-
1
-
-
77952441809
-
Comparison of DNA extraction kits for PCR-DGGE analysis of human intestinal microbial communities from fecal specimens
-
Ariefdjohan M.W., Savaiano D.A., Nakatsu C.H. Comparison of DNA extraction kits for PCR-DGGE analysis of human intestinal microbial communities from fecal specimens. Nutr. J. 2010, 9(1):23.
-
(2010)
Nutr. J.
, vol.9
, Issue.1
, pp. 23
-
-
Ariefdjohan, M.W.1
Savaiano, D.A.2
Nakatsu, C.H.3
-
2
-
-
84858709310
-
Freezing fecal samples prior to DNA extraction affects the Firmicutes to Bacteroidetes ratio determined by downstream quantitative PCR analysis
-
Bahl M.I., Bergström A., Licht T.R. Freezing fecal samples prior to DNA extraction affects the Firmicutes to Bacteroidetes ratio determined by downstream quantitative PCR analysis. FEMS Microbiol. Lett. 2012, 329(2):193-197.
-
(2012)
FEMS Microbiol. Lett.
, vol.329
, Issue.2
, pp. 193-197
-
-
Bahl, M.I.1
Bergström, A.2
Licht, T.R.3
-
3
-
-
77957892494
-
Evaluation of five methods for total DNA extraction from western corn rootworm beetles
-
Chen H., Rangasamy M., Tan S.Y., Wang H., Siegfried B.D. Evaluation of five methods for total DNA extraction from western corn rootworm beetles. PLoS One 2010, 5(8):e11963.
-
(2010)
PLoS One
, vol.5
, Issue.8
-
-
Chen, H.1
Rangasamy, M.2
Tan, S.Y.3
Wang, H.4
Siegfried, B.D.5
-
4
-
-
80052801968
-
Evaluation of stool microbiota signatures in two cohorts of Asian (Singapore and Indonesia) newborns at risk of atopy
-
Chin Y.G., Keong C.K., Pei-Ying H., Christophe L., Cahya S. Evaluation of stool microbiota signatures in two cohorts of Asian (Singapore and Indonesia) newborns at risk of atopy. BMC Microbiol. 2011, 11(1):193.
-
(2011)
BMC Microbiol.
, vol.11
, Issue.1
, pp. 193
-
-
Chin, Y.G.1
Keong, C.K.2
Pei-Ying, H.3
Christophe, L.4
Cahya, S.5
-
5
-
-
84866423583
-
The human gut microbiome: current knowledge, challenges, and future directions
-
Dave M., Higgins P.D., Middha S., Rioux K.P. The human gut microbiome: current knowledge, challenges, and future directions. Transl. Res. 2012, 160(4):246-257.
-
(2012)
Transl. Res.
, vol.160
, Issue.4
, pp. 246-257
-
-
Dave, M.1
Higgins, P.D.2
Middha, S.3
Rioux, K.P.4
-
6
-
-
84864754089
-
Role of the intestinal microbiome in health and disease: from correlation to causation
-
De Vos W.M., De Vos E.A.J. Role of the intestinal microbiome in health and disease: from correlation to causation. Nutr. Rev. 2012, 70(s1):S45-S56.
-
(2012)
Nutr. Rev.
, vol.70
, Issue.S1
-
-
De Vos, W.M.1
De Vos, E.A.J.2
-
7
-
-
77950813643
-
Role of the gut microbiota in defining human health
-
Fujimura K.E., Slusher N.A., Cabana M.D., Lynch S.V. Role of the gut microbiota in defining human health. Expert Rev. Anti Infect. Ther. 2010, 8(4):435-454.
-
(2010)
Expert Rev. Anti Infect. Ther.
, vol.8
, Issue.4
, pp. 435-454
-
-
Fujimura, K.E.1
Slusher, N.A.2
Cabana, M.D.3
Lynch, S.V.4
-
8
-
-
65549150087
-
Comparative assessment of human and farm animal faecal microbiota using real-time quantitative PCR
-
Furet J.P., Firmesse O., Gourmelon M., Bridonneau C., Tap J., Mondot S., Doré J., Corthier G. Comparative assessment of human and farm animal faecal microbiota using real-time quantitative PCR. FEMS Microbiol. Ecol. 2009, 68(3):351-362.
-
(2009)
FEMS Microbiol. Ecol.
, vol.68
, Issue.3
, pp. 351-362
-
-
Furet, J.P.1
Firmesse, O.2
Gourmelon, M.3
Bridonneau, C.4
Tap, J.5
Mondot, S.6
Doré, J.7
Corthier, G.8
-
9
-
-
23744480592
-
Statistical analyses of complex denaturing gradient gel electrophoresis profiles
-
Gafan G.P., Lucas V.S., Roberts G.J., Petrie A., Wilson M., Spratt D.A. Statistical analyses of complex denaturing gradient gel electrophoresis profiles. J. Clin. Microbiol. 2005, 43(8):3971-3978.
-
(2005)
J. Clin. Microbiol.
, vol.43
, Issue.8
, pp. 3971-3978
-
-
Gafan, G.P.1
Lucas, V.S.2
Roberts, G.J.3
Petrie, A.4
Wilson, M.5
Spratt, D.A.6
-
10
-
-
27644574002
-
Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism
-
Hayashi H., Takahashi R., Nishi T., Sakamoto M., Benno Y. Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism. J. Med. Microbiol. 2005, 54(Pt 11):1093-1101.
-
(2005)
J. Med. Microbiol.
, vol.54
, Issue.PART 11
, pp. 1093-1101
-
-
Hayashi, H.1
Takahashi, R.2
Nishi, T.3
Sakamoto, M.4
Benno, Y.5
-
11
-
-
0034462426
-
PCR detection of Escherichia coli O157: H7 directly from stools: evaluation of commercial extraction methods for purifying fecal DNA
-
Holland J., Louie L., Simor A., Louie M. PCR detection of Escherichia coli O157: H7 directly from stools: evaluation of commercial extraction methods for purifying fecal DNA. J. Clin. Microbiol. 2000, 38(11):4108-4113.
-
(2000)
J. Clin. Microbiol.
, vol.38
, Issue.11
, pp. 4108-4113
-
-
Holland, J.1
Louie, L.2
Simor, A.3
Louie, M.4
-
12
-
-
0001857117
-
16S/23S rRNA sequencing
-
John Wiley and Sons Ltd., Chichester, United Kingdom, E.R. Stackebrandt, M. Goodfellow (Eds.)
-
Lane D. 16S/23S rRNA sequencing. Nucleic Acid Techniques in Bacterial Systematics 1991, 115-175. John Wiley and Sons Ltd., Chichester, United Kingdom. E.R. Stackebrandt, M. Goodfellow (Eds.).
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.1
-
13
-
-
84872851206
-
Comparison of fecal DNA extraction kits for the detection of Mycobacterium avium subsp. paratuberculosis by polymerase chain reaction
-
Leite F.L., Stokes K.D., Robbe-Austerman S., Stabel J.R. Comparison of fecal DNA extraction kits for the detection of Mycobacterium avium subsp. paratuberculosis by polymerase chain reaction. J. Vet. Diagn. Invest. 2013, 25(1):27-34.
-
(2013)
J. Vet. Diagn. Invest.
, vol.25
, Issue.1
, pp. 27-34
-
-
Leite, F.L.1
Stokes, K.D.2
Robbe-Austerman, S.3
Stabel, J.R.4
-
14
-
-
0038066208
-
Evaluation of QIAamp® DNA Stool Mini Kit for ecological studies of gut microbiota
-
Li M., Gong J., Cottrill M., Yu H., de Lange C., Burton J., Topp E. Evaluation of QIAamp® DNA Stool Mini Kit for ecological studies of gut microbiota. J. Microbiol. Methods 2003, 54(1):13-20.
-
(2003)
J. Microbiol. Methods
, vol.54
, Issue.1
, pp. 13-20
-
-
Li, M.1
Gong, J.2
Cottrill, M.3
Yu, H.4
de Lange, C.5
Burton, J.6
Topp, E.7
-
15
-
-
84862197046
-
Analyses of the microbial diversity across the human microbiome
-
Li K., Bihan M., Yooseph S., Methé B.A. Analyses of the microbial diversity across the human microbiome. PLoS One 2012, 7(6):e32118.
-
(2012)
PLoS One
, vol.7
, Issue.6
-
-
Li, K.1
Bihan, M.2
Yooseph, S.3
Methé, B.A.4
-
16
-
-
84864020698
-
Diversity of faecal oxalate-degrading bacteria in black and white South African study groups: insights into understanding the rarity of urolithiasis in the black group
-
Magwira C.A., Kullin B., Lewandowski S., Rodgers A., Reid S.J., Abratt V.R. Diversity of faecal oxalate-degrading bacteria in black and white South African study groups: insights into understanding the rarity of urolithiasis in the black group. J. Appl. Microbiol. 2012, 113(2):418-428.
-
(2012)
J. Appl. Microbiol.
, vol.113
, Issue.2
, pp. 418-428
-
-
Magwira, C.A.1
Kullin, B.2
Lewandowski, S.3
Rodgers, A.4
Reid, S.J.5
Abratt, V.R.6
-
17
-
-
0037261792
-
Comparison of real-time PCR with SYBR Green I or 5'-nuclease assays and dot-blot hybridization with rDNA-targeted oligonucleotide probes in quantification of selected faecal bacteria
-
Malinen E., Kassinen A., Rinttilä T., Palva A. Comparison of real-time PCR with SYBR Green I or 5'-nuclease assays and dot-blot hybridization with rDNA-targeted oligonucleotide probes in quantification of selected faecal bacteria. Microbiology 2003, 149(1):269-277.
-
(2003)
Microbiology
, vol.149
, Issue.1
, pp. 269-277
-
-
Malinen, E.1
Kassinen, A.2
Rinttilä, T.3
Palva, A.4
-
18
-
-
84856061103
-
The currently used commercial DNA-extraction methods give different results of clostridial and actinobacterial populations derived from human fecal samples
-
Maukonen J., Simões C., Saarela M. The currently used commercial DNA-extraction methods give different results of clostridial and actinobacterial populations derived from human fecal samples. FEMS Microbiol. Ecol. 2012, 79(3):697-708.
-
(2012)
FEMS Microbiol. Ecol.
, vol.79
, Issue.3
, pp. 697-708
-
-
Maukonen, J.1
Simões, C.2
Saarela, M.3
-
19
-
-
84927510198
-
-
Available:, (29 March 2010-last update, 2012, October)
-
McInnes P., Cutting M. Manual of Procedures for Human Microbiome Project, Core Microbiome Sampling, Protocol A, HMP Protocol # 07-001, Version Number: 11.0 Available:, (29 March 2010-last update, 2012, October). http://hmpdacc.org/doc/sops_2/manual_of_procedures_v11.pdf.
-
Manual of Procedures for Human Microbiome Project, Core Microbiome Sampling, Protocol A, HMP Protocol # 07-001, Version Number: 11.0
-
-
McInnes, P.1
Cutting, M.2
-
20
-
-
0036242883
-
A comparison of five methods for extraction of bacterial DNA from human faecal samples
-
McOrist A.L., Jackson M., Bird A.R. A comparison of five methods for extraction of bacterial DNA from human faecal samples. J. Microbiol. Methods 2002, 50(2):131-139.
-
(2002)
J. Microbiol. Methods
, vol.50
, Issue.2
, pp. 131-139
-
-
McOrist, A.L.1
Jackson, M.2
Bird, A.R.3
-
21
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G., De Waal E.C., Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 1993, 59(3):695-700.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, Issue.3
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitterlinden, A.G.3
-
22
-
-
0036242855
-
Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria
-
Nicolaisen M.H., Ramsing N.B. Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria. J. Microbiol. Methods 2002, 50(2):189-203.
-
(2002)
J. Microbiol. Methods
, vol.50
, Issue.2
, pp. 189-203
-
-
Nicolaisen, M.H.1
Ramsing, N.B.2
-
23
-
-
34547129847
-
Development of the human infant intestinal microbiota
-
Palmer C., Bik E.M., DiGiulio D.B., Relman D.A., Brown P.O. Development of the human infant intestinal microbiota. PLoS Biol. 2007, 5(7):e177.
-
(2007)
PLoS Biol.
, vol.5
, Issue.7
-
-
Palmer, C.1
Bik, E.M.2
DiGiulio, D.B.3
Relman, D.A.4
Brown, P.O.5
-
24
-
-
35148856682
-
The role of the intestinal microbiota in the development of atopic disorders
-
Penders J., Stobberingh E.E., van den Brandt P.A., Thijs C. The role of the intestinal microbiota in the development of atopic disorders. Allergy 2007, 62(11):1223-1236.
-
(2007)
Allergy
, vol.62
, Issue.11
, pp. 1223-1236
-
-
Penders, J.1
Stobberingh, E.E.2
Van Den Brandt, P.A.3
Thijs, C.4
-
25
-
-
79951879778
-
Five commercial DNA extraction systems tested and compared on a stool sample collection
-
Persson S., de Boer R.F., Kooistra-Smid A.M., Olsen K.E. Five commercial DNA extraction systems tested and compared on a stool sample collection. Diagn. Microbiol. Infect. Dis. 2011, 69(3):240-244.
-
(2011)
Diagn. Microbiol. Infect. Dis.
, vol.69
, Issue.3
, pp. 240-244
-
-
Persson, S.1
de Boer, R.F.2
Kooistra-Smid, A.M.3
Olsen, K.E.4
-
26
-
-
0037239111
-
Application of terminal RFLP analysis to characterize oral bacterial flora in saliva of healthy subjects and patients with periodontitis
-
Sakamoto M., Takeuchi Y., Umeda M., Ishikawa I., Benno Y. Application of terminal RFLP analysis to characterize oral bacterial flora in saliva of healthy subjects and patients with periodontitis. J. Med. Microbiol. 2003, 52(1):79-89.
-
(2003)
J. Med. Microbiol.
, vol.52
, Issue.1
, pp. 79-89
-
-
Sakamoto, M.1
Takeuchi, Y.2
Umeda, M.3
Ishikawa, I.4
Benno, Y.5
-
27
-
-
50249150207
-
Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities
-
Schütte U.M.E., Abdo Z., Bent S.J., Shyu C., Williams C.J., Pierson J.D., Forney L.J. Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities. Appl. Microbiol. Biotechnol. 2008, 80(3):365-380.
-
(2008)
Appl. Microbiol. Biotechnol.
, vol.80
, Issue.3
, pp. 365-380
-
-
Schütte, U.M.E.1
Abdo, Z.2
Bent, S.J.3
Shyu, C.4
Williams, C.J.5
Pierson, J.D.6
Forney, L.J.7
-
28
-
-
33846288887
-
Comparison of DNA extraction methods for analysis of turkey cecal microbiota
-
Scupham A.J., Jones J.A., Wesley I.V. Comparison of DNA extraction methods for analysis of turkey cecal microbiota. Journal of applied microbiology 2007, 102(2):401-409.
-
(2007)
Journal of applied microbiology
, vol.102
, Issue.2
, pp. 401-409
-
-
Scupham, A.J.1
Jones, J.A.2
Wesley, I.V.3
-
29
-
-
79955812835
-
Optimising bacterial DNA extraction from faecal samples: comparison of three methods
-
Smith B., Li N., Andersen A.S., Slotved H.C., Krogfelt K.A. Optimising bacterial DNA extraction from faecal samples: comparison of three methods. Open Microbiol. J. 2011, 5:14-17.
-
(2011)
Open Microbiol. J.
, vol.5
, pp. 14-17
-
-
Smith, B.1
Li, N.2
Andersen, A.S.3
Slotved, H.C.4
Krogfelt, K.A.5
-
30
-
-
55449112444
-
Evaluation of four DNA extraction methods for the detection of Tritrichomonas foetus in feline stool specimens by polymerase chain reaction
-
Stauffer S.H., Birkenheuer A.J., Levy M.G., Marr H., Gookin J.L. Evaluation of four DNA extraction methods for the detection of Tritrichomonas foetus in feline stool specimens by polymerase chain reaction. J. Vet. Diagn. Investig. 2008, 20(5):639-641.
-
(2008)
J. Vet. Diagn. Investig.
, vol.20
, Issue.5
, pp. 639-641
-
-
Stauffer, S.H.1
Birkenheuer, A.J.2
Levy, M.G.3
Marr, H.4
Gookin, J.L.5
-
31
-
-
5444258505
-
Application of molecular fingerprinting for qualitative assessment of small-intestinal bacterial diversity in dogs
-
Suchodolski J.S., Ruaux C.G., Steiner J.M., Fetz K., Williams D.A. Application of molecular fingerprinting for qualitative assessment of small-intestinal bacterial diversity in dogs. J. Clin. Microbiol. 2004, 42(10):4702-4708.
-
(2004)
J. Clin. Microbiol.
, vol.42
, Issue.10
, pp. 4702-4708
-
-
Suchodolski, J.S.1
Ruaux, C.G.2
Steiner, J.M.3
Fetz, K.4
Williams, D.A.5
-
32
-
-
0033760479
-
Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5'-nuclease assays
-
Suzuki M.T., Taylor L.T., DeLong E.F. Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5'-nuclease assays. Appl. Environ. Microbiol. 2000, 66(11):4605-4614.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, Issue.11
, pp. 4605-4614
-
-
Suzuki, M.T.1
Taylor, L.T.2
DeLong, E.F.3
-
33
-
-
79953756883
-
Denaturing gradient gel electrophoresis of neonatal intestinal microbiota in relation to the development of asthma
-
Vael C., Vanheirstraeten L., Desager K.N., Goossens H. Denaturing gradient gel electrophoresis of neonatal intestinal microbiota in relation to the development of asthma. BMC Microbiol. 2011, 11(1):68.
-
(2011)
BMC Microbiol.
, vol.11
, Issue.1
, pp. 68
-
-
Vael, C.1
Vanheirstraeten, L.2
Desager, K.N.3
Goossens, H.4
-
34
-
-
2442616728
-
Temporal stability analysis of the microbiota in human feces by denaturing gradient gel electrophoresis using universal and group-specific 16S rRNA gene primers
-
Vanhoutte T., Huys G., De Brandt E., Swings J. Temporal stability analysis of the microbiota in human feces by denaturing gradient gel electrophoresis using universal and group-specific 16S rRNA gene primers. FEMS Microbiol. Ecol. 2004, 48(3):437-446.
-
(2004)
FEMS Microbiol. Ecol.
, vol.48
, Issue.3
, pp. 437-446
-
-
Vanhoutte, T.1
Huys, G.2
De Brandt, E.3
Swings, J.4
-
35
-
-
0030748867
-
Inhibition and facilitation of nucleic acid amplification
-
Wilson I.G. Inhibition and facilitation of nucleic acid amplification. Appl. Environ. Microbiol. 1997, 63(10):3741-3751.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, Issue.10
, pp. 3741-3751
-
-
Wilson, I.G.1
-
36
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
Yatsunenko T., Rey F.E., Manary M.J., Trehan I., Dominguez-Bello M.G., Contreras M., Magris M., Hidalgo G., Baldassano R.N., Anokhin A.P., Heath A.C., Warner B., Reeder J., Kuczynski J., Caporaso J.G., Lozupone C.A., Lauber C., Clemente J.C., Knights D., Knight R., Gordon J.I. Human gut microbiome viewed across age and geography. Nature 2012, 486(7402):222-227.
-
(2012)
Nature
, vol.486
, Issue.7402
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
Contreras, M.6
Magris, M.7
Hidalgo, G.8
Baldassano, R.N.9
Anokhin, A.P.10
Heath, A.C.11
Warner, B.12
Reeder, J.13
Kuczynski, J.14
Caporaso, J.G.15
Lozupone, C.A.16
Lauber, C.17
Clemente, J.C.18
Knights, D.19
Knight, R.20
Gordon, J.I.21
more..
-
37
-
-
84858763397
-
Evaluation of methods for the extraction and purification of DNA from the human microbiome
-
Yuan S., Cohen D.B., Ravel J., Abdo Z., Forney L.J. Evaluation of methods for the extraction and purification of DNA from the human microbiome. PLoS One 2012, 7(3):e33865.
-
(2012)
PLoS One
, vol.7
, Issue.3
-
-
Yuan, S.1
Cohen, D.B.2
Ravel, J.3
Abdo, Z.4
Forney, L.J.5
-
38
-
-
0031684010
-
Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria
-
Zoetendal E.G., Akkermans A.D.L., De Vos W.M. Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria. Appl. Environ. Microbiol. 1998, 64(10):3854-3859.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, Issue.10
, pp. 3854-3859
-
-
Zoetendal, E.G.1
Akkermans, A.D.L.2
De Vos, W.M.3
|