Proteomic changes induced by histone demethylase JMJD3 in TNF alpha-treated human monocytic (THP-1) cells

Molecular Immunology

Volumn 56, Issue 1-2, 2013, Pages 113-122

  Das, Amitabh ^a   Das, Nando Dulal ^a   Jung, Kyoung Hwa ^a   Park, Ji Hyun ^a   Lee, Hyung Tae ^a   Han, DalMuri ^a   Choi, Mi Ran ^a   Kang, Sung Chul ^a   Chai, Young Gyu ^a  

^a Hanyang University   (South Korea)

Author keywords

Inflammation; Ingenuity Pathway Analysis (IPA); JMJD3; MALDI TOF MS; NF B; THP 1 cell

Indexed keywords

GLIA MATURATION FACTOR; GLIA MATURATION FACTOR GAMMA; GLUTATHIONE PEROXIDASE; HEAT SHOCK PROTEIN; HEAT SHOCK PROTEIN BETA 1; HISTONE DEMETHYLASE; TRIPARTITE MOTIF PROTEIN 5; TUMOR NECROSIS FACTOR ALPHA; UNCLASSIFIED DRUG;

ARTICLE; CELL DIFFERENTIATION; CONTROLLED STUDY; DOWN REGULATION; HUMAN; HUMAN CELL; INFLAMMATORY CELL; LEUKEMIA CELL; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MONOCYTIC LEUKEMIA; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEOMICS;

BLOTTING, WESTERN; CARRIER PROTEINS; CELL CYCLE PROTEINS; CELL LINE, TUMOR; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GENE EXPRESSION REGULATION, NEOPLASTIC; HUMANS; JUMONJI DOMAIN-CONTAINING HISTONE DEMETHYLASES; MONOCYTES; NUCLEAR PROTEINS; PROTEOME; PROTEOMICS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA INTERFERENCE; SIGNAL TRANSDUCTION; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TUMOR NECROSIS FACTOR-ALPHA;

EID: 84879071240     PISSN: 01615890     EISSN: 18729142     Source Type: Journal    
DOI: 10.1016/j.molimm.2013.04.013     Document Type: Article

References (46)

1. Arrigo A.P. Hsp27: novel regulator of intracellular redox state. IUBMB Life 2001, 52:303-307.
2. Asahara T., Murohara T., Sullivan A., Silver M., van der Zee R., Li T., Witzenbichler B., Schatteman G., Isner J.M. Isolation of putative progenitor endothelial cells for angiogenesis. Science 1997, 275:964-967.
3. Aumais J.P., Williams S.N., Luo W., Nishino M., Caldwell K.A., Caldwell G.A., Lin S.H., Yu-Lee L.Y. Role for NudC, a dynein-associated nuclear movement protein, in mitosis and cytokinesis. Journal of Cell Science 2003, 116:1991-2003.
4. Baik S.Y., Jung K.H., Choi M.R., Yang B.H., Kim S.H., Lee J.S., Oh D.Y., Choi I.G., Chung H., Chai Y.G. Fluoxetine-induced up-regulation of 14-3-3zeta and tryptophan hydroxylase levels in RBL-2H3 cells. Neuroscience Letters 2005, 374:53-57.
5. Bamburg J.R., Wiggan O.P. ADF/cofilin and actin dynamics in disease. Trends in Cell Biology 2002, 12:598-605.
6. Berger S.L. The complex language of chromatin regulation during transcription. Nature 2007, 447:407-412.
7. Blount B.C., Mack M.M., Wehr C.M., MacGregor J.T., Hiatt R.A., Wang G., Wickramasinghe S.N., Everson R.B., Ames B.N. Folate deficiency causes uracil misincorporation into human DNA and chromosome breakage: implications for cancer and neuronal damage. Proceedings of the National Academy of Sciences of the United States of America 1997, 94:3290-3295.
8. Boulter E., Garcia-Mata R., Guilluy C., Dubash A., Rossi G., Brennwald P.J., Burridge K. Regulation of Rho GTPase crosstalk, degradation and activity by RhoGDI1. Nature Cell Biology 2010, 12:477-483.
9. Brenchley J.M., Price D.A., Schacker T.W., Asher T.E., Silvestri G., Rao S., Kazzaz Z., Bornstein E., Lambotte O., Altmann D., Blazar B.R., Rodriguez B., Teixeira-Johnson L., Landay A., Martin J.N., Hecht F.M., Picker L.J., Lederman M.M., Deeks S.G., Douek D.C. Microbial translocation is a cause of systemic immune activation in chronic HIV infection. Nature Medicine 2006, 12:1365-1371.
10. Cheung P., Allis C.D., Sassone-Corsi P. Signaling to chromatin through histone modifications. Cell 2000, 103:263-271.
11. Cloos P.A., Christensen J., Agger K., Helin K. Erasing the methyl mark: histone demethylases at the center of cellular differentiation and disease. Genes and Development 2008, 22:1115-1140.
12. Curtin N.J., Harris A.L., Aherne G.W. Mechanism of cell death following thymidylate synthase inhibition: 2'-deoxyuridine-5'-triphosphate accumulation, DNA damage, and growth inhibition following exposure to CB3717 and dipyridamole. Cancer Research 1991, 51:2346-2352.
13. Das N.D., Jung K.H., Park J.H., Choi M.R., Lee H.T., Kim M.S., Lee S.R., Chai Y.G. Proteomic analysis of Terminalia chebula extract-dependent changes in human lymphoblastic T cell protein expression. Journal of Medicinal Food 2012, 15(7):651-657.
14. Das N.D., Jung K.H., Choi M.R., Yoon H.S., Kim S.H., Chai Y.G. Gene networking and inflammatory pathway analysis in a JMJD3 knockdown human monocytic cell line. Cell Biochemistry and Function 2012, 30:224-232.
15. Das N.D., Jung K.H., Chai Y.G. The role of NF-kappaB and H3K27me3 demethylase Jmjd3, on the anthrax lethal toxin tolerance of RAW 264.7 cells. PLoS One 2010, 5(3):e9913.
16. De Santa F., Narang V., Yap Z.H., Tusi B.K., Burgold T., Austenaa L., Bucci G., Caganova M., Notarbartolo S., Casola S., Testa G., Sung W.K., Wei C.L., Natoli G. Jmjd3 contributes to the control of gene expression in LPS-activated macrophages. The EMBO Journal 2009, 28:3341-3352.
17. De Santa F., Totaro M.G., Prosperini E., Notarbartolo S., Testa G., Natoli G. The histone H3 lysine-27 demethylase Jmjd3 links inflammation to inhibition of polycomb-mediated gene silencing. Cell 2007, 130:1083-1094.
18. Harding M.A., Theodorescu D. RhoGDI signaling provides targets for cancer therapy. European Journal of Cancer 2010, 46:1252-1259.
19. Ikeda K., Kundu R.K., Ikeda S., Kobara M., Matsubara H., Quertermous T. Glia maturation factor-gamma is preferentially expressed in microvascular endothelial and inflammatory cells and modulates actin cytoskeleton reorganization. Circulation Research 2006, 99:424-433.
20. Ingraham H.A., Dickey L., Goulian M. DNA fragmentation and cytotoxicity from increased cellular deoxyuridylate. Biochemistry 1986, 25:3225-3230.
21. Ishibashi T., Hayakawa H., Ito R., Miyazawa M., Yamagata Y., Sekiguchi M. Mammalian enzymes for preventing transcriptional errors caused by oxidative damage. Nucleic Acids Research 2005, 33:3779-3784.
22. Jung K.H., Das N.D., Park J.H., Lee H.T., Choi M.R., Chung M.K., Park K.S., Jung M.H., Lee B.C., Choi I.G., Chai Y.G. Effects of acute ethanol treatment on NCCIT cells and NCCIT cell-derived embryoid bodies (EBs). Toxicology In Vitro: An International Journal Published in Association with BIBRA 2010, 24:1696-1704.
23. Kammanadiminti S.J., Chadee K. Suppression of NF-kappaB activation by Entamoeba histolytica in intestinal epithelial cells is mediated by heat shock protein 27. The Journal of Biological Chemistry 2006, 281:26112-26120.
24. Li C.J., Li R.W., Wang Y.H., Elsasser T.H. Pathway analysis identifies perturbation of genetic networks induced by butyrate in a bovine kidney epithelial cell line. Functional and Integrative Genomics 2007, 7:193-205.
25. Li D., Roberts R. WD-repeat proteins: structure characteristics biological function, and their involvement in human diseases. Cellular and Molecular Life Sciences: CMLS 2001, 58:2085-2097.
26. Mason J.B., Choi S.W. Folate and carcinogenesis: developing a unifying hypothesis. Advances in Enzyme Regulation 2000, 40:127-141.
27. Matsumoto R., Wang D., Blonska M., Li H., Kobayashi M., Pappu B., Chen Y., Lin X. Phosphorylation of CARMA1 plays a critical role in T cell receptor-mediated NF-kappaB activation. Immunity 2005, 23:575-585.
28. Medzhitov R., Horng T. Transcriptional control of the inflammatory response. Nature Reviews Immunology 2009, 9:692-703.
29. Mehlen P., Preville X., Chareyron P., Briolay J., Klemenz R., Arrigo A.P. Constitutive expression of human hsp27, Drosophila hsp27, or human alpha B-crystallin confers resistance to TNF- and oxidative stress-induced cytotoxicity in stably transfected murine L929 fibroblasts. Journal of Immunology 1995, 154:363-374.
30. Paul C., Arrigo A.P. Comparison of the protective activities generated by two survival proteins: Bcl-2 and Hsp27 in L929 murine fibroblasts exposed to menadione or staurosporine. Experimental Gerontology 2000, 35:757-766.
31. Pertel T., Hausmann S., Morger D., Zuger S., Guerra J., Lascano J., Reinhard C., Santoni F.A., Uchil P.D., Chatel L., Bisiaux A., Albert M.L., Strambio-De-Castillia C., Mothes W., Pizzato M., Grutter M.G., Luban J. TRIM5 is an innate immune sensor for the retrovirus capsid lattice. Nature 2011, 472:361-365.
32. Sahai E., Marshall C.J. RHO-GTPases and cancer. Nature Reviews Cancer 2002, 2:133-142.
33. Scudiero I., Zotti T., Ferravante A., Vessichelli M., Vito P., Stilo R. Alternative splicing of CARMA2/CARD14 transcripts generates protein variants with differential effect on NF-kappaB activation and endoplasmic reticulum stress-induced cell death. Journal of Cellular Physiology 2011, 226:3121-3131.
34. Shanmugam N., Kim Y.S., Lanting L., Natarajan R. Regulation of cyclooxygenase-2 expression in monocytes by ligation of the receptor for advanced glycation end products. The Journal of Biological Chemistry 2003, 278:34834-34844.
35. Shevchenko A., Jensen O.N., Podtelejnikov A.V., Sagliocco F., Wilm M., Vorm O., Mortensen P., Boucherie H., Mann M. Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels. Proceedings of the National Academy of Sciences of the United States of America 1996, 93:14440-14445.
36. Shi M., Deng W., Bi E., Mao K., Ji Y., Lin G., Wu X., Tao Z., Li Z., Cai X., Sun S., Xiang C., Sun B. TRIM30 alpha negatively regulates TLR-mediated NF-kappa B activation by targeting TAB2 and TAB3 for degradation. Nature Immunology 2008, 9:369-377.
37. Shi Y., Whetstine J.R. Dynamic regulation of histone lysine methylation by demethylases. Molecular Cell 2007, 25:1-14.
38. Stern L.L., Mason J.B., Selhub J., Choi S.W. Genomic DNA hypomethylation a characteristic of most cancers, is present in peripheral leukocytes of individuals who are homozygous for the C677T polymorphism in the methylenetetrahydrofolate reductase gene. Cancer Epidemiology, Biomarkers & Prevention: A Publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2000, 9:849-853.
39. Strathdee G., Appleton K., Illand M., Millan D.W., Sargent J., Paul J., Brown R. Primary ovarian carcinomas display multiple methylator phenotypes involving known tumor suppressor genes. The American Journal of Pathology 2001, 158:1121-1127.
40. Theiss A.L., Jenkins A.K., Okoro N.I., Klapproth J.M., Merlin D., Sitaraman S.V. Prohibitin inhibits tumor necrosis factor alpha-induced nuclear factor-kappa B nuclear translocation via the novel mechanism of decreasing importin alpha3 expression. Molecular Biology of the Cell 2009, 20:4412-4423.
41. Theiss A.L., Vijay-Kumar M., Obertone T.S., Jones D.P., Hansen J.M., Gewirtz A.T., Merlin D., Sitaraman S.V. Prohibitin is a novel regulator of antioxidant response that attenuates colonic inflammation in mice. Gastroenterology 2009, 137:199-208. 208.e1-6.
42. Tsutsumi T., Matsuda M., Aizaki H., Moriya K., Miyoshi H., Fujie H., Shintani Y., Yotsuyanagi H., Miyamura T., Suzuki T., Koike K. Proteomics analysis of mitochondrial proteins reveals overexpression of a mitochondrial protein chaperon, prohibitin, in cells expressing hepatitis C virus core protein. Hepatology 2009, 50:378-386.
43. Wang S., Zhang B., Faller D.V. Prohibitin requires Brg-1 and Brm for the repression of E2F and cell growth. The EMBO Journal 2002, 21:3019-3028.
44. Waris G., Ahsan H. Reactive oxygen species: role in the development of cancer and various chronic conditions. Journal of Carcinogenesis 2006, 5:14.
45. Zhang L.Q., Dai D.P., Gan W., Takagi Y., Hayakawa H., Sekiguchi M., Cai J.P. Lowered nudix type 5 (NUDT5) expression leads to cell cycle retardation in HeLa cells. Molecular and Cellular Biochemistry 2012, 363:377-384.
46. Zhou T., Zimmerman W., Liu X., Erikson R.L. A mammalian NudC-like protein essential for dynein stability and cell viability. Proceedings of the National Academy of Sciences of the United States of America 2006, 103:9039-9044.