메뉴 건너뛰기




Volumn 16, Issue 1, 2010, Pages 79-90

Signature amino acids enable the archaeal L7Ae box C/D RNP core protein to recognize and bind the K-loop RNA motif

Author keywords

Box C D snoRNA; Kink turn; L7Ae L30 proteins; RNA protein interaction; snoRNP

Indexed keywords

L7AE PROTEIN; PROTEIN; RIBONUCLEOPROTEIN; RNA BINDING PROTEIN; UNCLASSIFIED DRUG; ARCHAEAL PROTEIN; ARCHAEAL RNA;

EID: 75649086591     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.1692310     Document Type: Article
Times cited : (27)

References (36)
  • 1
    • 0036794074 scopus 로고    scopus 로고
    • The SBP2 and 15.5 kD/Snu13p proteins share the same RNA binding domain: Identification of SBP2 amino acids important to SECIS RNA binding
    • Allmang C, Carbon P, Krol A. 2002. The SBP2 and 15.5 kD/Snu13p proteins share the same RNA binding domain: Identification of SBP2 amino acids important to SECIS RNA binding. RNA 8: 1308-1318.
    • (2002) RNA , vol.8 , pp. 1308-1318
    • Allmang, C.1    Carbon, P.2    Krol, A.3
  • 2
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
    • DOI 10.1126/science.289.5481.905
    • Ban N, Nissen P, Hansen J, Moore PB, Steitz JA. 2000. The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science 289: 905-920. (Pubitemid 30659939)
    • (2000) Science , vol.289 , Issue.5481 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 4
    • 0037099680 scopus 로고    scopus 로고
    • Site-specific cross-linking analyses reveal an asymmetric protein distribution for a box C/D snoRNP
    • DOI 10.1093/emboj/cdf376
    • Cahill NM, Friend K, Speckman W, Li ZH, Terns RM, Terns MP, Steitz JA. 2002. Site-specific cross-linking analyses reveal an asymmetric protein distribution for a box C/D snoRNP. EMBO J 21: 3816-3828. (Pubitemid 34787054)
    • (2002) EMBO Journal , vol.21 , Issue.14 , pp. 3816-3828
    • Cahill, N.M.1    Friend, K.2    Speckmann, W.3    Li, Z.-H.4    Terns, R.M.5    Terns, M.P.6    Steitz, J.A.7
  • 5
    • 4444326475 scopus 로고    scopus 로고
    • The archaeal sRNA binding protein L7Ae has a 3D structure very similar to that of its eukaryal counterpart while having a broader RNA-binding specificity
    • DOI 10.1016/j.jmb.2004.07.046, PII S0022283604008745
    • Charron C, Manival X, Clery A, Senty-Segault V, Charpentier B, Marmier-Gourrier N, Branlant C, Aubry A. 2004. The archaeal sRNA binding protein L7Ae has a 3D structure very similar to that of its eukaryal counterpart while having a broader RNA-binding specificity. J Mol Biol 342: 757-773. (Pubitemid 39165648)
    • (2004) Journal of Molecular Biology , vol.342 , Issue.3 , pp. 757-773
    • Charron, C.1    Manival, X.2    Clery, A.3    Senty-Segault, V.4    Charpentier, B.5    Marmier-Gourrier, N.6    Branlant, C.7    Aubry, A.8
  • 6
    • 34247894065 scopus 로고    scopus 로고
    • An improved definition of the RNA-binding specificity of SECIS-binding protein 2, an essential component of the selenocysteine incorporation machinery
    • DOI 10.1093/nar/gkm066
    • Clery A, Bourguignon-Igel V, Allmang C, Krol A, Branlant C. 2007. An improved definition of the RNA-binding specificity of SECIS-binding protein 2, an essential component of the selenocysteine incorporation machinery. Nucleic Acids Res 35: 1868-1884. (Pubitemid 47061656)
    • (2007) Nucleic Acids Research , vol.35 , Issue.6 , pp. 1868-1884
    • Clery, A.1    Bourguignon-Igel, V.2    Allmang, C.3    Krol, A.4    Branlant, C.5
  • 7
    • 0034999985 scopus 로고    scopus 로고
    • A guided tour: Small RNA function in Aarchaea
    • DOI 10.1046/j.1365-2958.2001.02381.x
    • Dennis PP, Omer A, Lowe T. 2001. A guided tour: Small RNA function in Archaea. Mol Microbiol 40: 509-519. (Pubitemid 32453106)
    • (2001) Molecular Microbiology , vol.40 , Issue.3 , pp. 509-519
    • Dennis, P.P.1    Omer, A.2    Lowe, T.3
  • 8
    • 1642458391 scopus 로고    scopus 로고
    • Analysis of Snu13p mutations reveals differential interactions with the U4 snRNA and U3 snoRNA
    • Dobbyn HC, O'Keefe RT. 2004. Analysis of Snu13p mutations reveals differential interactions with the U4 snRNA and U3 snoRNA. RNA 10: 308-320.
    • (2004) RNA , vol.10 , pp. 308-320
    • Dobbyn, H.C.1    O'Keefe, R.T.2
  • 9
    • 0030976931 scopus 로고    scopus 로고
    • An evolutionarily conserved U5 snRNP-specific protein is a GTP-binding factor closely related to the ribosomal translocase EF-2
    • DOI 10.1093/emboj/16.13.4092
    • Fabrizio P, Laggerbauer B, Lauber J, Lane WS, Lührmann R. 1997. An evolutionarily conserved U5 snRNP-specific protein is a GTP-binding factor closely related to the ribosomal translocase EF-2. EMBO J 16: 4092-4106. (Pubitemid 27281024)
    • (1997) EMBO Journal , vol.16 , Issue.13 , pp. 4092-4106
    • Fabrizio, P.1    Laggerbauer, B.2    Lauber, J.3    Lane, W.S.4    Luhrmann, R.5
  • 10
    • 33748460634 scopus 로고    scopus 로고
    • Assembly of the Archaeal Box C/D sRNP Can Occur via Alternative Pathways and Requires Temperature-facilitated sRNA Remodeling
    • DOI 10.1016/j.jmb.2006.07.091, PII S0022283606009910
    • Gagnon KT, Zhang X, Agris PF, Maxwell ES. 2006. Assembly of the archaeal box C/D sRNP can occur via alternative pathways and requires temperature-facilitated sRNA remodeling. J Mol Biol 362: 1025-1042. (Pubitemid 44353524)
    • (2006) Journal of Molecular Biology , vol.362 , Issue.5 , pp. 1025-1042
    • Gagnon, K.T.1    Zhang, X.2    Agris, P.F.3    Maxwell, E.S.4
  • 12
    • 2342638215 scopus 로고    scopus 로고
    • Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8 Å resolution
    • DOI 10.1016/j.str.2004.03.015, PII S0969212604000966
    • Hamma T, Ferré-D'Amaré AR. 2004. Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8 Å resolution. Structure 12: 893-903. (Pubitemid 38595777)
    • (2004) Structure , vol.12 , Issue.5 , pp. 893-903
    • Hamma, T.1    Ferre-D'Amare, A.R.2
  • 13
    • 0035394728 scopus 로고    scopus 로고
    • Accumulation of H/ACA snoRNPs depends on the integrity of the conserved central domain of the RNA-binding protein Nhp2p
    • Henras A, Dez C, Noaillac-Depeyre J, Henry Y, Caizergues-Ferrer M. 2001. Accumulation of H/ACA snoRNPs depends on the integrity of the conserved central domain of the RNA-binding protein Nhp2p. Nucleic Acids Res 29: 2733-2746. (Pubitemid 32685036)
    • (2001) Nucleic Acids Research , vol.29 , Issue.13 , pp. 2733-2746
    • Henras, A.1    Dez, C.2    Noaillac-Depeyre, J.3    Henry, Y.4    Caizergues-Ferrer, M.5
  • 14
    • 0242614611 scopus 로고    scopus 로고
    • Sequence and structural elements of methylation guide snoRNAs essential for site-specific ribose methylation of pre-rRNA
    • DOI 10.1093/emboj/17.3.797
    • Kiss-Laszlo Z, Henry Y, Kiss T. 1998. Sequence and structural elements of methylation guide snoRNAs essential for site-specific ribose methylation of pre-rRNA. EMBO J 17: 797-807. (Pubitemid 28062058)
    • (1998) EMBO Journal , vol.17 , Issue.3 , pp. 797-807
    • Kiss-Laszlo, Z.1    Henry, Y.2    Kiss, T.3
  • 15
    • 0035423087 scopus 로고    scopus 로고
    • The kink-turn: A new RNA secondary structure motif
    • Klein DJ, Schmeing TM, Moore PB, Steitz TA. 2001. The kink-turn: A new RNA secondary structure motif. EMBO J 20: 4214-4221.
    • (2001) EMBO J , vol.20 , pp. 4214-4221
    • Klein, D.J.1    Schmeing, T.M.2    Moore, P.B.3    Steitz, T.A.4
  • 16
    • 0028225137 scopus 로고
    • A novel RNA-binding motif in omnipotent suppressors of translation termination, ribosomal proteins and a ribosome modification enzyme?
    • Koonin EV, Bork P, Sander C. 1994. A novel RNA-binding motif in omnipotent suppressors of translation termination, ribosomal proteins and a ribosome modification enzyme? Nucleic Acids Res 22: 2166-2167.
    • (1994) Nucleic Acids Res , vol.22 , pp. 2166-2167
    • Koonin, E.V.1    Bork, P.2    Sander, C.3
  • 17
    • 0037082424 scopus 로고    scopus 로고
    • Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein
    • Kuhn J, Tran E, Maxwell ES. 2002. Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein. Nucleic Acids Res 30: 931-941. (Pubitemid 34679661)
    • (2002) Nucleic Acids Research , vol.30 , Issue.4 , pp. 931-941
    • Kuhn, J.F.1    Tran, E.J.2    Maxwell, E.S.3
  • 18
    • 0032785638 scopus 로고    scopus 로고
    • Copper ion inducible and repressible promoter systems in yeast
    • DOI 10.1016/S0076-6879(99)06010-3
    • Labbe S, Thiele DJ. 1999. Copper inducible and repressible promoter systems in yeast. Methods Enzymol 306: 145-153. (Pubitemid 29356829)
    • (1999) Methods in Enzymology , vol.306 , pp. 145-153
    • Labbe, S.1    Thiele, D.J.2
  • 19
    • 33748947672 scopus 로고    scopus 로고
    • Crystal structure of an H/ACA box ribonucleoprotein particle
    • DOI 10.1038/nature05151, PII NATURE05151
    • Li L, Ye K. 2006. Crystal structure of an H/ACA box ribonucleoprotein particle. Nature 443: 302-307. (Pubitemid 44435144)
    • (2006) Nature , vol.443 , Issue.7109 , pp. 302-307
    • Li, L.1    Ye, K.2
  • 20
    • 34147095881 scopus 로고    scopus 로고
    • Binding of the human Prp31 Nop domain to a composite RNA-protein platform in U4 snRNP
    • DOI 10.1126/science.1137924
    • Liu S, Li P, Dybkov O, Nottrott S, Hartmuth S, Lührmann R, Carlomango T, Wahl MC. 2007. Binding of the human Prp31 Nop domain to a composite RNA-protein platform in U4 snRNP. Science 316: 115-120. (Pubitemid 46559531)
    • (2007) Science , vol.316 , Issue.5821 , pp. 115-120
    • Liu, S.1    Li, P.2    Dybkov, O.3    Nottrott, S.4    Hartmuth, K.5    Luhrmann, R.6    Carlomagno, T.7    Wahl, M.C.8
  • 21
    • 0032710024 scopus 로고    scopus 로고
    • A novel loop-loop recognition motif in the yeast ribosomal protein L30 autoregulatory RNA complex
    • Mao H, White SA, Williamson JR. 1999. A novel loop-loop recognition motif in the yeast ribosomal protein L30 autoregulatory RNA complex. Nat Struct Biol 6: 1139-1147.
    • (1999) Nat Struct Biol , vol.6 , pp. 1139-1147
    • Mao, H.1    White, S.A.2    Williamson, J.R.3
  • 22
    • 2342475659 scopus 로고    scopus 로고
    • Molecular basis of box C/D RNA-protein interactions: Cocrystal structure of archaeal L7Ae and a box C/D RNA
    • DOI 10.1016/j.str.2004.02.033, PII S0969212604001169
    • Moore T, Zhang Y, Fenley MO, Li H. 2004. Molecular basis of box C/D RNA-protein interactions: Cocrystal structure of archaeal L7Ae and a box C/D RNA. Structure 12: 807-818. (Pubitemid 38595769)
    • (2004) Structure , vol.12 , Issue.5 , pp. 807-818
    • Moore, T.1    Zhang, Y.2    Fenley, M.O.3    Li, H.4
  • 23
    • 29144449192 scopus 로고    scopus 로고
    • The K-loop, a general feature of the Pyrococcus C/D guide RNAs, is an RNA structural motif related to the K-turn
    • DOI 10.1093/nar/gki962
    • Nolivos S, Carpousis AJ, Clouet-d'Orval B. 2005. The K-loop, a general feature of the Pyrococcus C/D guide RNAs, is an RNA structural motif related to the K-turn. Nucleic Acids Res 33: 6507-6514. (Pubitemid 41806414)
    • (2005) Nucleic Acids Research , vol.33 , Issue.20 , pp. 6507-6514
    • Nolivos, S.1    Carpousis, A.J.2    Clouet-D'Orval, B.3
  • 24
    • 0037117533 scopus 로고    scopus 로고
    • In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex
    • Omer A, Ziesche S, Ebhardt H, Dennis PP. 2002. In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex. Proc Natl Acad Sci 99: 5289-5294.
    • (2002) Proc Natl Acad Sci , vol.99 , pp. 5289-5294
    • Omer, A.1    Ziesche, S.2    Ebhardt, H.3    Dennis, P.P.4
  • 25
    • 20544468675 scopus 로고    scopus 로고
    • Structural comparison of yeast snoRNP and spliceosomal protein Snu13p with its homologs
    • DOI 10.1016/j.bbrc.2005.05.141, PII S0006291X05010776
    • Oruganti S, Zhang Y, Li H. 2005. Structural comparison of yeast snoRNP and spliceosomal protein Snu13p with its homologs. Biochem Biophys Res Commun 333: 550-554. (Pubitemid 40848326)
    • (2005) Biochemical and Biophysical Research Communications , vol.333 , Issue.2 , pp. 550-554
    • Oruganti, S.V.1    Zhang, Y.2    Li, H.3
  • 26
    • 0037324527 scopus 로고    scopus 로고
    • Binding of L7Ae protein to the K-turn of archaeal snoRNAs: A shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea
    • DOI 10.1093/nar/gkg175
    • Rozhdestvensky TS, Tang TH, Tchirkova IV, Brosius J, Bachellerie JP, Huttenhofer A. 2003. Binding of L7Ae protein to the K-turn of archaeal snoRNAs: A shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea. Nucleic Acids Res 31: 869-877. (Pubitemid 36240424)
    • (2003) Nucleic Acids Research , vol.31 , Issue.3 , pp. 869-877
    • Rozhdestvensky, T.S.1    Tang, T.H.2    Tchirkova, I.V.3    Brosius, J.4    Bachellerie, J.-P.5    Huttenhofer, A.6
  • 28
    • 37349039360 scopus 로고    scopus 로고
    • Functional implications for a prototypical K-turn binding protein from structural and dynamical studies of 15.5K
    • Soss SE, Flynn PF. 2007. Functional implications for a prototypical K-turn binding protein from structural and dynamical studies of 15.5K. Biochemistry 46: 14979-14986.
    • (2007) Biochemistry , vol.46 , pp. 14979-14986
    • Soss, S.E.1    Flynn, P.F.2
  • 29
    • 0036773686 scopus 로고    scopus 로고
    • Exclusive interaction of the 15.5kD protein with the terminal box C/D motif of a methylation guide snoRNP
    • Szewczak LB, DeGregorio SJ, Strobel SA, Steitz JA. 2002. Exclusive interaction of the 15.5kD protein with the terminal box C/D motif of a methylation guide snoRNP. Chem Biol 9: 1095-1107.
    • (2002) Chem Biol , vol.9 , pp. 1095-1107
    • Szewczak, L.B.1    Degregorio, S.J.2    Strobel, S.A.3    Steitz, J.A.4
  • 30
    • 0043026864 scopus 로고    scopus 로고
    • Efficient RNA 2′-O-methylation requires juxtaposed and symmetrically assembled archaeal box C/D and C′/D′ RNPs
    • DOI 10.1093/emboj/cdg368
    • Tran EJ, Zhang X, Maxwell ES. 2003. Efficient RNA 2′-O-methylation requires juxtaposed and symmetrically assembled archaeal box C/D and C′/D′ RNPs. EMBO J 22: 3930-3940. (Pubitemid 36975719)
    • (2003) EMBO Journal , vol.22 , Issue.15 , pp. 3930-3940
    • Tran, E.J.1    Zhang, X.2    Maxwell, E.S.3
  • 31
    • 13944251291 scopus 로고    scopus 로고
    • Conserved spacing between the box C/D and C′/D′ RNPs of the archaeal box C/D sRNP complex is required for efficient 2′-O-methylation of target RNAs
    • DOI 10.1261/rna.7223405
    • Tran EJ, Zhang X, Lackey L, Maxwell ES. 2005. Conserved spacing between the box C/D and C′/D′ RNPs of the archaeal box C/D sRNP complex is required for efficient 2′-O-methylation of target RNAs. RNA 11: 285-293. (Pubitemid 40270821)
    • (2005) RNA , vol.11 , Issue.3 , pp. 285-293
    • Tran, E.1    Zhang, X.2    Lackey, L.3    Maxwell, E.S.4
  • 32
    • 0034509631 scopus 로고    scopus 로고
    • Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment
    • DOI 10.1016/S1097-2765(00)00131-3
    • Vidovic I, Nottrot S, Hartmuth K, Lührmann R, Ficner R. 2000. Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment. Mol Cell 6: 1331-1342. (Pubitemid 32045926)
    • (2000) Molecular Cell , vol.6 , Issue.6 , pp. 1331-1342
    • Vidovic, I.1    Nottrott, S.2    Hartmuth, K.3    Luhrmann, R.4    Ficner, R.5
  • 33
    • 2442542173 scopus 로고    scopus 로고
    • Architecture and assembly of mammalian H/ACA small nucleolar and telomerase ribonucleoproteins
    • DOI 10.1038/sj.emboj.7600181
    • Wang C, Meier UT. 2004. Architecture and assembly of mammalian H/ACA small nucleolar and telomerase ribonucleoproteins. EMBO J 23: 1857-1867. (Pubitemid 38649648)
    • (2004) EMBO Journal , vol.23 , Issue.8 , pp. 1857-1867
    • Wang, C.1    Meier, U.T.2
  • 35
    • 2342599644 scopus 로고    scopus 로고
    • Mutual interactions between subunits of the human RNase MRP ribonucleoprotein complex
    • Welting TJM, van Venrooij WJ, Pruijn GJM. 2004. Mutual interactions between subunits of the human RNase MRP ribonucleoprotein complex. Nucleic Acids Res 32: 2138-2146.
    • (2004) Nucleic Acids Res , vol.32 , pp. 2138-2146
    • Welting, T.J.M.1    Van Venrooij, W.J.2    Pruijn, G.J.M.3
  • 36
    • 33646890462 scopus 로고    scopus 로고
    • The coiled-coil domain of the Nop56/58 core protein is dispensable for sRNP assembly but is critical for archaeal box C/D sRNP-guided nucleotide methylation
    • DOI 10.1261/rna.2230106
    • Zhang X, Champion EA, Tran E, Brown BA II, Baserga SJ, Maxwell ES. 2006. The coiled-coil domain of the Nop56/58 core protein is dispensable for sRNP assembly but is critical for archaeal box C/D sRNP-guided nucleotide methylation. RNA 12: 1092-1103. (Pubitemid 43788127)
    • (2006) RNA , vol.12 , Issue.6 , pp. 1092-1103
    • Zhang, X.1    Champion, E.A.2    Tran, E.J.3    Brown II, B.A.4    Baserga, S.J.5    Stuart Maxwell, E.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.