메뉴 건너뛰기




Volumn 10, Issue 5, 2013, Pages 687-693

Evidence for the widespread distribution of CRISPR-Cas system in the Phylum Cyanobacteria

Author keywords

Adaptive immunity; Cas; CRISPR; Cyanobacteria; Cyanophage

Indexed keywords

CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN;

EID: 84879005867     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.24571     Document Type: Article
Times cited : (71)

References (54)
  • 1
    • 77249170201 scopus 로고    scopus 로고
    • CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
    • PMID:20125085
    • Marraffini LA, Sontheimer EJ. CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea. Nat Rev Genet 2010; 11:181-90; PMID:20125085; http://dx.doi.org/10.1038/nrg2749.
    • (2010) Nat Rev Genet , vol.11 , pp. 181-190
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 2
    • 39149142575 scopus 로고    scopus 로고
    • CRISPR - A widespread system that provides acquired resistance against phages in bacteria and archaea
    • PMID:18157154
    • Sorek R, Kunin V, Hugenholtz P. CRISPR - a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat Rev Microbiol 2008; 6:181-6; PMID:18157154; http://dx.doi.org/10.1038/nrmicro1793.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 181-186
    • Sorek, R.1    Kunin, V.2    Hugenholtz, P.3
  • 4
    • 34248400310 scopus 로고    scopus 로고
    • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
    • PMID:16292354
    • Haft DH, Selengut J, Mongodin EF, Nelson KE. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol 2005; 1:e60; PMID:16292354; http://dx.doi.org/10.1371/journal.pcbi.0010060.
    • (2005) PLoS Comput Biol , vol.1
    • Haft, D.H.1    Selengut, J.2    Mongodin, E.F.3    Nelson, K.E.4
  • 5
    • 49649114086 scopus 로고    scopus 로고
    • Small CRISPR RNAs guide antiviral defense in prokaryotes
    • PMID:18703739
    • Brouns SJ, Jore MM, Lundgren M, Westra ER, Slijkhuis RJ, Snijders AP, et al. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 2008; 321:960-4; PMID:18703739; http://dx.doi.org/10.1126/science.1159689.
    • (2008) Science , vol.321 , pp. 960-964
    • Brouns, S.J.1    Jore, M.M.2    Lundgren, M.3    Westra, E.R.4    Slijkhuis, R.J.5    Snijders, A.P.6
  • 6
    • 34047118522 scopus 로고    scopus 로고
    • CRISPR provides acquired resistance against viruses in prokaryotes
    • PMID:17379808
    • Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, et al. CRISPR provides acquired resistance against viruses in prokaryotes. Science 2007; 315:1709-12; PMID:17379808; http://dx.doi.org/10.1126/science.1138140.
    • (2007) Science , vol.315 , pp. 1709-1712
    • Barrangou, R.1    Fremaux, C.2    Deveau, H.3    Richards, M.4    Boyaval, P.5    Moineau, S.6
  • 7
    • 84862078522 scopus 로고    scopus 로고
    • CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections
    • PMID:22623967
    • Fabre L, Zhang J, Guigon G, Le Hello S, Guibert V, Accou-Demartin M, et al. CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections. PLoS One 2012; 7:e36995; PMID:22623967; http://dx.doi.org/10.1371/journal.pone.0036995.
    • (2012) PLoS One , vol.7
    • Fabre, L.1    Zhang, J.2    Guigon, G.3    Le Hello, S.4    Guibert, V.5    Accou-Demartin, M.6
  • 8
    • 84866316311 scopus 로고    scopus 로고
    • Diversity of Acinetobacter baumannii in four French military hospitals, as assessed by multiple locus variable number of tandem repeats analysis
    • PMID:22984530
    • Hauck Y, Soler C, Jault P, Mérens A, Gérome P, Nab CM, et al. Diversity of Acinetobacter baumannii in four French military hospitals, as assessed by multiple locus variable number of tandem repeats analysis. PLoS One 2012; 7:e44597; PMID:22984530; http://dx.doi.org/10.1371/journal.pone.0044597.
    • (2012) PLoS One , vol.7
    • Hauck, Y.1    Soler, C.2    Jault, P.3    Mérens, A.4    Gérome, P.5    Nab, C.M.6
  • 9
    • 76649135130 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis complex CRISPR genotyping: Improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay
    • PMID:19959631
    • Zhang J, Abadia E, Refregier G, Tafaj S, Boschiroli ML, Guillard B, et al. Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay. J Med Microbiol 2010; 59:285-94; PMID:19959631; http://dx.doi.org/10.1099/jmm.0.016949-0.
    • (2010) J Med Microbiol , vol.59 , pp. 285-294
    • Zhang, J.1    Abadia, E.2    Refregier, G.3    Tafaj, S.4    Boschiroli, M.L.5    Guillard, B.6
  • 10
    • 84864042533 scopus 로고    scopus 로고
    • Diverse CRISPRs evolving in human microbiomes
    • PMID:22719260
    • Rho M, Wu YW, Tang H, Doak TG, Ye Y. Diverse CRISPRs evolving in human microbiomes. PLoS Genet 2012; 8:e1002441; PMID:22719260; http://dx.doi.org/10. 1371/journal.pgen.1002441.
    • (2012) PLoS Genet , vol.8
    • Rho, M.1    Wu, Y.W.2    Tang, H.3    Doak, T.G.4    Ye, Y.5
  • 12
    • 84855271565 scopus 로고    scopus 로고
    • Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
    • PMID:22004549
    • Berg Miller ME, Yeoman CJ, Chia N, Tringe SG, Angly FE, Edwards RA, et al. Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome. Environ Microbiol 2012; 14:207-27; PMID:22004549; http://dx.doi.org/10.1111/j.1462-2920.2011.02593.x.
    • (2012) Environ Microbiol , vol.14 , pp. 207-227
    • Berg Miller, M.E.1    Yeoman, C.J.2    Chia, N.3    Tringe, S.G.4    Angly, F.E.5    Edwards, R.A.6
  • 13
    • 79960468271 scopus 로고    scopus 로고
    • Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage
    • PMID:21410492
    • Anderson RE, Brazelton WJ, Baross JA. Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage. FEMS Microbiol Ecol 2011; 77:120-33; PMID:21410492; http://dx.doi.org/10.1111/j.1574-6941.2011.01090.x.
    • (2011) FEMS Microbiol Ecol , vol.77 , pp. 120-133
    • Anderson, R.E.1    Brazelton, W.J.2    Baross, J.A.3
  • 14
    • 78149449833 scopus 로고    scopus 로고
    • Use of cellular CRISPR (clusters of regularly interspaced short palindromic repeats) spacer-based microarrays for detection of viruses in environmental samples
    • PMID:20851987
    • Snyder JC, Bateson MM, Lavin M, Young MJ. Use of cellular CRISPR (clusters of regularly interspaced short palindromic repeats) spacer-based microarrays for detection of viruses in environmental samples. Appl Environ Microbiol 2010; 76:7251-8; PMID:20851987; http://dx.doi.org/10.1128/AEM.01109- 10.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 7251-7258
    • Snyder, J.C.1    Bateson, M.M.2    Lavin, M.3    Young, M.J.4
  • 15
    • 84874624936 scopus 로고    scopus 로고
    • Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease
    • PMID:23360966
    • Cho SW, Kim S, Kim JM, Kim JS. Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease. Nat Biotechnol 2013; 31:230-2; PMID:23360966; http://dx.doi.org/10.1038/nbt.2507.
    • (2013) Nat Biotechnol , vol.31 , pp. 230-232
    • Cho, S.W.1    Kim, S.2    Kim, J.M.3    Kim, J.S.4
  • 16
    • 84874608929 scopus 로고    scopus 로고
    • RNA-guided editing of bacterial genomes using CRISPR-Cas systems
    • PMID:23360965
    • Jiang W, Bikard D, Cox D, Zhang F, Marraffini LA. RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat Biotechnol 2013; 31:233-9; PMID:23360965; http://dx.doi.org/10.1038/nbt.2508.
    • (2013) Nat Biotechnol , vol.31 , pp. 233-239
    • Jiang, W.1    Bikard, D.2    Cox, D.3    Zhang, F.4    Marraffini, L.A.5
  • 17
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • PMID:23287718
    • Cong L, Ran FA, Cox D, Lin S, Barretto R, Habib N, et al. Multiplex genome engineering using CRISPR/Cas systems. Science 2013; 339:819-23; PMID:23287718; http://dx.doi.org/10.1126/science.1231143.
    • (2013) Science , vol.339 , pp. 819-823
    • Cong, L.1    Ran, F.A.2    Cox, D.3    Lin, S.4    Barretto, R.5    Habib, N.6
  • 18
    • 84873734105 scopus 로고    scopus 로고
    • RNA-guided human genome engineering via Cas9
    • PMID:23287722
    • Mali P, Yang L, Esvelt KM, Aach J, Guell M, DiCarlo JE, et al. RNA-guided human genome engineering via Cas9. Science 2013; 339:823-6; PMID:23287722; http://dx.doi.org/10.1126/science.1232033.
    • (2013) Science , vol.339 , pp. 823-826
    • Mali, P.1    Yang, L.2    Esvelt, K.M.3    Aach, J.4    Guell, M.5    DiCarlo, J.E.6
  • 19
    • 84874617789 scopus 로고    scopus 로고
    • Efficient genome editing in zebrafish using a CRISPR-Cas system
    • PMID:23360964
    • Hwang WY, Fu Y, Reyon D, Maeder ML, Tsai SQ, Sander JD, et al. Efficient genome editing in zebrafish using a CRISPR-Cas system. Nat Biotechnol 2013; 31:227-9; PMID:23360964; http://dx.doi.org/10.1038/nbt.2501.
    • (2013) Nat Biotechnol , vol.31 , pp. 227-229
    • Hwang, W.Y.1    Fu, Y.2    Reyon, D.3    Maeder, M.L.4    Tsai, S.Q.5    Sander, J.D.6
  • 20
    • 84873245270 scopus 로고    scopus 로고
    • Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
    • In press; PMID:23277585
    • Shih PM, Wu D, Latifi A, Axen SD, Fewer DP, Talla E, et al. Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing. Proc Natl Acad Sci USA 2012; In press; PMID:23277585.
    • (2012) Proc Natl Acad Sci USA
    • Shih, P.M.1    Wu, D.2    Latifi, A.3    Axen, S.D.4    Fewer, D.P.5    Talla, E.6
  • 21
    • 0018409915 scopus 로고
    • Generic Assignments, Strain Histories and Properties of Pure Cultures of Cyanobacteria
    • Rippka R, Deruelles J, Waterbury JB, Herdman M, Stanier RY. Generic Assignments, Strain Histories and Properties of Pure Cultures of Cyanobacteria. J Gen Microbiol 1979; 111:1-61; http://dx.doi.org/10.1099/00221287-111-1-1.
    • (1979) J Gen Microbiol , vol.111 , pp. 1-61
    • Rippka, R.1    Deruelles, J.2    Waterbury, J.B.3    Herdman, M.4    Stanier, R.Y.5
  • 22
    • 0025198355 scopus 로고
    • Viral Mortality of Marine-Bacteria and Cyanobacteria
    • Proctor LM, Fuhrman JA. Viral Mortality of Marine-Bacteria and Cyanobacteria. Nature 1990; 343:60-2; http://dx.doi.org/10.1038/343060a0.
    • (1990) Nature , vol.343 , pp. 60-62
    • Proctor, L.M.1    Fuhrman, J.A.2
  • 23
    • 0027802137 scopus 로고
    • Marine Cyanophages Infecting Oceanic and Coastal Strains of Synechococcus - Abundance, Morphology, Cross-Infectivity and Growth-Characteristics
    • Suttle CA, Chan AM. Marine Cyanophages Infecting Oceanic and Coastal Strains of Synechococcus - Abundance, Morphology, Cross-Infectivity and Growth-Characteristics. Mar Ecol Prog Ser 1993; 92:99-109; http://dx.doi.org/10. 3354/meps092099.
    • (1993) Mar Ecol Prog Ser , vol.92 , pp. 99-109
    • Suttle, C.A.1    Chan, A.M.2
  • 24
    • 0027930755 scopus 로고
    • Dynamics and Distribution of Cyanophages and Their Effect on Marine Synechococcus spp
    • PMID:16349372
    • Suttle CA, Chan AM. Dynamics and Distribution of Cyanophages and Their Effect on Marine Synechococcus spp. Appl Environ Microbiol 1994; 60:3167-74; PMID:16349372.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 3167-3174
    • Suttle, C.A.1    Chan, A.M.2
  • 25
    • 84872139964 scopus 로고    scopus 로고
    • Viral diversity threshold for adaptive immunity in prokaryotes
    • PMID:23221803
    • Weinberger AD, Wolf YI, Lobkovsky AE, Gilmore MS, Koonin EV. Viral diversity threshold for adaptive immunity in prokaryotes. MBio 2012; 3:e00456-12; PMID:23221803; http://dx.doi.org/10.1128/mBio.00456-12.
    • (2012) MBio , vol.3
    • Weinberger, A.D.1    Wolf, Y.I.2    Lobkovsky, A.E.3    Gilmore, M.S.4    Koonin, E.V.5
  • 26
    • 75549086595 scopus 로고    scopus 로고
    • REBASE - A database for DNA restriction and modification: Enzymes, genes and genomes
    • PMID:19846593
    • Roberts RJ, Vincze T, Posfai J, Macelis D. REBASE - a database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Res 2010; 38(Database issue):D234-6; PMID:19846593; http://dx.doi.org/10.1093/nar/ gkp874.
    • (2010) Nucleic Acids Res , vol.38 , Issue.DATABASE ISSUE
    • Roberts, R.J.1    Vincze, T.2    Posfai, J.3    Macelis, D.4
  • 27
    • 34548487267 scopus 로고    scopus 로고
    • Selection and characterization of cyanophage resistance in marine Synechococcus strains
    • PMID:17630310
    • Stoddard LI, Martiny JB, Marston MF. Selection and characterization of cyanophage resistance in marine Synechococcus strains. Appl Environ Microbiol 2007; 73:5516-22; PMID:17630310; http://dx.doi.org/10.1128/AEM.00356-07.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5516-5522
    • Stoddard, L.I.1    Martiny, J.B.2    Marston, M.F.3
  • 28
    • 79959842126 scopus 로고    scopus 로고
    • Genomic island variability facilitates Prochlorococcus-virus coexistence
    • PMID:21720364
    • Avrani S, Wurtzel O, Sharon I, Sorek R, Lindell D. Genomic island variability facilitates Prochlorococcus-virus coexistence. Nature 2011; 474:604-8; PMID:21720364; http://dx.doi.org/10.1038/nature10172.
    • (2011) Nature , vol.474 , pp. 604-608
    • Avrani, S.1    Wurtzel, O.2    Sharon, I.3    Sorek, R.4    Lindell, D.5
  • 29
    • 79955364234 scopus 로고    scopus 로고
    • Antisense RNA protects mRNA from RNase E degradation by RNA-RNA duplex formation during phage infection
    • PMID:21325266
    • Stazic D, Lindell D, Steglich C. Antisense RNA protects mRNA from RNase E degradation by RNA-RNA duplex formation during phage infection. Nucleic Acids Res 2011; 39:4890-9; PMID:21325266; http://dx.doi.org/10.1093/nar/gkr037.
    • (2011) Nucleic Acids Res , vol.39 , pp. 4890-4899
    • Stazic, D.1    Lindell, D.2    Steglich, C.3
  • 31
    • 16044367245 scopus 로고    scopus 로고
    • Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
    • PMID:8688087
    • Bult CJ, White O, Olsen GJ, Zhou L, Fleischmann RD, Sutton GG, et al. Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science 1996; 273:1058-73; PMID:8688087; http://dx.doi.org/10.1126/science.273. 5278.1058.
    • (1996) Science , vol.273 , pp. 1058-1073
    • Bult, C.J.1    White, O.2    Olsen, G.J.3    Zhou, L.4    Fleischmann, R.D.5    Sutton, G.G.6
  • 32
    • 78650244167 scopus 로고    scopus 로고
    • Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers
    • PMID:21166892
    • Gudbergsdottir S, Deng L, Chen Z, Jensen JV, Jensen LR, She Q, et al. Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers. Mol Microbiol 2011; 79:35-49; PMID:21166892; http://dx.doi.org/10.1111/j.1365-2958. 2010.07452.x.
    • (2011) Mol Microbiol , vol.79 , pp. 35-49
    • Gudbergsdottir, S.1    Deng, L.2    Chen, Z.3    Jensen, J.V.4    Jensen, L.R.5    She, Q.6
  • 33
    • 84866043524 scopus 로고    scopus 로고
    • The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome
    • PMID:22834929
    • Lopez-Sanchez MJ, Sauvage E, Da Cunha V, Clermont D, Ratsima Hariniaina E, Gonzalez-Zorn B, et al. The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome. Mol Microbiol 2012; 85:1057-71; PMID:22834929; http://dx.doi.org/10.1111/j.1365-2958.2012.08172.x.
    • (2012) Mol Microbiol , vol.85 , pp. 1057-1071
    • Lopez-Sanchez, M.J.1    Sauvage, E.2    Da Cunha, V.3    Clermont, D.4    Ratsima Hariniaina, E.5    Gonzalez-Zorn, B.6
  • 34
    • 84866171953 scopus 로고    scopus 로고
    • Intricate interactions between the bloom-forming cyanobacterium Microcystis aeruginosa and foreign genetic elements, revealed by diversified clustered regularly interspaced short palindromic repeat (CRISPR) signatures
    • PMID:22636003
    • Kuno S, Yoshida T, Kaneko T, Sako Y. Intricate interactions between the bloom-forming cyanobacterium Microcystis aeruginosa and foreign genetic elements, revealed by diversified clustered regularly interspaced short palindromic repeat (CRISPR) signatures. Appl Environ Microbiol 2012; 78:5353-60; PMID:22636003; http://dx.doi.org/10.1128/AEM.00626-12.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 5353-5360
    • Kuno, S.1    Yoshida, T.2    Kaneko, T.3    Sako, Y.4
  • 35
    • 77955369854 scopus 로고    scopus 로고
    • Genome erosion in a nitrogen-fixing vertically transmitted endosymbiotic multicellular cyanobacterium
    • PMID:20628610
    • Ran L, Larsson J, Vigil-Stenman T, Nylander JA, Ininbergs K, Zheng WW, et al. Genome erosion in a nitrogen-fixing vertically transmitted endosymbiotic multicellular cyanobacterium. PLoS One 2010; 5:e11486; PMID:20628610; http://dx.doi.org/10.1371/journal.pone.0011486.
    • (2010) PLoS One , vol.5
    • Ran, L.1    Larsson, J.2    Vigil-Stenman, T.3    Nylander, J.A.4    Ininbergs, K.5    Zheng, W.W.6
  • 36
    • 79959659081 scopus 로고    scopus 로고
    • Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits
    • PMID:21718514
    • Larsson J, Nylander JA, Bergman B. Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits. BMC Evol Biol 2011; 11:187; PMID:21718514; http://dx.doi.org/10.1186/1471-2148-11-187.
    • (2011) BMC Evol Biol , vol.11 , pp. 187
    • Larsson, J.1    Nylander, J.A.2    Bergman, B.3
  • 37
    • 0020570738 scopus 로고
    • The Biology of a New Gas-Vacuolate Cyanobacterium, Dactylococcopsis salina sp. nov., in Solar Lake
    • Walsby A, van Rijn J, Cohen Y. The Biology of a New Gas-Vacuolate Cyanobacterium, Dactylococcopsis salina sp. nov., in Solar Lake. Proc R Soc Lond B Biol Sci 1983; 217:417-47; http://dx.doi.org/10.1098/rspb.1983.0019.
    • (1983) Proc R Soc Lond B Biol Sci , vol.217 , pp. 417-447
    • Walsby, A.1    Van Rijn, J.2    Cohen, Y.3
  • 38
    • 34548145189 scopus 로고    scopus 로고
    • Cyanophage Pf-WMP4, a T7-like phage infecting the freshwater cyanobacterium Phormidium foveolarum: Complete genome sequence and DNA translocation
    • PMID:17499329
    • Liu X, Shi M, Kong S, Gao Y, An C. Cyanophage Pf-WMP4, a T7-like phage infecting the freshwater cyanobacterium Phormidium foveolarum: complete genome sequence and DNA translocation. Virology 2007; 366:28-39; PMID:17499329; http://dx.doi.org/10.1016/j.virol.2007.04.019.
    • (2007) Virology , vol.366 , pp. 28-39
    • Liu, X.1    Shi, M.2    Kong, S.3    Gao, Y.4    An, C.5
  • 39
    • 44649171625 scopus 로고    scopus 로고
    • Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat
    • PMID:18523433
    • Kunin V, Raes J, Harris JK, Spear JR, Walker JJ, Ivanova N, et al. Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat. Mol Syst Biol 2008; 4:198; PMID:18523433; http://dx.doi.org/10.1038/msb.2008.35.
    • (2008) Mol Syst Biol , vol.4 , pp. 198
    • Kunin, V.1    Raes, J.2    Harris, J.K.3    Spear, J.R.4    Walker, J.J.5    Ivanova, N.6
  • 40
    • 79960560749 scopus 로고    scopus 로고
    • Community ecology of hot
    • spring cyanobacterial mats: predominant populations and their functional potential. PMID:21697961
    • Klatt CG, Wood JM, Rusch DB, Bateson MM, Hamamura N, Heidelberg JF, et al. Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential. ISME J 2011; 5:1262-78; PMID:21697961; http://dx.doi.org/10.1038/ismej.2011.73.
    • (2011) ISME J , vol.5 , pp. 1262-1278
    • Klatt, C.G.1    Wood, J.M.2    Rusch, D.B.3    Bateson, M.M.4    Hamamura, N.5    Heidelberg, J.F.6
  • 41
    • 84874161995 scopus 로고    scopus 로고
    • Adaptation and modification of three CRISPR loci in two closely related cyanobacteria
    • PMID:23535141
    • Hein S, Scholz I, Voß B, Hess WR. Adaptation and modification of three CRISPR loci in two closely related cyanobacteria. RNA Biol 2013; 10; PMID:23535141; http://dx.doi.org/10.4161/rna.24160.
    • (2013) RNA Biol , vol.10
    • Hein, S.1    Scholz, I.2    Voß, B.3    Hess, W.R.4
  • 42
    • 84874172103 scopus 로고    scopus 로고
    • CRISPR-Cas systems in the cyanobacterium Synechocystis sp. PCC6803 exhibit distinct processing pathways involving at least two Cas6 and a Cmr2 protein
    • PMID:23441196
    • Scholz I, Lange SJ, Hein S, Hess WR, Backofen R. CRISPR-Cas systems in the cyanobacterium Synechocystis sp. PCC6803 exhibit distinct processing pathways involving at least two Cas6 and a Cmr2 protein. PLoS One 2013; 8:e56470; PMID:23441196; http://dx.doi.org/10.1371/journal.pone.0056470.
    • (2013) PLoS One , vol.8
    • Scholz, I.1    Lange, S.J.2    Hein, S.3    Hess, W.R.4    Backofen, R.5
  • 43
    • 84876330604 scopus 로고    scopus 로고
    • Comparative Genomic Analysis of Phylogenetically Closely-Related Hydrogenobaculum sp. from Yellowstone National Park
    • epub ahead of print. PMID:23435891
    • Romano C, D'Imperio S, Woyke T, Mavromatis K, Lasken R, Shock EL, et al. Comparative Genomic Analysis of Phylogenetically Closely-Related Hydrogenobaculum sp. from Yellowstone National Park. [epub ahead of print]. Appl Environ Microbiol 2013; PMID:23435891; http://dx.doi.org/10.1128/AEM.03591-12.
    • (2013) Appl Environ Microbiol
    • Romano, C.1    D'Imperio, S.2    Woyke, T.3    Mavromatis, K.4    Lasken, R.5    Shock, E.L.6
  • 44
    • 84870851200 scopus 로고    scopus 로고
    • Microevolution in cyanobacteria: Re-sequencing a motile substrain of Synechocystis sp. PCC 6803
    • PMID:23069868
    • Trautmann D, Voss B, Wilde A, Al-Babili S, Hess WR. Microevolution in cyanobacteria: re-sequencing a motile substrain of Synechocystis sp. PCC 6803. DNA Res 2012; 19:435-48; PMID:23069868; http://dx.doi.org/10.1093/dnares/dss024.
    • (2012) DNA Res , vol.19 , pp. 435-448
    • Trautmann, D.1    Voss, B.2    Wilde, A.3    Al-Babili, S.4    Hess, W.R.5
  • 45
    • 34547579396 scopus 로고    scopus 로고
    • CRISPRFinder: A web tool to identify clustered regularly interspaced short palindromic repeats
    • PMID:17537822
    • Grissa I, Vergnaud G, Pourcel C. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res 2007; 35(Web Server issue):W52-7; PMID:17537822; http://dx.doi.org/10.1093/nar/ gkm360.
    • (2007) Nucleic Acids Res , vol.35 , Issue.WEB SERVER ISSUE
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 48
    • 79959931985 scopus 로고    scopus 로고
    • HMMER web server: Interactive sequence similarity searching
    • PMID:21593126
    • Finn RD, Clements J, Eddy SR. HMMER web server: interactive sequence similarity searching. Nucleic Acids Res 2011; 39(Web Server issue):W29-37; PMID:21593126; http://dx.doi.org/10.1093/nar/gkr367.
    • (2011) Nucleic Acids Res , vol.39 , Issue.WEB SERVER ISSUE
    • Finn, R.D.1    Clements, J.2    Eddy, S.R.3
  • 49
    • 70449403422 scopus 로고    scopus 로고
    • Mobyle: A new full web bioinformatics framework
    • PMID:19689959
    • Néron B, Ménager H, Maufrais C, Joly N, Maupetit J, Letort S, et al. Mobyle: a new full web bioinformatics framework. Bioinformatics 2009; 25:3005-11; PMID:19689959; http://dx.doi.org/10.1093/bioinformatics/btp493.
    • (2009) Bioinformatics , vol.25 , pp. 3005-3011
    • Néron, B.1    Ménager, H.2    Maufrais, C.3    Joly, N.4    Maupetit, J.5    Letort, S.6
  • 50
    • 33846113652 scopus 로고    scopus 로고
    • TIGRFAMs and Genome Properties: Tools for the assignment of molecular function and biological process in prokaryotic genomes
    • PMID:17151080
    • Selengut JD, Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, et al. TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes. Nucleic Acids Res 2007; 35(Database issue):D260-4; PMID:17151080; http://dx.doi.org/10.1093/nar/gkl1043.
    • (2007) Nucleic Acids Res , vol.35 , Issue.DATABASE ISSUE
    • Selengut, J.D.1    Haft, D.H.2    Davidsen, T.3    Ganapathy, A.4    Gwinn-Giglio, M.5    Nelson, W.C.6
  • 51
    • 44349140636 scopus 로고    scopus 로고
    • R-Coffee: A method for multiple alignment of non-coding RNA
    • PMID:18420654
    • Wilm A, Higgins DG, Notredame C. R-Coffee: a method for multiple alignment of non-coding RNA. Nucleic Acids Res 2008; 36:e52; PMID:18420654; http://dx.doi.org/10.1093/nar/gkn174.
    • (2008) Nucleic Acids Res , vol.36
    • Wilm, A.1    Higgins, D.G.2    Notredame, C.3
  • 53
    • 78651323093 scopus 로고    scopus 로고
    • Rfam: Wikipedia, clans and the "decimal" release
    • PMID:21062808
    • Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, et al. Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Res 2011; 39(Database issue):D141-5; PMID:21062808; http://dx.doi.org/10.1093/nar/ gkq1129.
    • (2011) Nucleic Acids Res , vol.39 , Issue.DATABASE ISSUE
    • Gardner, P.P.1    Daub, J.2    Tate, J.3    Moore, B.L.4    Osuch, I.H.5    Griffiths-Jones, S.6
  • 54
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • PMID:14530136
    • Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003; 52:696-704; PMID:14530136; http://dx.doi.org/10.1080/10635150390235520.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.