Genetic interactions between mediator and the late G1-specific transcription factor swi6 in Saccharomyces cerevisiae

Genetics

Volumn 171, Issue 2, 2005, Pages 477-488

  Li, Lihong ^a   Quinton, Tina ^a,b   Miles, Shawna ^a   Breeden, Linda L ^a   Christensen, ^b   O'Connor, ^b   Johnson, ^b   Kindness, ^b  

^a Fred Hutchinson Cancer Research Center   (United States)

^b Mail Stop A2 168 ^*

Author keywords

[No Author keywords available]

Indexed keywords

BETA GALACTOSIDASE; FUNGAL PROTEIN; PROTEIN GAL 11; PROTEIN PGD 1; PROTEIN SIN 4; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR SWI 6; UNCLASSIFIED DRUG;

ARTICLE; CELL CYCLE G1 PHASE; CONTROLLED STUDY; CORRELATION ANALYSIS; FUNGUS MUTANT; GENE DELETION; GENE IDENTIFICATION; GENE INTERACTION; GENE TARGETING; GENETIC CODE; MOLECULAR CLONING; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE;

DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; G1 PHASE; GENETIC COMPLEMENTATION TEST; IMMUNOPRECIPITATION; MUTATION; NUCLEAR PROTEINS; RNA, MESSENGER; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SUPPRESSION, GENETIC; TEMPERATURE; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

FUNGI; SACCHAROMYCES CEREVISIAE; SACCHAROMYCETALES;

EID: 31544457584     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.105.043893     Document Type: Article

References (55)

1. BHOITE, L. T., Y. YU and D. J. STILLMAN, 2001 The Swi5 activator recruits the Mediator complex to the HO promoter without RNA polymerase II. Genes Dev. 15: 2457-2469.
2. BORGGREFE, T., R. DAVIS, H. ERDJUMENT-BROMAGE, P. TEMPST and R. D. KORNBERG, 2002 A complex of the Srb8, -9, -10, and -11 transcriptional regulatory proteins from yeast. J. Biol. Chem. 277: 44202-44207.
3. BREEDEN, L. L., 2003 Periodic transcription: a cycle within a cycle. Curr. Biol. 13: R31-R38.
4. BREEDEN, L., and G. MIKESELL, 1991 Cell cycle-specific expression of the SWI4 transcription factor is required for the cell cycle regulation of HO transcription. Genes Dev. 5: 1183-1190.
5. BREEDEN, L., and K. NASMYTH, 1987 Cell cycle control of the yeast HO gene: cis- and trans-acting regulators. Cell 48: 389-397.
6. CARLSON, M., 1997 Genetics of transcriptional regulation in yeast: connections to the RNA polymerase II CTD. Annu. Rev. Cell Dev. Biol. 13: 1-23.
7. CARLSON, M., B. C. OSMOND, L. NEIGEBORN and D. BOTSTEIN, 1984 A suppressor of SNF1 mutations causes constitutive high-level invertase synthesis in yeast. Genetics 107: 19-32.
8. COSMA, M. P., T. TANAKA and K. NASMYTH, 1999 Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter. Cell 97: 299-311.
9. COSMA, M. P., S. PANIZZA and K. NASMYTH, 2001 Cdk1 triggers association of RNA polymerase to cell cycle promoters only after recruitment of the mediator by SBF. Mol. Cell 7: 1213-1220.
10. COSTANZO, M., J. L. NISHIKAWA, X. TANG, J. S. MILLMAN, O. SCHUB et al., 2004 CDK activity antagonizes Whi5, an inhibitor of G1/S transcription in yeast. Cell 117: 899-913.
11. DE BRUIN, R. A., W. H. MCDONALD, T. I. KALASHNIKOVA, J. YATES, III and C. WITTENBERG, 2004 Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5. Cell 117: 887-898.
12. DIRICK, L., T. MOLL, H. AUER and K. NASMYTH, 1992 A central role for SWI6 in modulating cell cycle Start-specific transcription in yeast. Nature 357: 508-513.
13. GELBART, M. E., T. RECHSTEINER, T. J. RICHMOND and T. TSUKIYAMA, 2001 Interactions of Isw2 chromatin remodeling complex with nucleosomal arrays: analyses using recombinant yeast histones and immobilized templates. Mol. Cell. Biol. 21: 2098-2106.
14. GROMOLLER, A., and N. LEHMING, 2000 Srb7p is a physical and physiological target of Tup1p. EMBO J. 19: 6845-6852.
15. HABER, J. E., and B. GARVIK, 1977 A new gene affecting the efficiency of mating type interconversions in homothallic strains of S. cerevisiae. Genetics 87: 33-50.
16. HENGARTNER, C. J., C. M. THOMPSON, J. ZHANG, D. M. CHAO, S. M. LIAO et al., 1995 Association of an activator with an RNA polymerase II holoenzyme. Genes Dev. 9: 897-910.
17. HINNEBUSCH, A. G., 1992 General and pathway-specific regulatory mechanisms controlling the synthesis of amino acid biosynthetic enzymes in Saccharomyces cerevisiae, pp. 319-414 in The Molecular and Cellular Biology of the Yeast Saccharomyces: Gene Expression, edited by J. R. Broach, E. W. Jones and J. R. Pringle. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
18. HOLSTEGE, F. C., E.G. JENNINGS, J. J. WYRICK, T. I. LEE, C. J. HENGARTNER et al., 1998 Dissecting the regulatory circuitry of a eukaryotic genome. Cell 95: 717-728.
19. ITO, H., Y. FUKADA, K. MURATA and A. KIMURA, 1983 Transformation of intact yeast cells treated with alkali cations. J. Bacteriol. 153: 163-168.
20. IYER, V. R., C. E. HORAK, C. S. SCAFE, D. BOTSTEIN, M. SNYDER et al., 2001 Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature 409: 533-538.
21. JIANG, H. W., and D. J. STILLMAN, 1992 Involvement of the SIN4 global transcriptional regulator in the chromatin structure of Saccharomyces cerevisiae. Mol. Cell. Biol. 12: 4503-4514.
22. JORGENSEN, P., J. L. NISHIKAWA, B. J. BREITKREUTZ and M. TYERS, 2002 Systematic identification of pathways that couple cell growth and division in yeast. Science 297: 395-400.
23. KANG, J. S., S. H. KIM, M. S. HWANG, S. J. HAN, Y. C. LEE et al., 2001 The structural and functional organization of the yeast mediator complex. J. Biol. Chem. 276: 42003-42010.
24. KOH, S. S., A. Z. ANSARI, M. PTASHNE and R. A. YOUNG, 1998 An activator target in the RNA polymerase II holoenzyme. Mol. Cell 1: 895-904.
25. LEE, T. I., N. J. RINALDI, F. ROBERT, D. T. ODOM, Z. BAR-JOSEPH et al., 2002 Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 298: 799-804.
26. LEE, Y. C., and Y. J. KIM, 1998 Requirement for a functional interaction between mediator components Med6 and Srb4 in RNA polymerase II transcription. Mol. Cell. Biol. 18: 5364-5370.
27. LEE, Y. C., J. M. PARK, S. MIN, S. J. HAN and Y. J. KIM, 1999 An activator binding module of yeast RNA polymerase II holoenzyme. Mol. Cell. Biol. 19: 2967-2976.
28. LEWIS, B. A., and D. REINBERG, 2003 The mediator coactivator complex: functional and physical roles in transcriptional regulation. J. Cell Sci. 116: 3667-3675.
29. LIAO, S. M., J. ZHANG, D. A. JEFFERY, A. J. KOLESKE, C. M. THOMPSON et al., 1995 A kinase-cyclin pair in the RNA polymerase II holoenzyme. Nature 374: 193-196.
30. LONGTINE, M. S., A. MCKENZIE, III, D. J. DEMARINI, N. G. SHAH, A. WACH et al., 1998 Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14: 953-961.
31. LOWNDES, N. F., A. L. JOHNSON, L. BREEDEN and L. H. JOHNSTON, 1992 SWI6 protein is required for transcription of the periodically expressed DNA synthesis genes in budding yeast. Nature 357: 505-508.
32. LUCAU-DANILA, A., R. WYSOCKI, T. ROGANTI and F. FOURY, 2000 Systematic disruption of 456 ORFs in the yeast Saccharomyces cerevisiae. Yeast 16: 547-552.
33. LYCAN, D., G. MIKESELL, M. BUNGER and L. BREEDEN, 1994 Differential effects of Cdc68 on cell cycle-regulated promoters in S. cerevisae. Mol. Cell. Biol. 14: 7455-7465.
34. MAI, B., S. MILES and L. L. BREEDEN, 2002 Characterization of the ECB binding complex responsible for the M/G1-specific transcription of CLN3 and SWI4. Mol. Cell. Biol. 22: 430-441.
35. MCINERNY, C. J., J. F. PARTRIDGE, G. E. MIKESELL, D. P. CREEMER and L. L. BREEDEN, 1997 A novel Mcm1-dependent promoter element in the SWI4, CLN3, CDC6 and CDC47 promoters activates M/G1-specific transcription. Genes Dev. 11: 1277-1288.
36. MYERS, L. C., C. M. GUSTAFSSON, D. A. BUSHNELL, M. LUI, H. ERDJUMENT-BROMAGE et al., 1998 The Med proteins of yeast and their function through the RNA polymerase II carboxy-terminal domain. Genes Dev. 12: 45-54.
37. NASMYTH, K. A., D. J. STILLMAN and D. KIPLING, 1987 Both positive and negative regulators of HO transcription are required for mother-cell-specific mating type switching in yeast. Cell 48: 579-587.
38. NATARAJAN, K., M. R. MEYER, B. M. JACKSON, D. SLADE, C. ROBERTS et al., 2001 Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast. Mol. Cell. Biol. 21: 4347-4368.
39. OGAS, J., B. J. ANDREWS and I. HERSKOWITZ, 1991 Transcriptional activation of CLN1, CLN2, and a putative new G1 cyclin (HCS26) by SWI4, a positive regulator of G1-specific transcription. Cell 66: 1015-1026.
40. PARK, J. M., H. S. KIM, S. J. HAN, M. S. HWANG, Y. C. LEE et al., 2000 In vivo requirement of activator-specific binding targets of mediator. Mol. Cell. Biol. 20: 8709-8719.
41. PARTRIDGE, J. F., G. E. MIKESELL and L. L. BREEDEN, 1997 Cell cycle-dependent transcription of CLN1 involves Swi4 binding to MCB-like elements. J. Biol. Chem. 272: 9071-9077.
42. REEVES, W. M., and S. HAHN, 2003 Activator-independent functions of the yeast mediator sin4 complex in preinitiation complex formation and transcription reinitiation. Mol. Cell. Biol. 23: 349-358.
43. RUA, D., B. T. TOBE and S. J. KRON, 2001 Cell cycle control of yeast filamentous growth. Curr. Opin. Microbiol. 4: 720-727.
44. SHERMAN, F., G. R. FINK and J. B. HICKS, 1994 Methods in Yeast Genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
45. SIMON, I., J. BARNETT, N. HANNETT, C. T. HARBISON, N. J. RINALDI et al., 2001 Serial regulation of transcriptional regulators in the yeast cell cycle. Cell 106: 697-708.
46. STERN, M., R. JENSEN and I. HERSKOWITZ, 1984 Five SW1 genes are required for expression of the HO gene in yeast. J. Mol. Biol. 178: 853-868.
47. STERNBERG, P. W., M. J. STERN, I. CLARK and I. HERSKOWITZ, 1987 Activation of the yeast HO gene by release from multiple negative controls. Cell 48: 567-577.
48. STILLMAN, D. J., A. T. BANKIER, A. SEDDON, E. G. GROENHOUT and K. NASMYTH, 1989 Characterization of a transcription factor involved in mother cell-specific transcription of the yeast HO gene. EMBO J. 1: 485-494.
49. STRATHERN, J. N., J. HICKS and I. HERSKOWITZ, 1981 Control of cell type in yeast by the mating type locus. The α1-α2 hypothesis. J. Mol. Biol. 147: 357-372.
50. STUART, D., and C. WITTENBERG, 1994 Cell cycle-dependent transcription of CLN2 is conferred by multiple distinct cis-acting regulatory elements. Mol. Cell. Biol. 14: 4788-4801.
51. SWANSON, M. J., H. QIU, L. SUMIBCAY, A. KRUEGER, S. J. KIM et al., 2003 A multiplicity of coactivators is required by Gcn4p at individual promoters in vivo. Mol. Cell. Biol. 23: 2800-2820.
52. TABTIANG, R. K., and I. HERSKOWITZ, 1998 Nuclear proteins Nut1p and Nut2p cooperate to negatively regulate a Swi4p-dependent lacZ reporter gene in Saccharomyces cerevisiae. Mol. Cell. Biol. 18: 4707-4718.
53. TUDOR, M., P. J. MURRAY, C. ONUFRYK, R. JAENISCH and R. A. YOUNG, 1999 Ubiquitous expression and embryonic requirement for RNA polymerase II coactivator subunit Srb7 in mice. Genes Dev. 13: 2365-2368.
54. WINZELER, E. A., D. D. SHOEMAKER, A. ASTROMOFF, H. LIANG, K. ANDERSON et al., 1999 Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285: 901-906.
55. 1 Phase Progression, edited by J. Boonstra. Eurekah.com/Kluwer Academic/Plenum Publishers, New York.