Evaluation of five methods for total DNA extraction from western corn rootworm beetles

PLoS ONE

Volumn 5, Issue 8, 2010, Pages

  Chen, Hong ^a   Rangasamy, Murugesan ^a   Tan, Sek Yee ^a   Wang, Haichuan ^a   Siegfried, Blair D ^a  

^a UNIVERSITY OF NEBRASKA LINCOLN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AGAROSE; CETRIMIDE; DODECYL SULFATE SODIUM; GENOMIC DNA; ALCOHOL; DNA; MICROSATELLITE DNA;

ANALYTICAL EQUIPMENT; ARTICLE; BEETLE; CONTROLLED STUDY; COST; DIABROTICA VIRGIFERA; DNA DEGRADATION; DNA EXTRACTION; EVALUATION RESEARCH; FEMALE; GENE AMPLIFICATION; GENE LOCATION; INTERMETHOD COMPARISON; MALE; MICROSATELLITE MARKER; NONHUMAN; POLYMERASE CHAIN REACTION; QUALITATIVE RESEARCH; QUANTITATIVE ANALYSIS; REACTION TIME; SOLVENT EXTRACTION; ANIMAL; BODY WEIGHT; CHEMISTRY; COLOR; ELECTROPHORESIS; EVALUATION; FRACTIONATION; GENETICS; GENOME; ISOLATION AND PURIFICATION; METHODOLOGY; PRECIPITATION; QUALITY CONTROL; TEMPERATURE; TIME;

COLEOPTERA; DIABROTICA VIRGIFERA VIRGIFERA; HEXAPODA;

ANIMALS; BEETLES; BODY WEIGHT; CHEMICAL FRACTIONATION; CHEMICAL PRECIPITATION; COLOR; DNA; ELECTROPHORESIS; ETHANOL; FEMALE; GENOME, INSECT; MALE; MICROSATELLITE REPEATS; POLYMERASE CHAIN REACTION; QUALITY CONTROL; TEMPERATURE; TIME FACTORS;

EID: 77957892494     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0011963     Document Type: Article

References (33)

1. nd Edition. Oxford, New York, Tokyo: Oxford University Press. pp 29-64.
2. Waldschmidt AM (1997) Extraction of genomic DNA from Melipona quadrifasciata (Hymenoptera: Apidae, Meliponinae). Braz J Genet 20: 421- 423.
3. Chen M, Zhu Y, Tao J, Luo Y (2008) Methodological comparison of DNA extraction from Holcocerrus hippophaecolus (Lepidoptera: Cossidae) for AFLP analysis. For Study China 10: 189-192.
4. Chomczynski P, Mackey K, Drews R, Wilfinger W (1997) DNAzol: A reagent for the rapid isolation of genomic DNA. BioTechniques 22: 550- 553.
5. Chomczynski P, Wilfinger W, Mackey K (1998) Isolation of Genomic DNA from Human, Animal, and Plant Samples with DNAzol Reagents. Biotechnol Int. pp 185-188.
6. Gentra Systems (2004) PuregeneH genetic DNA purification kit instructions.
7. Quagen (2006) DNeasyH Blood and Tissue Handbook.
8. Coen ES, Thoday JM, Dover G (1982) Rate of turnover of structural variants in the rDNA gene family of Drosophila melanogaster. Nature 295: 564-568.
9. Boyce TM, Zwick ME, Aquardo CF (1990) Mitochondrial DNA in the pine weevil: size, structure and heteroplasmy. Genetics 123: 825-836.
10. Sheppard WS, McPheron BA (1991) Ribosomal DNA diversity in Apidae. In: Smith DR, ed. Diversity in the Genus Apis. Boulder, San Francisco, oxford: Westview Press. pp 89-102.
11. Hunt GJ, Page RE (1992) Patterns of inheritance with RAPD molecular markers reveal novel types of polymorphism in the honey bee. Theor Appl Genet 85: 15-20.
12. Shahjahan RM, Hughes KJ, Leopold RA, DeVault JD (1995) Lower incubation temperature increases yield of insect genomic DNA isolated by the CTAB method. BioTechniques 19: 333-334.
13. Aljanabi S, Martinez I (1997) Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Res 25: 4692-4693.
14. Clark TL, Meinke LJ, Foster JF (2001) Molecular phylogeny of Diabrotica beetles (Coleoptera: Chrysomelidae) inferred from analysis of combined mitochondrial and nuclear DNA sequences. Insect Mol Biol 10: 303-314.
15. Linton Y, Harbach RE, Seng CM, Anthony TG, Matusop A (2001) Morphological and molecular identity of Anopheles (Cellia) sundaicus (Diptera: Culicidae), the nominotypical member of a malaria vector species complex in Southeast Asia. Sys Entomol 26: 357-366.
16. nd Edition. San Diego, CA: Academic Press.
17. Molecular Research Center (2008) DNAzolH genomic DNA isolation reagent.
18. Gilbert MTP, Moore W, Melchior L, Worobey M (2007) DNA Extraction from Dry Museum Beetles without Conferring External Morphological Damage. PLoS ONE 2: e272. doi:10.1371/journal.pone.0000272.
19. Zeugin JA, Hartley JL (1985) Ethanol Precipitation of DNA. Focus 7: 1-2.
20. Crouse J, Amorese D (1987) Ethanol Precipitation: Ammonium Acetate as an Alternative to Sodium Acetate. Focus 9: 3-5.
21. Miller NJ, Guillemaud T, Giordano R, Siegfried BD, Gray ME, et al. (2009) Genes, gene flow and adaptation of Diabrotica virgifera virgifera. Agric For Entomol 11: 47-60.
22. Steiner JJ, Poklemba CJ, Fjellstrom RG, Elliott LF (1995) A rapid one-tube genomic DNA extraction process for PCR and RAPD analyses. Nucleic Acids Res 23: 2569-2570.
23. Miller NJ, Richards S, Sappington TW (2009) The prospects for sequencing the western corn rootworm genome. J Appl Entomol 134: 420-428.
24. Illumina (2010) www.illumina.com.
25. SOLiD Systems (2010) www.appliedbiosystems.com.
26. 454 Life Sciences (2010) www.454.com.
27. Roehrdanz RL, Levine E (2007) Wolbachia bacterial infections linked to mitochondrial DNA reproductive isolation among populations of northern corn rootworm (Coleoptera: Chrysomelidae). Ann Entomol Soc Am 100: 522-531.
28. Hammond JBW, Spanswick G, Mawn JA (1996) Extraction of DNA from preserved animal specimens for use in randomly amplified polymorphic DNA analysis. Anal Biochem 240: 298-300.
29. rd Edition. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
30. Phillips AJ, Simon C (1995) Simple, Efficient, and Nondestructive DNA Extraction Protocol for Arthropods. Ann Entomol Soc Am 88: 281-283.
31. Rohland N, Siedel H, Hofreiter M (2004) Nondestructive DNA extraction method for mitochondrial DNA analyses of museum specimens. BioTechniques 36: 814-821.
32. Kim KS, Stolz U, Miller N, Waits ER, Guillemaud T, et al. (2008) A core set of microsatellite markers for western corn rootworm (Coleoptera: Chrysomelidae) population genetics studies. Environ Entomol 37: 292-300.
33. Minitab (2005) MINITABH Release 14.20. Minitab, Inc, State College, PA. www.minitab.com.