메뉴 건너뛰기




Volumn 366, Issue 1, 2007, Pages 28-39

Cyanophage Pf-WMP4, a T7-like phage infecting the freshwater cyanobacterium Phormidium foveolarum: Complete genome sequence and DNA translocation

Author keywords

Cyanophage; Genome; Infection strategy; Promoters; T7 supergroup

Indexed keywords

RNA POLYMERASE;

EID: 34548145189     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2007.04.019     Document Type: Article
Times cited : (47)

References (56)
  • 1
    • 6344288922 scopus 로고    scopus 로고
    • Cyanophage infection and photoinhibition in marine cyanobacteria
    • Bailey S., Clokie M.R., Millard A., and Mann N.H. Cyanophage infection and photoinhibition in marine cyanobacteria. Res. Microbiol. 155 9 (2004) 720-725
    • (2004) Res. Microbiol. , vol.155 , Issue.9 , pp. 720-725
    • Bailey, S.1    Clokie, M.R.2    Millard, A.3    Mann, N.H.4
  • 2
    • 0035875343 scopus 로고    scopus 로고
    • GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
    • Besemer J., Lomsadze A., and Borodovsky M. GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res. 29 (2001) 2607-2618
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2607-2618
    • Besemer, J.1    Lomsadze, A.2    Borodovsky, M.3
  • 3
    • 0019231684 scopus 로고
    • A theory of modular evolution for bacteriophages
    • Botstein D. A theory of modular evolution for bacteriophages. Ann. N. Y. Acad. Sci. 354 (1980) 484-490
    • (1980) Ann. N. Y. Acad. Sci. , vol.354 , pp. 484-490
    • Botstein, D.1
  • 4
    • 0023688813 scopus 로고
    • Characterization of ion channels involved in the penetration of phage T4 DNA into Escherichia coli cells
    • Boulanger P., and Letellier L. Characterization of ion channels involved in the penetration of phage T4 DNA into Escherichia coli cells. J. Biol. Chem. 263 (1988) 9767-9775
    • (1988) J. Biol. Chem. , vol.263 , pp. 9767-9775
    • Boulanger, P.1    Letellier, L.2
  • 5
    • 0014953125 scopus 로고
    • New RNA polymerase from Escherichia coli infected with bacteriophage T7
    • Chamberlin M., McGrath J., and Waskell L. New RNA polymerase from Escherichia coli infected with bacteriophage T7. Nature 228 (1970) 227-231
    • (1970) Nature , vol.228 , pp. 227-231
    • Chamberlin, M.1    McGrath, J.2    Waskell, L.3
  • 6
    • 0036255283 scopus 로고    scopus 로고
    • Genomic sequence and evolution of marine cyanophage P60: a new insight on lytic and lysogenic phages
    • Chen F., and Lu J. Genomic sequence and evolution of marine cyanophage P60: a new insight on lytic and lysogenic phages. Appl. Environ. Microbiol. 68 5 (2002) 2589-2594
    • (2002) Appl. Environ. Microbiol. , vol.68 , Issue.5 , pp. 2589-2594
    • Chen, F.1    Lu, J.2
  • 7
    • 28544445595 scopus 로고    scopus 로고
    • Information theory based T7-like promoter models: classification of bacteriophages and differential evolution of promoters and their polymerases
    • Chen Z., and Schneider T.D. Information theory based T7-like promoter models: classification of bacteriophages and differential evolution of promoters and their polymerases. Nucleic Acids Res. 33 19 (2005) 6172-6187
    • (2005) Nucleic Acids Res. , vol.33 , Issue.19 , pp. 6172-6187
    • Chen, Z.1    Schneider, T.D.2
  • 8
    • 0038823734 scopus 로고    scopus 로고
    • Proteomic comparison between human young and old brains by two-dimensional gel electrophoresis and identification of proteins
    • Chen W., Ji J., Xu X., He S., and Ru B. Proteomic comparison between human young and old brains by two-dimensional gel electrophoresis and identification of proteins. Int. J. Dev. Neurosci. 21 4 (2003) 209-216
    • (2003) Int. J. Dev. Neurosci. , vol.21 , Issue.4 , pp. 209-216
    • Chen, W.1    Ji, J.2    Xu, X.3    He, S.4    Ru, B.5
  • 9
    • 2342472596 scopus 로고    scopus 로고
    • Cyanophage diversity, inferred from g20 gene analyses, in the largest natural lake in France, Lake Bourget
    • Dorigo U., Jacquet S., and Humbert J.F. Cyanophage diversity, inferred from g20 gene analyses, in the largest natural lake in France, Lake Bourget. Appl. Environ. Microbiol. 70 2 (2004) 1017-1022
    • (2004) Appl. Environ. Microbiol. , vol.70 , Issue.2 , pp. 1017-1022
    • Dorigo, U.1    Jacquet, S.2    Humbert, J.F.3
  • 10
    • 0020964297 scopus 로고
    • Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements
    • Dunn J.J., and Studier F.W. Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements. J. Mol. Biol. 166 (1983) 477-535
    • (1983) J. Mol. Biol. , vol.166 , pp. 477-535
    • Dunn, J.J.1    Studier, F.W.2
  • 12
    • 0000122573 scopus 로고
    • PHYLIP-Phylogeny inference package (version 3.2)
    • Felsenstein J. PHYLIP-Phylogeny inference package (version 3.2). Cladistics 5 (1989) 164-166
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 13
    • 0002873539 scopus 로고
    • The ecology of heterotrphic microflagellates
    • Fenchel T. The ecology of heterotrphic microflagellates. Adv. Microb. Ecol. 9 (1986) 57-97
    • (1986) Adv. Microb. Ecol. , vol.9 , pp. 57-97
    • Fenchel, T.1
  • 14
    • 0033542481 scopus 로고    scopus 로고
    • Marine viruses and their biogeochemical and ecological effects
    • Fuhrman J.A. Marine viruses and their biogeochemical and ecological effects. Nature 399 (1999) 541-548
    • (1999) Nature , vol.399 , pp. 541-548
    • Fuhrman, J.A.1
  • 15
    • 10544233778 scopus 로고    scopus 로고
    • Transcription-independent DNA translocation of bacteriophage T7 DNA into Escherichia coli
    • Garcia L.R., and Molineux I.J. Transcription-independent DNA translocation of bacteriophage T7 DNA into Escherichia coli. J. Bacteriol. 178 (1996) 6921-6929
    • (1996) J. Bacteriol. , vol.178 , pp. 6921-6929
    • Garcia, L.R.1    Molineux, I.J.2
  • 16
    • 0033607255 scopus 로고    scopus 로고
    • Translocation and specific cleavage of bacteriophage T7 DNA in vivo by EcoKI
    • Garcia L.R., and Molineux I.J. Translocation and specific cleavage of bacteriophage T7 DNA in vivo by EcoKI. Proc. Natl. Acad. Sci. U.S.A. 96 (1999) 12430-12435
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 12430-12435
    • Garcia, L.R.1    Molineux, I.J.2
  • 18
    • 1942501103 scopus 로고    scopus 로고
    • The push-pull mechanism of bacteriophage ø29 DNA injection
    • Gonzalez-Huici V., Salas M., and Hermoso J.M. The push-pull mechanism of bacteriophage ø29 DNA injection. Mol. Microbiol. 52 2 (2004) 529-540
    • (2004) Mol. Microbiol. , vol.52 , Issue.2 , pp. 529-540
    • Gonzalez-Huici, V.1    Salas, M.2    Hermoso, J.M.3
  • 20
    • 0017146440 scopus 로고
    • Rapid micromethod for the purification of Escherichia coli ribonucleic acid ploymerase and the preparation of bacterial extracts active in ribonucleic acid synthesis
    • Gross C., Engbeak F., Flammang T., and Burgess R. Rapid micromethod for the purification of Escherichia coli ribonucleic acid ploymerase and the preparation of bacterial extracts active in ribonucleic acid synthesis. J. Bacteriol. 128 1 (1976) 382-389
    • (1976) J. Bacteriol. , vol.128 , Issue.1 , pp. 382-389
    • Gross, C.1    Engbeak, F.2    Flammang, T.3    Burgess, R.4
  • 21
    • 0038340041 scopus 로고    scopus 로고
    • The complete sequence of marine bacteriophage VpV262 infecting Vibrio parahaemolyticus indicates that an ancestral component of a T7 viral supergroup is widespread in the marine environment
    • Hardies S.C., Comeau A.M., Serwer P., and Suttle C.A. The complete sequence of marine bacteriophage VpV262 infecting Vibrio parahaemolyticus indicates that an ancestral component of a T7 viral supergroup is widespread in the marine environment. Virology 310 2 (2003) 359-371
    • (2003) Virology , vol.310 , Issue.2 , pp. 359-371
    • Hardies, S.C.1    Comeau, A.M.2    Serwer, P.3    Suttle, C.A.4
  • 22
    • 0033514996 scopus 로고    scopus 로고
    • Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage
    • Hendrix R.W., Smith M.C., Burns R.N., Ford M.E., and Hatfull G.F. Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage. Proc. Natl. Acad. Sci. U.S.A. 96 5 (1999) 2192-2197
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , Issue.5 , pp. 2192-2197
    • Hendrix, R.W.1    Smith, M.C.2    Burns, R.N.3    Ford, M.E.4    Hatfull, G.F.5
  • 23
    • 0038392697 scopus 로고    scopus 로고
    • Bacteriophages with tails: chasing their origins and evolution
    • Hendrix R.W., Hatfull G.F., and Smith M.C. Bacteriophages with tails: chasing their origins and evolution. Res. Microbiol. 154 4 (2003) 253-257
    • (2003) Res. Microbiol. , vol.154 , Issue.4 , pp. 253-257
    • Hendrix, R.W.1    Hatfull, G.F.2    Smith, M.C.3
  • 24
    • 4344657166 scopus 로고    scopus 로고
    • Bacteriophage T7 DNA ejection into cells is initiated by an enzyme-like mechanism
    • Kemp P., Gupta M., and Molineux I.J. Bacteriophage T7 DNA ejection into cells is initiated by an enzyme-like mechanism. Mol. Microbiol. 53 4 (2004) 1251-1265
    • (2004) Mol. Microbiol. , vol.53 , Issue.4 , pp. 1251-1265
    • Kemp, P.1    Gupta, M.2    Molineux, I.J.3
  • 25
    • 0014333701 scopus 로고
    • First-step-transfer deoxyribonucleic acid of bacteriophage T5
    • Lanni Y.T. First-step-transfer deoxyribonucleic acid of bacteriophage T5. Bacteriol. Rev. 32 2 (1968) 227-242
    • (1968) Bacteriol. Rev. , vol.32 , Issue.2 , pp. 227-242
    • Lanni, Y.T.1
  • 27
    • 0036719291 scopus 로고    scopus 로고
    • Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches
    • Lawrence J.G., Hatfull G.F., and Hendrix R.W. Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches. J. Bacteriol. 184 17 (2002) 4891-4905
    • (2002) J. Bacteriol. , vol.184 , Issue.17 , pp. 4891-4905
    • Lawrence, J.G.1    Hatfull, G.F.2    Hendrix, R.W.3
  • 29
    • 0029360727 scopus 로고
    • Efficient isolation and mapping of Arobidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR
    • Liu Y.G., Mitsukawa N., Oosumi T., and Whittier R.F. Efficient isolation and mapping of Arobidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J. 8 (1995) 457-463
    • (1995) Plant J. , vol.8 , pp. 457-463
    • Liu, Y.G.1    Mitsukawa, N.2    Oosumi, T.3    Whittier, R.F.4
  • 30
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for detection of transfer RNA genes in genomic sequence
    • Lowe T.M., and Eddy S.R. tRNAscan-SE: a program for detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25 (1997) 955-964
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 31
    • 0035403340 scopus 로고    scopus 로고
    • Distribution, isolation, host specificity, and diversity of cyanophages infecting marine Synechococcus spp. in river estuaries
    • Lu J., Chen F., and Hodson R.E. Distribution, isolation, host specificity, and diversity of cyanophages infecting marine Synechococcus spp. in river estuaries. Appl. Environ. Microbiol. 67 7 (2001) 3285-3290
    • (2001) Appl. Environ. Microbiol. , vol.67 , Issue.7 , pp. 3285-3290
    • Lu, J.1    Chen, F.2    Hodson, R.E.3
  • 32
    • 0037385295 scopus 로고    scopus 로고
    • Phages of the marine cyanobacterial picophytoplankton
    • Mann N.H. Phages of the marine cyanobacterial picophytoplankton. FEMS Microbiol. Rev. 27 1 (2003) 17-34
    • (2003) FEMS Microbiol. Rev. , vol.27 , Issue.1 , pp. 17-34
    • Mann, N.H.1
  • 33
  • 34
    • 0034044314 scopus 로고    scopus 로고
    • The PSIPRED protein structure prediction server
    • McGuffin L.J., Bryson K., and Jones D.T. The PSIPRED protein structure prediction server. Bioinformatics 16 (2002) 404-405
    • (2002) Bioinformatics , vol.16 , pp. 404-405
    • McGuffin, L.J.1    Bryson, K.2    Jones, D.T.3
  • 35
    • 1442300823 scopus 로고    scopus 로고
    • Peptidoglycan hydrolytic activities associated with bacteriophage virions
    • Moak M., and Molineux I.J. Peptidoglycan hydrolytic activities associated with bacteriophage virions. Mol. Microbiol. 51 4 (2004) 1169-1183
    • (2004) Mol. Microbiol. , vol.51 , Issue.4 , pp. 1169-1183
    • Moak, M.1    Molineux, I.J.2
  • 36
    • 0035043999 scopus 로고    scopus 로고
    • No syringes please, ejection of phage T7 DNA from the virion is enzyme driven
    • Molineux I.J. No syringes please, ejection of phage T7 DNA from the virion is enzyme driven. Mol. Microbiol. 40 (2001) 1-8
    • (2001) Mol. Microbiol. , vol.40 , pp. 1-8
    • Molineux, I.J.1
  • 37
    • 21844441735 scopus 로고    scopus 로고
    • The T7 group
    • Calender R. (Ed), Oxford Univ. Press, Oxford Chap. 20
    • Molineux I.J. The T7 group. In: Calender R. (Ed). The Bacteriophages (2005), Oxford Univ. Press, Oxford Chap. 20
    • (2005) The Bacteriophages
    • Molineux, I.J.1
  • 38
    • 29144471903 scopus 로고    scopus 로고
    • Fifty-three years since Hershey and Chase; much ado about pressure but which pressure is it?
    • Molineux I.J. Fifty-three years since Hershey and Chase; much ado about pressure but which pressure is it?. Virology 344 (2006) 221-229
    • (2006) Virology , vol.344 , pp. 221-229
    • Molineux, I.J.1
  • 39
    • 20444385133 scopus 로고    scopus 로고
    • Marine phage genomics: what have we learned?
    • Paul J.H., and Sullivan M.B. Marine phage genomics: what have we learned?. Curr. Opin. Biotechnol. 16 3 (2005) 299-307
    • (2005) Curr. Opin. Biotechnol. , vol.16 , Issue.3 , pp. 299-307
    • Paul, J.H.1    Sullivan, M.B.2
  • 40
    • 0018409915 scopus 로고
    • Generic assignments, strain histories and properties of pure cultures of cyanobacteria
    • Rippka R., Deruelles J., Waterbury J., Herdman M., and Stanier R. Generic assignments, strain histories and properties of pure cultures of cyanobacteria. J. Gen. Microbiol. 111 (1979) 1-61
    • (1979) J. Gen. Microbiol. , vol.111 , pp. 1-61
    • Rippka, R.1    Deruelles, J.2    Waterbury, J.3    Herdman, M.4    Stanier, R.5
  • 41
    • 0034111671 scopus 로고    scopus 로고
    • The complete genomic sequence of the marine phage roseophage SIO1 shares homology with nonmarine phages
    • Rohwer F., Segall A., Steward G., Seguritan V., Breitbart M., Wolven F., and Azam F. The complete genomic sequence of the marine phage roseophage SIO1 shares homology with nonmarine phages. Limnol. Oceanogr. 45 2 (2000) 408-418
    • (2000) Limnol. Oceanogr. , vol.45 , Issue.2 , pp. 408-418
    • Rohwer, F.1    Segall, A.2    Steward, G.3    Seguritan, V.4    Breitbart, M.5    Wolven, F.6    Azam, F.7
  • 42
    • 0001715546 scopus 로고
    • Algal virus: isolation
    • Safferman R.S., and Morris M.E. Algal virus: isolation. Science 140 (1963) 679-680
    • (1963) Science , vol.140 , pp. 679-680
    • Safferman, R.S.1    Morris, M.E.2
  • 45
    • 12244252269 scopus 로고    scopus 로고
    • Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments
    • Short C.M., and Suttle C.A. Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments. Appl. Environ. Microbiol. 71 1 (2005) 480-486
    • (2005) Appl. Environ. Microbiol. , vol.71 , Issue.1 , pp. 480-486
    • Short, C.M.1    Suttle, C.A.2
  • 47
    • 0001950328 scopus 로고
    • UTEX-the culture collection of algae at the university of Texas at Austin
    • (Suppl.)
    • Starr R.C., and Zeikus J.A. UTEX-the culture collection of algae at the university of Texas at Austin. J. Phycol. 23 (1987) 1-47 (Suppl.)
    • (1987) J. Phycol. , vol.23 , pp. 1-47
    • Starr, R.C.1    Zeikus, J.A.2
  • 48
    • 0041375471 scopus 로고    scopus 로고
    • Cyanophages infecting the oceanic cyanobacterium Prochlorococcus
    • Sullivan M.B., Waterbury J.B., and Chisholm S.W. Cyanophages infecting the oceanic cyanobacterium Prochlorococcus. Nature 424 6952 (2003) 1047-1051
    • (2003) Nature , vol.424 , Issue.6952 , pp. 1047-1051
    • Sullivan, M.B.1    Waterbury, J.B.2    Chisholm, S.W.3
  • 49
    • 21344461027 scopus 로고    scopus 로고
    • Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations
    • Sullivan M.B., Coleman M.L., Weigele P., Rohwer F., and Chisholm S.W. Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PLoS Biol. 3 5 (2005) e144
    • (2005) PLoS Biol. , vol.3 , Issue.5
    • Sullivan, M.B.1    Coleman, M.L.2    Weigele, P.3    Rohwer, F.4    Chisholm, S.W.5
  • 50
    • 0017864518 scopus 로고
    • Molecular genetics of bacteriophage P22
    • Susskind M., and Botstein D. Molecular genetics of bacteriophage P22. Microbiol. Rev. 42 (1978) 385-413
    • (1978) Microbiol. Rev. , vol.42 , pp. 385-413
    • Susskind, M.1    Botstein, D.2
  • 51
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 52
    • 0027376914 scopus 로고
    • Isolation and molecular characterization of five cyanophages propagated on Synechococcus sp. strain WH7803
    • Wilson W.H., Joint I.R., Carr N.G., and Mann N.H. Isolation and molecular characterization of five cyanophages propagated on Synechococcus sp. strain WH7803. Appl. Environ. Microbiol. 59 (1993) 3736-3742
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 3736-3742
    • Wilson, W.H.1    Joint, I.R.2    Carr, N.G.3    Mann, N.H.4
  • 53
    • 0034053843 scopus 로고    scopus 로고
    • Virioplankton: viruses in aquatic ecosystems
    • Wommack K.E., and Colwell R.R. Virioplankton: viruses in aquatic ecosystems. Mirobiol. Mol. Biol. Rev. 64 1 (2000) 69-114
    • (2000) Mirobiol. Mol. Biol. Rev. , vol.64 , Issue.1 , pp. 69-114
    • Wommack, K.E.1    Colwell, R.R.2
  • 54
  • 55
    • 0020480156 scopus 로고
    • RNA polymerase-dependent mechanism for the stepwise T7 phage DNA transport from the virion into E. coli
    • Zavriev S.K., and Shemyakin M.F. RNA polymerase-dependent mechanism for the stepwise T7 phage DNA transport from the virion into E. coli. Nucleic Acids Res. 10 (1982) 1635-1652
    • (1982) Nucleic Acids Res. , vol.10 , pp. 1635-1652
    • Zavriev, S.K.1    Shemyakin, M.F.2
  • 56
    • 0036211846 scopus 로고    scopus 로고
    • Phylogenetic diversity of marine cyanophage isolates and natural virus communities as revealed by sequences of viral capsid assembly protein gene g20
    • Zhong Y., Chen F., Wilhelm S.W., Poorvin L., and Hodson R.E. Phylogenetic diversity of marine cyanophage isolates and natural virus communities as revealed by sequences of viral capsid assembly protein gene g20. Appl. Environ. Microbiol. 68 (2002) 1576-1584
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1576-1584
    • Zhong, Y.1    Chen, F.2    Wilhelm, S.W.3    Poorvin, L.4    Hodson, R.E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.