K.T.1
You, Z.H.2
Graham, P.J.3
Steitz, J.A.4
-
39
-
-
9144256178
-
Sequential 2'-O-methylation of archaeal pre-tRNATrp nucleotides is guided by the intron-encoded but trans-acting box C/D ribonucleoprotein of pre-tRNA
-
Singh, S.K., Gurha, P., Tran, E.J., Maxwell, E.S. and Gupta, R. (2004) Sequential 2'-O-methylation of archaeal pre-tRNATrp nucleotides is guided by the intron-encoded but trans-acting box C/D ribonucleoprotein of pre-tRNA. J. Biol. Chem. 279, 47661-47671
-
(2004)
J. Biol. Chem
, vol.279
, pp. 47661-47671
-
-
Singh, S.K.1
Gurha, P.2
Tran, E.J.3
Maxwell, E.S.4
Gupta, R.5
-
40
-
-
0034999985
-
A guided tour: Small RNA function in Archaea
-
Dennis, P.P., Omer, A., and Lowe, T. (2001) A guided tour: small RNA function in Archaea. Mol. Microbiol. 40, 509-519
-
(2001)
Mol. Microbiol
, vol.40
, pp. 509-519
-
-
Dennis, P.P.1
Omer, A.2
Lowe, T.3
-
41
-
-
46749136340
-
Mass spectrometry of the fifth nucleoside: A review of the identification of pseudouridine in nucleic acids
-
Durairaj, A. and Limbach, P.A. (2008) Mass spectrometry of the fifth nucleoside: a review of the identification of pseudouridine in nucleic acids. Anal. Chim. Acta 623, 117-125
-
(2008)
Anal. Chim. Acta
, vol.623
, pp. 117-125
-
-
Durairaj, A.1
Limbach, P.A.2
-
42
-
-
29144449192
-
The K-loop, a general feature of the Pyrococcus C/D guide RNAs, is an RNA structural motif related to the K-turn
-
Nolivos, S., Carpousis, A.J. and Clouet-d'Orval, B. (2005) The K-loop, a general feature of the Pyrococcus C/D guide RNAs, is an RNA structural motif related to the K-turn. Nucleic Acids Res. 33, 6507-6514
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6507-6514
-
-
Nolivos, S.1
Carpousis, A.J.2
Clouet-D'Orval, B.3
-
43
-
-
79958849878
-
Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing
-
van Nues, R.W., Granneman, S., Kudla, G., Sloan, K.E., Chicken, M., Tollervey, D. and Watkins, N.J. (2011) Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing. EMBO J. 30, 2420-2430
-
(2011)
EMBO J.
, vol.30
, pp. 2420-2430
-
-
Van Nues, R.W.1
Granneman, S.2
Kudla, G.3
Sloan, K.E.4
Chicken, M.5
Tollervey, D.6
Watkins, N.J.7
-
44
-
-
79953726593
-
Multicomponent 2'-O-ribose methylation machines: Evolving box C/D RNP structure and function
-
(Grosjean, H., ed.), Landes Bioscience, Austin, TX
-
Gagnon, K.T., Qu, G., and Maxwell, E.S. (2009) Multicomponent 2'-O-ribose methylation machines: evolving box C/D RNP structure and function. In DNA and RNA Modification Enzymes: Structure, Mechanism, Function, and Evolution, (Grosjean, H., ed.), pp. 436-449, Landes Bioscience, Austin, TX
-
(2009)
DNA and RNA Modification Enzymes: Structure, Mechanism, Function, and Evolution
, pp. 436-449
-
-
Gagnon, K.T.1
Qu, G.2
Maxwell, E.S.3
-
45
-
-
40649110933
-
Elucidating the role of C/D snoRNA in rRNA processing and modification in Trypanosoma brucei
-
Barth, S., Shalem, B., Hury, A., Tkacz, I.D., Liang, X.H., Uliel, S., Myslyuk, I., Doniger, T., Salmon-Divon, M., Unger, R. and Michaeli, S. (2008) Elucidating the role of C/D snoRNA in rRNA processing and modification in Trypanosoma brucei. Eukaryotic Cell 7, 86-101
-
(2008)
Eukaryotic Cell
, vol.7
, pp. 86-101
-
-
Barth, S.1
Shalem, B.2
Hury, A.3
Tkacz, I.D.4
Liang, X.H.5
Uliel, S.6
Myslyuk, I.7
Doniger, T.8
Salmon-Divon, M.9
Unger, R.10
Michaeli, S.11
-
46
-
-
84857388974
-
Discovery of Pyrobaculum small RNA families with atypical pseudouridine guide RNA features
-
Bernick, D.L., Dennis, P.P., Höchsmann, M. and Lowe, T.M. (2012) Discovery of Pyrobaculum small RNA families with atypical pseudouridine guide RNA features. RNA 18, 402-411
-
(2012)
RNA
, vol.18
, pp. 402-411
-
-
Bernick, D.L.1
Dennis, P.P.2
Höchsmann, M.3
Lowe, T.M.4
-
47
-
-
1542298827
-
Small nucleolar RNAs that guide modification in trypanosomatids: Repertoire, targets, genome organisation, and unique functions
-
Uliel, S., Liang, X., Unger, R. and Michaeli, S. (2004) Small nucleolar RNAs that guide modification in trypanosomatids: repertoire, targets, genome organisation, and unique functions. Int. J. Parasitol. 34, 445-454
-
(2004)
Int. J. Parasitol
, vol.34
, pp. 445-454
-
-
Uliel, S.1
Liang, X.2
Unger, R.3
Michaeli, S.4
-
48
-
-
0033555266
-
Elements essential for accumulation and function of small nucleolar RNAs directing site-specific pseudouridylation of ribosomal RNAs
-
Bortolin, M.L., Ganot, P. and Kiss, T. (1999) Elements essential for accumulation and function of small nucleolar RNAs directing site-specific pseudouridylation of ribosomal RNAs. EMBO J. 18, 457-469
-
(1999)
EMBO J.
, vol.18
, pp. 457-469
-
-
Bortolin, M.L.1
Ganot, P.2
Kiss, T.3
-
49
-
-
3042523704
-
Pseudouridine-guide RNAs and other Cbf5p-associated RNAs in Euglena gracilis
-
Russell, A.G., Schnare, M.N. and Gray, M.W. (2004) Pseudouridine-guide RNAs and other Cbf5p-associated RNAs in Euglena gracilis. RNA 10, 1034-1046
-
(2004)
RNA
, vol.10
, pp. 1034-1046
-
-
Russell, A.G.1
Schnare, M.N.2
Gray, M.W.3
-
50
-
-
43349108346
-
Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs
-
Muller, S., Leclerc, F., Behm-Ansmant, I., Fourmann, J.B., Charpentier, B. and Branlant, C. (2008) Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs. Nucleic Acids Res. 36, 2459-2475
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 2459-2475
-
-
Muller, S.1
Leclerc, F.2
Behm-Ansmant, I.3
Fourmann, J.B.4
Charpentier, B.5
Branlant, C.6
-
51
-
-
0037188531
-
Identification of 86 candidates for small nonmessenger RNAs from the archaeon Archaeoglobus fulgidus
-
Tang, T.-H., Bachellerie, J.-P., Rozhdestvensky, T., Bortolin, M.L., Huber, H., Drungowski, M., Elge, T., Brosius, J. and Hüttenhofer, A. (2002) Identification of 86 candidates for small nonmessenger RNAs from the archaeon Archaeoglobus fulgidus. Proc. Natl. Acad. Sci. U.S.A. 99, 7536-7541
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 7536-7541
-
-
Tang, T.-H.1
Bachellerie, J.-P.2
Rozhdestvensky, T.3
Bortolin, M.L.4
Huber, H.5
Drungowski, M.6
Elge, T.7
Brosius, J.8
Hüttenhofer, A.9
-
52
-
-
80051669772
-
Structure of H/ACA RNP protein Nhp2p reveals cis/trans isomerization of a conserved proline at the RNA and Nop10 binding interface
-
Koo, B.-K., Park, C.-J., Fernandez, C.F., Chim, N., Ding, Y., Chanfreau, G. and Feigon, J. (2011) Structure of H/ACA RNP protein Nhp2p reveals cis/trans isomerization of a conserved proline at the RNA and Nop10 binding interface. J. Mol. Biol. 411, 927-942
-
(2011)
J. Mol. Biol
, vol.411
, pp. 927-942
-
-
Koo, B.-K.1
Park, C.-J.2
Fernandez, C.F.3
Chim, N.4
Ding, Y.5
Chanfreau, G.6
Feigon, J.7
-
53
-
-
34548707914
-
Identifi- cation of determinants in the protein partners aCBF5 and aNOP10 necessary for the tRNA:Psi55-synthase and RNA-guided RNA:Psi-synthase activities
-
Muller, S., Fourmann, J.-B., Loegler, C., Charpentier, B. and Branlant, C. (2007) Identifi- cation of determinants in the protein partners aCBF5 and aNOP10 necessary for the tRNA:Psi55-synthase and RNA-guided RNA:Psi-synthase activities. Nucleic Acids Res. 35, 5610-5624
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5610-5624
-
-
Muller, S.1
Fourmann, J.-B.2
Loegler, C.3
Charpentier, B.4
Branlant, C.5
-
54
-
-
33749137520
-
Formation of the conserved pseudouridine at position 55 in archaeal tRNA
-
Roovers, M., Hale, C., Tricot, C., Terns, M.P., Terns, R.M., Grosjean, H. and Droogmans, L. (2006) Formation of the conserved pseudouridine at position 55 in archaeal tRNA. Nucleic Acids Res. 34, 4293-4301
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4293-4301
-
-
Roovers, M.1
Hale, C.2
Tricot, C.3
Terns, M.P.4
Terns, R.M.5
Grosjean, H.6
Droogmans, L.7
-
55
-
-
0037013831
-
Cajal body-specific small nuclear RNAs: A novel class of 2'-O-methylation and pseudouridylation guide RNAs
-
Darzacq, X., Jády, B.E., Verheggen, C., Kiss, A.M., Bertrand, E. and Kiss, T. (2002) Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. EMBO J. 21, 2746-2756
-
(2002)
EMBO J.
, vol.21
, pp. 2746-2756
-
-
Darzacq, X.1
Jády, B.E.2
Verheggen, C.3
Kiss, A.M.4
Bertrand, E.5
Kiss, T.6
-
56
-
-
49249139050
-
The post-transcriptional steps of eukaryotic ribosome biogenesis
-
Henras, A.K., Soudet, J., Gérus, M., Lebaron, S., Caizergues-Ferrer, M., Mougin, A. and Henry, Y. (2008) The post-transcriptional steps of eukaryotic ribosome biogenesis. Cell. Mol. Life Sci. 65, 2334-2359
-
(2008)
Cell. Mol. Life Sci
, vol.65
, pp. 2334-2359
-
-
Henras, A.K.1
Soudet, J.2
Gérus, M.3
Lebaron, S.4
Caizergues-Ferrer, M.5
Mougin, A.6
Henry, Y.7
-
57
-
-
0343938893
-
Characterisation of the U83 and U84 small nucleolar RNAs: Two novel 2'-O-ribose methylation guide RNAs that lack complementarities to ribosomal RNAs
-
Jády, B.E. and Kiss, T. (2000) Characterisation of the U83 and U84 small nucleolar RNAs: two novel 2'-O-ribose methylation guide RNAs that lack complementarities to ribosomal RNAs. Nucleic Acids Res. 28, 1348-1354
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 1348-1354
-
-
Jády, B.E.1
Kiss, T.2
-
58
-
-
0036703184
-
The expanding snoRNA world
-
Bachellerie, J.P., Cavaillé, J. and Hüttenhofer, A. (2002) The expanding snoRNA world. Biochimie 84, 775-790
-
(2002)
Biochimie
, vol.84
, pp. 775-790
-
-
Bachellerie, J.P.1
Cavaillé, J.2
Hüttenhofer, A.3
-
59
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee, R.C., Feinbaum, R.L. and Ambros, V. (1993) The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75, 843-854
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
60
-
-
61849137222
-
Many roads to maturity: MicroRNA biogenesis pathways and their regulation
-
Winter, J., Jung, S., Keller, S., Gregory, R.I. and Diederichs, S. (2009) Many roads to maturity: microRNA biogenesis pathways and their regulation. Nat. Cell Biol. 11, 228-234
-
(2009)
Nat. Cell Biol
, vol.11
, pp. 228-234
-
-
Winter, J.1
Jung, S.2
Keller, S.3
Gregory, R.I.4
Diederichs, S.5
-
61
-
-
67649386471
-
Small RNAs derived from snoRNAs
-
Taft, R.J., Glazov, E.A., Lassmann, T., Hayashizaki, Y., Carninci, P. and Mattick, J.S. (2009) Small RNAs derived from snoRNAs. RNA 15, 1233-1240
-
(2009)
RNA
, vol.15
, pp. 1233-1240
-
-
Taft, R.J.1
Glazov, E.A.2
Lassmann, T.3
Hayashizaki, Y.4
Carninci, P.5
Mattick, J.S.6
-
62
-
-
55949112523
-
A human snoRNA with microRNA-like functions
-
Ender, C., Krek, A., Friedländer, M.R., Beitzinger, M., Weinmann, L., Chen, W., Pfeffer, S., Rajewsky, N. and Meister, G. (2008) A human snoRNA with microRNA-like functions. Mol. Cell 32, 519-528
-
(2008)
Mol. Cell
, vol.32
, pp. 519-528
-
-
Ender, C.1
Krek, A.2
Friedländer, M.R.3
Beitzinger, M.4
Weinmann, L.5
Chen, W.6
Pfeffer, S.7
Rajewsky, N.8
Meister, G.9
-
63
-
-
71549169628
-
Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs
-
Cole, C., Sobala, A., Lu, C. and Thatcher, S. (2009) Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA 15, 2147-2160
-
(2009)
RNA
, vol.15
, pp. 2147-2160
-
-
Cole, C.1
Sobala, A.2
Lu, C.3
Thatcher, S.4
-
64
-
-
70349661909
-
Human miRNA precursors with box H/ACA snoRNA features
-
Scott, M.S., Avolio, F., Ono, M., Lamond, A.I. and Barton, G.J. (2009) Human miRNA precursors with box H/ACA snoRNA features. PLoS Comput. Biol. 5, e1000507
-
(2009)
PLoS Comput. Biol
, vol.5
-
-
Scott, M.S.1
Avolio, F.2
Ono, M.3
Lamond, A.I.4
Barton, G.J.5
-
65
-
-
79551499254
-
Human box C/D snoRNAs with miRNA like functions: Expanding the range of regulatory RNAs
-
Brameier, M., Herwig, A., Reinhardt, R., Walter, L. and Gruber, J. (2011) Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs. Nucleic Acids Res. 39, 675-686
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 675-686
-
-
Brameier, M.1
Herwig, A.2
Reinhardt, R.3
Walter, L.4
Gruber, J.5
-
66
-
-
57149094023
-
SnoRNA, a novel precursor of microRNA in Giardia lamblia
-
Saraiya, A.A. and Wang, C.C. (2008) snoRNA, a novel precursor of microRNA in Giardia lamblia. PLoS Pathog. 4, e1000224
-
(2008)
PLoS Pathog
, vol.4
-
-
Saraiya, A.A.1
Wang, C.C.2
-
67
-
-
70049106406
-
Expression and processing of a small nucleolar RNA from the Epstein-Barr virus genome
-
Hutzinger, R., Feederle, R., Mrazek, J., Schiefermeier, N., Balwierz, P.J., Zavolan, M., Polacek, N., Delecluse, H.J. and Hüttenhofer, A. (2009) Expression and processing of a small nucleolar RNA from the Epstein-Barr virus genome. PLoS Pathog. 5, e1000547
-
(2009)
PLoS Pathog
, vol.5
-
-
Hutzinger, R.1
Feederle, R.2
Mrazek, J.3
Schiefermeier, N.4
Balwierz, P.J.5
Zavolan, M.6
Polacek, N.7
Delecluse, H.J.8
Hüttenhofer, A.9
-
68
-
-
84865205659
-
Diversity of antisense and other non-coding RNAs in archaea revealed by comparative small RNA sequencing in four Pyrobaculum species
-
Bernick, D.L., Dennis, P.P., Lui, L.M. and Lowe, T.M. (2012) Diversity of antisense and other non-coding RNAs in archaea revealed by comparative small RNA sequencing in four Pyrobaculum species. Front. Microbiol. 3, 231
-
(2012)
Front. Microbiol
, vol.3
, pp. 231
-
-
Bernick, D.L.1
Dennis, P.P.2
Lui, L.M.3
Lowe, T.M.4
-
69
-
-
69049118109
-
MicroRNAs with a nucleolar location
-
Politz, J.C.R., Hogan, E.M. and Pederson, T. (2009) MicroRNAs with a nucleolar location. RNA 15, 1705-1715
-
(2009)
RNA
, vol.15
, pp. 1705-1715
-
-
Politz, J.C.R.1
Hogan, E.M.2
Pederson, T.3
-
70
-
-
84894406580
-
Telomerase end replication: Lagging strand and no DNA longer problem?
-
Lingner, J., Cooper, J.P. and Cech, T.R. (2012) Telomerase end replication: lagging strand and no DNA longer problem? Science 269, 1533-1534
-
(2012)
Science
, vol.269
, pp. 1533-1534
-
-
Lingner, J.1
Cooper, J.P.2
Cech, T.R.3
-
71
-
-
61749085638
-
Trypanosoma brucei spliced leader RNA maturation by the cap 1 2'-O-ribose methyltransferase and SLA1 H/ACA snoRNA pseudouridine synthase complex
-
Zamudio, J.R., Mittra, B., Chattopadhyay, A., Wohlschlegel, J.A., Sturm, N.R. and Campbell, D.A. (2009) Trypanosoma brucei spliced leader RNA maturation by the cap 1 2'-O-ribose methyltransferase and SLA1 H/ACA snoRNA pseudouridine synthase complex. Mol. Cell. Biol. 29, 1202-1211
-
(2009)
Mol. Cell. Biol
, vol.29
, pp. 1202-1211
-
-
Zamudio, J.R.1
Mittra, B.2
Chattopadhyay, A.3
Wohlschlegel, J.A.4
Sturm, N.R.5
Campbell, D.A.6
-
72
-
-
77951744202
-
Analysis of human small nucleolar RNAs (snoRNA) and the development of snoRNA modulator of gene expression vectors
-
Ono, M., Yamada, K., Avolio, F., Scott, M.S., van Koningsbruggen, S., Barton, G.J. and Lamond, A.I. (2010) Analysis of human small nucleolar RNAs (snoRNA) and the development of snoRNA modulator of gene expression vectors. Mol. Biol. Cell 21, 1569-1584
-
(2010)
Mol. Biol. Cell
, vol.21
, pp. 1569-1584
-
-
Ono, M.1
Yamada, K.2
Avolio, F.3
Scott, M.S.4
Van Koningsbruggen, S.5
Barton, G.J.6
Lamond, A.I.7
-
73
-
-
77950422751
-
Synthetic translational regulation by an L7Ae-kink-turn RNP switch
-
Saito, H., Kobayashi, T., Hara, T., Fujita, Y., Hayashi, K., Furushima, R. and Inoue, T. (2010) Synthetic translational regulation by an L7Ae-kink-turn RNP switch. Nat. Chem. Biol. 6, 71-78
-
(2010)
Nat. Chem. Biol
, vol.6
, pp. 71-78
-
-
Saito, H.1
Kobayashi, T.2
Hara, T.3
Fujita, Y.4
Hayashi, K.5
Furushima, R.6
Inoue, T.7
-
74
-
-
37749034810
-
Targeted pre-mRNA modification for gene silencing and regulation
-
Zhao, X. and Yu, Y. (2007) Targeted pre-mRNA modification for gene silencing and regulation. Nat. Methods 5, 95-100
-
(2007)
Nat. Methods
, vol.5
, pp. 95-100
-
-
Zhao, X.1
Yu, Y.2
-
75
-
-
84877259671
-
Analogues of artificial human box C/D small nucleolar RNA as regulators of alternative splicing of a pre-mRNA target
-
Stepanov, G.A., Semenov, D.V, Kuligina, E.V., Koval, O.A., Rabinov, I.V., Kit, Y.Y. and Richter, V.A. (2012) Analogues of artificial human box C/D small nucleolar RNA as regulators of alternative splicing of a pre-mRNA target. Acta Nat. 4, 32-41
-
(2012)
Acta Nat
, vol.4
, pp. 32-41
-
-
Stepanov, G.A.1
Semenov, D.V.2
Kuligina, E.V.3
Koval, O.A.4
Rabinov, I.V.5
Kit, Y.Y.6
Richter, V.A.7
-
76
-
-
0032894591
-
A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae
-
Samarsky, D.A. and Fournier, M.J. (1999) A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. Nucleic Acids Res. 27, 161-164
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 161-164
-
-
Samarsky, D.A.1
Fournier, M.J.2
-
77
-
-
0034852680
-
Probing RNA in vivo with methylation guide small nucleolar RNAs
-
Liu, B., Ni, J. and Fournier, M.J. (2001) Probing RNA in vivo with methylation guide small nucleolar RNAs. Methods 23, 276-286
-
(2001)
Methods
, vol.23
, pp. 276-286
-
-
Liu, B.1
Ni, J.2
Fournier, M.J.3
-
78
-
-
79959284255
-
Converting nonsense codons into sense codons by targeted pseudouridylation
-
Karijolich, J. and Yu, Y.-T. (2011) Converting nonsense codons into sense codons by targeted pseudouridylation. Nature 474, 395-398
-
(2011)
Nature
, vol.474
, pp. 395-398
-
-
Karijolich, J.1
Yu, Y.-T.2
-
79
-
-
84861786430
-
Inducing nonsense suppression by targeted pseudouridylation
-
Huang, C., Wu, G. and Yu, Y.-T. (2012) Inducing nonsense suppression by targeted pseudouridylation. Nat. Protoc. 7, 789-800
-
(2012)
Nat. Protoc
, vol.7
, pp. 789-800
-
-
Huang, C.1
Wu, G.2
Yu, Y.-T.3
-
80
-
-
77952473473
-
The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing
-
Kishore, S., Khanna, A., Zhang, Z., Hui, J., Balwierz, P.J., Stefan, M., Beach, C., Nicholls, R.D., Zavolan, M. and Stamm, S. (2010) The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing. Hum. Mol. Genet. 19, 1153-1164
-
(2010)
Hum. Mol. Genet
, vol.19
, pp. 1153-1164
-
-
Kishore, S.1
Khanna, A.2
Zhang, Z.3
Hui, J.4
Balwierz, P.J.5
Stefan, M.6
Beach, C.7
Nicholls, R.D.8
Zavolan, M.9
Stamm, S.10
-
81
-
-
0034687740
-
Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization
-
Cavaillé, J., Buiting, K., Kiefmann, M., Lalande, M., Brannan, C.I., Horsthemke, B., Bachellerie, J.P., Brosius, J. and Hüttenhofer, A. (2000) Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. Proc. Natl. Acad. Sci. U.S.A. 97, 14311-14316
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 14311-14316
-
-
Cavaillé, J.1
Buiting, K.2
Kiefmann, M.3
Lalande, M.4
Brannan, C.I.5
Horsthemke, B.6
Bachellerie, J.P.7
Brosius, J.8
Hüttenhofer, A.9
-
82
-
-
0035509699
-
The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A
-
Runte, M., Hüttenhofer, A., Gross, S., Kiefmann, M., Horsthemke, B. and Buiting, K. (2001) The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. Hum. Mol. Genet. 10, 2687-2700
-
(2001)
Hum. Mol. Genet
, vol.10
, pp. 2687-2700
-
-
Runte, M.1
Hüttenhofer, A.2
Gross, S.3
Kiefmann, M.4
Horsthemke, B.5
Buiting, K.6
-
83
-
-
0033372362
-
Prader-Willi Syndrome, diabetes mellitus and hypogonadism
-
Nagai, T. and Mori, M. (1999) Prader-Willi Syndrome, diabetes mellitus and hypogonadism. Biomed. Pharmacother. 53, 452-454
-
(1999)
Biomed. Pharmacother
, vol.53
, pp. 452-454
-
-
Nagai, T.1
Mori, M.2
-
84
-
-
44349191455
-
Prader-Willi phenotype caused by paternal deficiency for the HBII-85 C/D box small nucleolar RNA cluster
-
Sahoo, T., Del Gaudio, D., German, J.R., Shinawi, M., Peters, S.U., Person, R.E., Garnica, A., Cheung, S.W. and Beaudet, A.L. (2008) Prader-Willi phenotype caused by paternal deficiency for the HBII-85 C/D box small nucleolar RNA cluster. Nat. Genet. 40, 719-721
-
(2008)
Nat. Genet
, vol.40
, pp. 719-721
-
-
Sahoo, T.1
Del Gaudio, D.2
German, J.R.3
Shinawi, M.4
Peters, S.U.5
Person, R.E.6
Garnica, A.7
Cheung, S.W.8
Beaudet, A.L.9
-
86
-
-
37549056263
-
SnoTARGET shows that human orphan snoRNA targets locate close to alternative splice junctions
-
Bazeley, P.S., Shepelev, V., Talebizadeh, Z., Butler, M.G., Fedorova, L., Filatov, V. and Fedorov, A. (2008) snoTARGET shows that human orphan snoRNA targets locate close to alternative splice junctions. Gene 408, 172-179
-
(2008)
Gene
, vol.408
, pp. 172-179
-
-
Bazeley, P.S.1
Shepelev, V.2
Talebizadeh, Z.3
Butler, M.G.4
Fedorova, L.5
Filatov, V.6
Fedorov, A.7
-
87
-
-
77953270602
-
Nucleolar RNPs: From genes to functional snoRNAs in plants
-
Rodor, J., Letelier, I., Holuigue, L. and Echeverria, M. (2010) Nucleolar RNPs: from genes to functional snoRNAs in plants. Biochem. Soc. Trans. 38, 672-676
-
(2010)
Biochem. Soc. Trans
, vol.38
, pp. 672-676
-
-
Rodor, J.1
Letelier, I.2
Holuigue, L.3
Echeverria, M.4
-
88
-
-
26644449673
-
Dynamic developmental regulation of the large non-coding RNA associated with the mouse 7C imprinted chromosomal region
-
Le Meur, E., Watrin, F., Landers, M., Sturny, R., Lalande, M. and Muscatelli, F. (2005) Dynamic developmental regulation of the large non-coding RNA associated with the mouse 7C imprinted chromosomal region. Dev. Biol. 286, 587-600
-
(2005)
Dev. Biol
, vol.286
, pp. 587-600
-
-
Le Meur, E.1
Watrin, F.2
Landers, M.3
Sturny, R.4
Lalande, M.5
Muscatelli, F.6
-
89
-
-
0037264089
-
Plant snoRNAs: Functional evolution and new modes of gene expression
-
Brown, J.W.S., Echeverria, M. and Qu, L.H. (2003) Plant snoRNAs: functional evolution and new modes of gene expression. Trends Plant Sci. 8, 42-49
-
(2003)
Trends Plant Sci
, vol.8
, pp. 42-49
-
-
Brown, J.W.S.1
Echeverria, M.2
Qu, L.H.3
-
90
-
-
33846012547
-
Mammalian small nucleolar RNAs are mobile genetic elements
-
Weber, M.J. (2006) Mammalian small nucleolar RNAs are mobile genetic elements. PLoS Genet. 2, e205
-
(2006)
PLoS Genet
, vol.2
-
-
Weber, M.J.1
-
91
-
-
33846932045
-
Genome-wide analyses of retrogenes derived from the human box H/ACA snoRNAs
-
Luo, Y. and Li, S. (2007) Genome-wide analyses of retrogenes derived from the human box H/ACA snoRNAs. Nucleic Acids Res. 35, 559-571
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 559-571
-
-
Luo, Y.1
Li, S.2
-
92
-
-
76149132968
-
SnoPatrol: How many snoRNA genes are there?
-
Gardner, P.P., Bateman, A. and Poole, A.M. (2010) SnoPatrol: how many snoRNA genes are there? J. Biol. 9, 4
-
(2010)
J. Biol
, vol.9
, pp. 4
-
-
Gardner, P.P.1
Bateman, A.2
Poole, A.M.3
-
93
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S., Gish, W., Miller, W., Myers, E. and Lipman, D. (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403-410
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.5
-
94
-
-
79959311751
-
Pseudouridine formation in archaeal RNAs: The case of Haloferax volcanii
-
Blaby, I.K., Majumder, M., Chatterjee, K., Jana, S., Grosjean, H., de Crécy-Lagard, V. and Gupta, R. (2011) Pseudouridine formation in archaeal RNAs: the case of Haloferax volcanii. RNA 17, 1367-1380
-
(2011)
RNA
, vol.17
, pp. 1367-1380
-
-
Blaby, I.K.1
Majumder, M.2
Chatterjee, K.3
Jana, S.4
Grosjean, H.5
De Crécy-Lagard, V.6
Gupta, R.7
-
95
-
-
84859269865
-
2'-O-methylation of the wobble residue of elongator pre-tRNAmet in Haloferax volcanii is guided by a box C/D RNA containing unique features
-
Joardar, A., Malliahgari, S. R., Skariah, G. and Gupta, R. (2011) 2'-O-methylation of the wobble residue of elongator pre-tRNAmet in Haloferax volcanii is guided by a box C/D RNA containing unique features. RNA Biol. 8, 1-10
-
(2011)
RNA Biol
, vol.8
, pp. 1-10
-
-
Joardar, A.1
Malliahgari, S.R.2
Skariah, G.3
Gupta, R.4
-
96
-
-
14044272835
-
Fast and reliable prediction of noncoding RNAs
-
Washietl, S., Hofacker, I.L. and Stadler, P.F. (2005) Fast and reliable prediction of noncoding RNAs. Proc. Natl. Acad. Sci. U.S.A. 102, 2454-2459
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 2454-2459
-
-
Washietl, S.1
Hofacker, I.L.2
Stadler, P.F.3
-
97
-
-
66249110326
-
Mining small RNA sequencing data: A new approach to identify small nucleolar RNAs in Arabidopsis
-
Chen, H.-M. and Wu, S.-H. (2009) Mining small RNA sequencing data: a new approach to identify small nucleolar RNAs in Arabidopsis. Nucleic Acids Res. 37, e69
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Chen, H.-M.1
Wu, S.-H.2
-
98
-
-
33847218363
-
Small nucleolar RNAs: Identification, structure, and function
-
(Nellen, W. and Hammann, C., eds), Springer-Verlag, Berlin Heidelberg
-
Söderbom, F. (2006) Small nucleolar RNAs: identification, structure, and function. In Nucleic Acids and Molecular Biology, Volume 17, Small RNAs: Analysis and Regulatory Functions (Nellen, W. and Hammann, C., eds), pp. 31-56, Springer-Verlag, Berlin Heidelberg
-
(2006)
Nucleic Acids and Molecular Biology, Small RNAs: Analysis and Regulatory Functions
, vol.17
, pp. 31-56
-
-
Söderbom, F.1
-
99
-
-
0037154277
-
Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum
-
Fitz-Gibbon, S.T., Ladner, H., Kim, U.-J., Stetter, K.O., Simon, M.I. and Miller, J.H. (2002) Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum. Proc. Natl. Acad. Sci. U.S.A. 99, 984-989
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 984-989
-
-
Fitz-Gibbon, S.T.1
Ladner, H.2
Kim, U.-J.3
Stetter, K.O.4
Simon, M.I.5
Miller, J.H.6
-
100
-
-
80155208165
-
SNOntology: Myriads of novel snoRNAs or just a mirage?
-
Makarova, J.A. and Kramerov, D.A. (2011) SNOntology: myriads of novel snoRNAs or just a mirage? BMC Genomics 12, 543
-
(2011)
BMC Genomics
, vol.12
, pp. 543
-
-
Makarova, J.A.1
Kramerov, D.A.2
-
101
-
-
38549117309
-
The HGNC database in 2008: A resource for the human genome
-
Bruford, E.A., Lush, M.J., Wright, M.W., Sneddon, T.P., Povey, S. and Birney, E. (2008) The HGNC database in 2008: a resource for the human genome. Nucleic Acids Res. 36, D445-D448
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Bruford, E.A.1
Lush, M.J.2
Wright, M.W.3
Sneddon, T.P.4
Povey, S.5
Birney, E.6
-
102
-
-
78651323093
-
Rfam: Wikipedia clans and the 'decimal' release
-
Gardner, P.P., Daub, J., Tate, J., Moore, B.L., Osuch, I.H., Griffiths-Jones, S., Finn, R.D., Nawrocki, E.P., Kolbe, D.L., Eddy, S.R. and Bateman, A. (2011) Rfam: Wikipedia, clans and the 'decimal' release. Nucleic Acids Res. 39, D141-D145
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Gardner, P.P.1
Daub, J.2
Tate, J.3
Moore, B.L.4
Osuch, I.H.5
Griffiths-Jones, S.6
Finn, R.D.7
Nawrocki, E.P.8
Kolbe, D.L.9
Eddy, S.R.10
Bateman, A.11
-
103
-
-
65549111754
-
Infernal 1.0: Inference of RNA alignments
-
Nawrocki, E.P., Kolbe, D.L. and Eddy, S.R. (2009) Infernal 1.0: inference of RNA alignments. Bioinformatics 25, 1335-1337
-
(2009)
Bioinformatics
, vol.25
, pp. 1335-1337
-
-
Nawrocki, E.P.1
Kolbe, D.L.2
Eddy, S.R.3
-
104
-
-
75649086591
-
Signature amino acids enable the archaeal L7Ae box C/D RNP core protein to recognize and bind the K-loop RNA motif
-
Gagnon, K.T., Zhang, X., Qu, G., Biswas, S., Suryadi, J., Brown, 2nd, B.A. and Maxwell, E.S. (2010) Signature amino acids enable the archaeal L7Ae box C/D RNP core protein to recognize and bind the K-loop RNA motif. RNA 16, 79
-
(2010)
RNA
, vol.16
, pp. 79
-
-
Gagnon, K.T.1
Zhang, X.2
Qu, G.3
Biswas, S.4
Suryadi, J.5
Brown, I.I.B.A.6
Maxwell, E.S.7
-
105
-
-
70249117455
-
A dimeric structure for archaeal box C/D small ribonucleoproteins
-
Bleichert, F., Gagnon, K.T., Brown, 2nd, B.A., Maxwell, E.S., Leschziner, A.E., Unger, V.M. and Baserga, S.J. (2009) A dimeric structure for archaeal box C/D small ribonucleoproteins. Science 325, 1384-1387
-
(2009)
Science
, vol.325
, pp. 1384-1387
-
-
Bleichert, F.1
Gagnon, K.T.2
Brown, I.I.B.A.3
Maxwell, E.S.4
Leschziner, A.E.5
Unger, V.M.6
Baserga, S.J.7
-
106
-
-
79251574683
-
Structural basis for sitespecific ribose methylation by box C/D RNA protein complexes
-
Lin, J., Lai, S., Jia, R., Xu, A., Zhang, L., Lu, J. and Ye, K. (2011) Structural basis for sitespecific ribose methylation by box C/D RNA protein complexes. Nature 469, 559-563
-
(2011)
Nature
, vol.469
, pp. 559-563
-
-
Lin, J.1
Lai, S.2
Jia, R.3
Xu, A.4
Zhang, L.5
Lu, J.6
Ye, K.7
-
107
-
-
84864042776
-
The box C/D sRNP dimeric architecture is conserved across domain Archaea
-
Bower-Phipps, K. and Taylor, D. (2012) The box C/D sRNP dimeric architecture is conserved across domain Archaea. RNA 18, 1527-1540
-
(2012)
RNA
, vol.18
, pp. 1527-1540
-
-
Bower-Phipps, K.1
Taylor, D.2
-
108
-
-
0037099680
-
Site-specific cross-linking analyses reveal an asymmetric protein distribution for a box C/D snoRNP
-
Cahill, N.M., Friend, K., Speckmann, W., Li, Z.H., Terns, R.M., Terns, M.P. and Steitz, J.A. (2002) Site-specific cross-linking analyses reveal an asymmetric protein distribution for a box C/D snoRNP. EMBO J. 21, 3816-3828
-
(2002)
EMBO J.
, vol.21
, pp. 3816-3828
-
-
Cahill, N.M.1
Friend, K.2
Speckmann, W.3
Li, Z.H.4
Terns, R.M.5
Terns, M.P.6
Steitz, J.A.7
-
109
-
-
78751533762
-
The spatial-functional coupling of box C/D and C'/D' RNPs is an evolutionarily conserved feature of the eukaryotic box C/D snoRNP nucleotide modification complex
-
Qu, G., van Nues, R.W., Watkins, N.J. and Maxwell, E.S. (2011) The spatial-functional coupling of box C/D and C'/D' RNPs is an evolutionarily conserved feature of the eukaryotic box C/D snoRNP nucleotide modification complex. Mol. Cell. Biol. 31, 365-374
-
(2011)
Mol. Cell. Biol
, vol.31
, pp. 365-374
-
-
Qu, G.1
Van Nues, R.W.2
Watkins, N.J.3
Maxwell, E.S.4
-
110
-
-
81255188688
-
Reconstitution and structural analysis of the yeast box H/ACA RNA-guided pseudouridine synthase
-
Li, S., Duan, J., Li, D. and Yang, B. (2011) Reconstitution and structural analysis of the yeast box H/ACA RNA-guided pseudouridine synthase. Genes Dev. 25, 2409-2421
-
(2011)
Genes Dev
, vol.25
, pp. 2409-2421
-
-
Li, S.1
Duan, J.2
Li, D.3
Yang, B.4
-
111
-
-
81255142796
-
The H/ACA RNP assembly factor SHQ1 functions as an RNA mimic
-
Walbott, H., Machado-Pinilla, R., Liger, D., Blaud, M., Réty, S., Grozdanov, P.N., Godin, K., van Tilbeurgh, H., Varani, G., Meier, U.T. and Leulliot, N. (2011) The H/ACA RNP assembly factor SHQ1 functions as an RNA mimic. GenesDev. 25, 2398-2408
-
(2011)
GenesDev
, vol.25
, pp. 2398-2408
-
-
Walbott, H.1
MacHado-Pinilla, R.2
Liger, D.3
Blaud, M.4
Réty, S.5
Grozdanov, P.N.6
Godin, K.7
Van Tilbeurgh, H.8
Varani, G.9
Meier, U.T.10
Leulliot, N.11
-
112
-
-
84863338217
-
YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops
-
Baird, N.J., Zhang, J., Hamma, T. and Ferré-D'Amaré, A.R. (2012) YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops. RNA 18, 759-770
-
(2012)
RNA
, vol.18
, pp. 759-770
-
-
Baird, N.J.1
Zhang, J.2
Hamma, T.3
Ferré-D'Amaré, A.R.4
-
113
-
-
39049164474
-
The Hsp90 chaperone controls the biogenesis of L7Ae RNPs through conserved machinery
-
Boulon, S., Marmier-Gourrier, N., Pradet-Balade, B., Wurth, L., Verheggen, C., Jády, B.E., Rothé, B., Pescia, C., Robert, M.C., Kiss, T. et al. (2008) The Hsp90 chaperone controls the biogenesis of L7Ae RNPs through conserved machinery. J. Cell Biol. 180, 579-595
-
(2008)
J. Cell Biol
, vol.180
, pp. 579-595
-
-
Boulon, S.1
Marmier-Gourrier, N.2
Pradet-Balade, B.3
Wurth, L.4
Verheggen, C.5
Jády, B.E.6
Rothé, B.7
Pescia, C.8
Robert, M.C.9
Kiss, T.10
-
114
-
-
77956274154
-
Ribosomal protein L7Ae is a subunit of archaeal RNase P
-
Cho, I.-M., Lai, L.B., Susanti, D., Mukhopadhyay, B., and Gopalan, V. (2010) Ribosomal protein L7Ae is a subunit of archaeal RNase P. Proc. Natl. Acad. Sci. U.S.A. 107, 14573-14578
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 14573-14578
-
-
Cho, I.-M.1
Lai, L.B.2
Susanti, D.3
Mukhopadhyay, B.4
Gopalan, V.5
-
115
-
-
4644319574
-
Circular box C/D RNAs in Pyrococcus furiosus
-
Starostina, N.G., Marshburn, S., Johnson, L.S., Eddy, S.R., Terns, R.M. and Terns, M.P. (2004) Circular box C/D RNAs in Pyrococcus furiosus. Proc. Natl. Acad. Sci. U.S.A. 101, 14097-14101
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 14097-14101
-
-
Starostina, N.G.1
Marshburn, S.2
Johnson, L.S.3
Eddy, S.R.4
Terns, R.M.5
Terns, M.P.6
-
116
-
-
84860171056
-
Transcriptome-wide discovery of circular RNAs in Archaea
-
Danan, M., Schwartz, S., Edelheit, S. and Sorek, R. (2012) Transcriptome-wide discovery of circular RNAs in Archaea. Nucleic Acids Res. 40, 3131-3142
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 3131-3142
-
-
Danan, M.1
Schwartz, S.2
Edelheit, S.3
Sorek, R.4
-
117
-
-
13744262101
-
Identification of 20 snoRNA-like RNAs from the primitive eukaryote, Giardia lamblia
-
Yang, C.-Y., Zhou, H., Luo, J. and Qu, L.-H. (2005) Identification of 20 snoRNA-like RNAs from the primitive eukaryote, Giardia lamblia. Biochem. Biophys. Res. Commun. 328, 1224-1231
-
(2005)
Biochem. Biophys. Res. Commun
, vol.328
, pp. 1224-1231
-
-
Yang, C.-Y.1
Zhou, H.2
Luo, J.3
Qu, L.-H.4
-
118
-
-
17844396478
-
A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA modification
-
Liang, X.-H., Uliel, S., Hury, A., Barth, S., Doniger, T., Unger, R. and Michaeli, S. (2005) A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA modification. RNA 11, 619-645
-
(2005)
RNA
, vol.11
, pp. 619-645
-
-
Liang, X.-H.1
Uliel, S.2
Hury, A.3
Barth, S.4
Doniger, T.5
Unger, R.6
Michaeli, S.7
-
119
-
-
0028001399
-
Upstream tRNA genes are essential for expression of small nuclear and cytoplasmic RNA genes in trypanosomes
-
Nakaar, V., Dare, A. and Hong, D. (1994) Upstream tRNA genes are essential for expression of small nuclear and cytoplasmic RNA genes in trypanosomes. Mol. Cell. Biol. 14, 6736-6742
-
(1994)
Mol. Cell. Biol
, vol.14
, pp. 6736-6742
-
-
Nakaar, V.1
Dare, A.2
Hong, D.3
-
120
-
-
38449092636
-
SnoReport: Computational identification of snoRNAs with unknown targets
-
Hertel, J., Hofacker, I.L. and Stadler, P.F. (2008) SnoReport: computational identification of snoRNAs with unknown targets. Bioinformatics 24, 158-164
-
(2008)
Bioinformatics
, vol.24
, pp. 158-164
-
-
Hertel, J.1
Hofacker, I.L.2
Stadler, P.F.3
-
121
-
-
23144460836
-
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
-
Schattner, P., Brooks, A.N. and Lowe, T.M. (2005) The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33, W686-W689
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Schattner, P.1
Brooks, A.N.2
Lowe, T.M.3
-
122
-
-
33751009398
-
SnoSeeker: An advanced computational package for screening of guide and orphan snoRNA genes in the human genome
-
Yang, J.-H., Zhang, X.-C., Huang, Z.-P., Zhou, H., Huang, M.B., Zhang, S., Chen, Y.Q. and Qu, L.H. (2006) snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. Nucleic Acids Res. 34, 5112-5123
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5112-5123
-
-
Yang, J.-H.1
Zhang, X.-C.2
Huang, Z.-P.3
Zhou, H.4
Huang, M.B.5
Zhang, S.6
Chen, Y.Q.7
Qu, L.H.8
-
123
-
-
34548798716
-
A dedicated computational approach for the identification of archaeal H/ACA sRNAs
-
(Gott, J., ed.), Academic Press
-
Muller, S., Charpentier, B., Branlant, C. and Leclerc, F. (2007) A dedicated computational approach for the identification of archaeal H/ACA sRNAs. In RNA Modification, (Gott, J., ed.), pp. 355-387, Academic Press
-
(2007)
RNA Modification
, pp. 355-387
-
-
Muller, S.1
Charpentier, B.2
Branlant, C.3
Leclerc, F.4
-
124
-
-
75249094684
-
RNAsnoop: Efficient target prediction for H/ACA snoRNAs
-
Tafer, H., Kehr, S., Hertel, J., Hofacker, I.L. and Stadler, P.F. (2010) RNAsnoop: efficient target prediction for H/ACA snoRNAs. Bioinformatics 26, 610-616
-
(2010)
Bioinformatics
, vol.26
, pp. 610-616
-
-
Tafer, H.1
Kehr, S.2
Hertel, J.3
Hofacker, I.L.4
Stadler, P.F.5
-
125
-
-
78651416809
-
PLEXY: Efficient target prediction for box C/D snoRNAs
-
Kehr, S., Bartschat, S., Stadler, P.F. and Tafer, H. (2011) PLEXY: efficient target prediction for box C/D snoRNAs. Bioinformatics 27, 279-280
-
(2011)
Bioinformatics
, vol.27
, pp. 279-280
-
-
Kehr, S.1
Bartschat, S.2
Stadler, P.F.3
Tafer, H.4
-
126
-
-
58149352501
-
Psiscan: A computational approach to identify H/ACA-like and AGA-like non-coding RNA in trypanosomatid genomes
-
Myslyuk, I., Doniger, T., Horesh, Y., Hury, A., Hoffer, R., Ziporen, Y., Michaeli, S. and Unger, R. (2008) Psiscan: a computational approach to identify H/ACA-like and AGA-like non-coding RNA in trypanosomatid genomes. BMC Bioinf. 9, 471
-
(2008)
BMC Bioinf
, vol.9
, pp. 471
-
-
Myslyuk, I.1
Doniger, T.2
Horesh, Y.3
Hury, A.4
Hoffer, R.5
Ziporen, Y.6
Michaeli, S.7
Unger, R.8
-
127
-
-
0035678575
-
Multiple snoRNA gene clusters from Arabidopsis
-
Brown, J.W., Clark, G.P., Leader, D.J., Simpson, C.G., and Lowe, T. (2001) Multiple snoRNA gene clusters from Arabidopsis. RNA 7, 1817-1832
-
(2001)
RNA
, vol.7
, pp. 1817-1832
-
-
Brown, J.W.1
Clark, G.P.2
Leader, D.J.3
Simpson, C.G.4
Lowe, T.5
-
128
-
-
33847270751
-
New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA
-
Piekna-Przybylska, D., Decatur, W.A. and Fournier, M.J. (2007) New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. RNA 13, 305-312
-
(2007)
RNA
, vol.13
, pp. 305-312
-
-
Piekna-Przybylska, D.1
Decatur, W.A.2
Fournier, M.J.3
-
129
-
-
83455176796
-
Small ribonucleoproteins in ribosome biogenesis
-
(Olson, M.O.J., ed.), Springer New York, New York
-
Bleichert, F. and Baserga, S. (2011) Small ribonucleoproteins in ribosome biogenesis. In Protein Reviews: the Nucleolus, (Olson, M.O.J., ed.), pp. 135-156, Springer New York, New York
-
(2011)
Protein Reviews: The Nucleolus
, pp. 135-156
-
-
Bleichert, F.1
Baserga, S.2
-
130
-
-
0036889385
-
Conserved stem II of the box C/D motif is essential for nucleolar localization and is required, along with the 15.5 K protein, for the hierarchical assembly of the box C/D snoRNP
-
Watkins, N.J., Dickmanns, A. and Lu, R. (2002) Conserved stem II of the box C/D motif is essential for nucleolar localization and is required, along with the 15.5 K protein, for the hierarchical assembly of the box C/D snoRNP. Mol. Cell. Biol. 22, 8342-8352
-
(2002)
Mol. Cell. Biol
, vol.22
, pp. 8342-8352
-
-
Watkins, N.J.1
Dickmanns, A.2
Lu, R.3
|