Transcriptional oscillation of canonical clock genes in mouse peripheral tissues

BMC Molecular Biology

Volumn 5, Issue , 2004, Pages

  Yamamoto, Takuro ^a,b,c   Nakahata, Yasukazu ^a,b   Soma, Haruhiko ^a,b   Akashi, Makoto ^a   Mamine, Takayoshi ^b   Takumi, Toru ^a,c  

^a OSAKA BIOSCIENCE INSTITUTE   (Japan)

^b SONY CORPORATION   (Japan)

^c OSAKA CITY UNIVERSITY GRADUATE SCHOOL OF MEDICINE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; TRANSCRIPTION FACTOR CLOCK; ARNTL PROTEIN, HUMAN; ARNTL PROTEIN, MOUSE; BASIC HELIX LOOP HELIX TRANSCRIPTION FACTOR; CELL CYCLE PROTEIN; CELL RECEPTOR; CIRCADIAN RHYTHM SIGNALING PROTEIN; DBP PROTEIN, MOUSE; DBP PROTEIN, RAT; DNA BINDING PROTEIN; NERVE PROTEIN; NPAS2 PROTEIN, MOUSE; NR1D1 PROTEIN, MOUSE; NUCLEAR PROTEIN; NUCLEAR RECEPTOR NR1D1; PER1 PROTEIN, HUMAN; PER1 PROTEIN, MOUSE; PER1 PROTEIN, RAT; PER2 PROTEIN, HUMAN; PER2 PROTEIN, MOUSE; PER2 PROTEIN, RAT; PER3 PROTEIN, HUMAN; PER3 PROTEIN, MOUSE; PER3 PROTEIN, RAT; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR ARNTL;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BIOINFORMATICS; CIRCADIAN RHYTHM; GENE EXPRESSION; GENE SEQUENCE; GENETIC TRANSCRIPTION; MALE; MOLECULAR CLOCK; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; OSCILLATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TRANSCRIPTION REGULATION; ANIMAL; ANTIBODY SPECIFICITY; BAGG ALBINO MOUSE; BIOLOGY; CELL LINE; CELL STRAIN 3T3; CHEMISTRY; ENHANCER REGION; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; METHODOLOGY; MOLECULAR GENETICS;

MAMMALIA; PROKARYOTA;

ANIMALS; ARNTL TRANSCRIPTION FACTORS; BASE SEQUENCE; BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTORS; CELL CYCLE PROTEINS; CELL LINE; CIRCADIAN RHYTHM; COMPUTATIONAL BIOLOGY; DNA-BINDING PROTEINS; ENHANCER ELEMENTS, GENETIC; GENE EXPRESSION REGULATION; MALE; MICE; MICE, INBRED BALB C; MOLECULAR SEQUENCE DATA; NERVE TISSUE PROTEINS; NIH 3T3 CELLS; NUCLEAR PROTEINS; NUCLEAR RECEPTOR SUBFAMILY 1, GROUP D, MEMBER 1; ORGAN SPECIFICITY; PERIOD CIRCADIAN PROTEINS; RECEPTORS, CYTOPLASMIC AND NUCLEAR; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 26444526305     PISSN: 14712199     EISSN: 14712199     Source Type: Journal    
DOI: 10.1186/1471-2199-5-18     Document Type: Article

References (38)

1. Yoo SH, Yamazaki S, Lowrey PL, Shimomura K, Ko CH, Buhr ED, Siepka SM, Hong HK, Oh WJ, Yoo OJ, Menaker M, Takahashi JS: PERIOD2::LUCIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues. Proc Natl Acad Sci U S A 2004, 101:5339-5346.
2. Reppert SM, Weaver DR: Coordination of circadian timing in mammals. Nature 2002, 418:935-941.
3. Schibler U, Sassone-Corsi P: A web of circadian pacemakers. Cell 2002, 111:919-922.
4. Roenneberg T, Merrow M: The network of time: understanding the molecular circadian system. Curr Biol 2003, 13:R198-207.
5. Fu L, Lee CC: The circadian clock: pacemaker and tumour suppressor. Nat Rev Cancer 2003, 3:350-361.
6. Hastings MH, Reddy AB, Maywood ES: A clockwork web: circadian timing in brain and periphery, in health and disease. Nat Rev Neurosci 2003, 4:649-661.
7. Dunlap JC: Molecular bases for circadian clocks. Cell 1999, 96:271-290.
8. Young MW, Kay SA: Time zones: a comparative genetics of circadian clocks. Nat Rev Genet 2001, 2:702-715.
9. Allada R, Emery P, Takahashi JS, Rosbash M: Stopping time: the genetics of fly and mouse circadian clocks. Annu Rev Neurosci 2001, 24:1091-1119.
10. Albrecht U, Eichele G: The mammalian circadian clock. Curr Opin Genet Dev 2003, 13:271-277.
11. Konopka RJ, Benzer S: Clock mutants of Drosophila melanogaster. Proc Natl Acad Sci U S A 1971, 68:2112-2116.
12. Toh KL, Jones CR, He Y, Eide EJ, Hinz WA, Virshup DM, Ptacek LJ, Fu YH: An hPer2 phosphorylation site mutation in familial advanced sleep phase syndrome. Science 2001, 291:1040-1043.
13. Panda S, Antoch MP, Miller BH, Su AI, Schook AB, Straume M, Schultz PG, Kay SA, Takahashi JS, Hogenesch JB: Coordinated transcription of key pathways in the mouse by the circadian clock. Cell 2002, 109:307-320.
14. Storch KF, Lipan O, Leykin I, Viswanathan N, Davis FC, Wong WH, Weitz CJ: Extensive and divergent circadian gene expression in liver and heart. Nature 2002, 417:78-83.
15. Honma S, Ikeda M, Abe H, Tanahashi Y, Namihira M, Honma K, Nomura M: Circadian oscillation of BMAL1, a partner of a mammalian clock gene Clock, in rat suprachiasmatic nucleus. Biochem Biophys Res Commun 1998, 250:83-87.
16. Preitner N, Damiola F, Lopez-Molina L, Zakany J, Duboule D, Albrecht U, Schibler U: The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator. Cell 2002, 110:251-260.
17. Takumi T, Matsubara C, Shigeyoshi Y, Taguchi K, Yagita K, Maebayashi Y, Sakakida Y, Okumura K, Takashima N, Okamura H: A new mammalian period gene predominantly expressed in the suprachiasmatic nucleus. Genes Cells 1998, 3:167-176.
18. Takumi T, Taguchi K, Miyake S, Sakakida Y, Takashima N, Matsubara C, Maebayashi Y, Okumura K, Takekida S, Yamamoto S, Yagita K, Yan L, Young MW, Okamura H: A light-independent oscillatory gene mPer3 in mouse SCN and OVLT. Embo J 1998, 17:4753-4759.
19. Lopez-Molina L, Conquet F, Dubois-Dauphin M, Schibler U: The DBP gene is expressed according to a circadian rhythm in the suprachiasmatic nucleus and influences circadian behavior. Embo J 1997, 16:6762-6771.
20. Zylka MJ, Shearman LP, Weaver DR, Reppert SM: Three period homologs in mammals: differential light responses in the suprachiasmatic circadian clock and oscillating transcripts outside of brain. Neuron 1998, 20:1103-1110.
21. Bittman EL, Doherty L, Huang L, Paroskie A: Period gene expression in mouse endocrine tissues. Am J Physiol Regul Integr Comp Physiol 2003, 285:R561-569.
22. Alvarez JD, Chen D, Storer E, Sehgal A: Non-cyclic and developmental stage-specific expression of circadian clock proteins during murine spermatogenesis. Biol Reprod 2003, 69:81-91.
23. Morse D, Cermakian N, Brancorsini S, Parvinen M, Sassone-Corsi P: No circadian rhythms in testis: Period1 expression is clock independent and developmentally regulated in the mouse. Mol Endocrinol 2003, 17:141-151.
24. Takumi T, Nagamine Y, Miyake S, Matsubara C, Taguchi K, Takekida S, Sakakida Y, Nishikawa K, Kishimoto T, Niwa S, Okumura K, Okamura H: A mammalian ortholog of Drosophila timeless, highly expressed in SCN and retina, forms a complex with mPER1. Genes Cells 1999, 4:67-75.
25. Sangoram AM, Saez L, Antoch MP, Gekakis N, Staknis D, Whiteley A, Fruechte EM, Vitaterna MH, Shimomura K, King DP, Young MW, Weitz CJ, Takahashi JS: Mammalian circadian autoregulatory loop: a timeless ortholog and mPer1 interact and negatively regulate CLOCK-BMAL1-induced transcription. Neuron 1998, 21:1101-1113.
26. Zylka MJ, Shearman LP, Levine JD, Jin X, Weaver DR, Reppert SM: Molecular analysis of mammalian timeless. Neuron 1998, 21:1115-1122.
27. Barnes JW, Tischkau SA, Barnes JA, Mitchell JW, Burgoon PW, Hickok JR, Gillette MU: Requirement of mammalian Timeless for circadian rhythmicity. Science 2003, 302:439-442.
28. Gotter AL, Manganaro T, Weaver DR, Kolakowski LF Jr, Possidente B, Sriram S, MacLaughlin DT, Reppert SM: A time-less function for mouse timeless. Nat Neurosci 2000, 3:755-756.
29. Gekakis N, Staknis D, Nguyen HB, Davis FC, Wilsbacher LD, King DP, Takahashi JS, Weitz CJ: Role of the CLOCK protein in the mammalian circadian mechanism. Science 1998, 280:1564-1569.
30. Vielhaber E, Eide E, Rivers A, Gao ZH, Virshup DM: Nuclear entry of the circadian regulator mPER1 is controlled by mammalian casein kinase I epsilon. Mol Cell Biol 2000, 20:4888-4899.
31. Kume K, Zylka MJ, Sriram S, Shearman LP, Weaver DR, Jin X, Maywood ES, Hastings MH, Reppert SM: mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop. Cell 1999, 98:193-205.
32. Jin X, Shearman LP, Weaver DR, Zylka MJ, de Vries GJ, Reppert SM: A molecular mechanism regulating rhythmic output from the suprachiasmatic circadian clock. Cell 1999, 96:57-68.
33. Shearman LP, Sriram S, Weaver DR, Maywood ES, Chaves I, Zheng B, Kume K, Lee CC, van der Horst GT, Hastings MH, Reppert SM: Interacting molecular loops in the mammalian circadian clock. Science 2000, 288:1013-1019.
34. Yu W, Nomura M, Ikeda M: Interactivating feedback loops within the mammalian clock: BMAL1 is negatively autoregulated and upregulated by CRY1, CRY2, and PER2. Biochem Biophys Res Commun 2002, 290:933-941.
35. Nakajima Y, Ikeda M, Kimura T, Honma S, Ohmiya Y, Honma K: Bidirectional role of orphan nuclear receptor RORalpha in clock gene transcriptions demonstrated by a novel reporter assay system. FEBS Lett 2004, 565:122-126.
36. Hida A, Koike N, Hirose M, Hattori M, Sakaki Y, Tei H: The human and mouse Period1 genes: five well-conserved E-boxes additively contribute to the enhancement of mPer1 transcription. Genomics 2000, 65:224-233.
37. Ripperger JA, Shearman LP, Reppert SM, Schibler U: CLOCK, an essential pacemaker component, controls expression of the circadian transcription factor DBP. Genes Dev 2000, 14:679-689.
38. Ueda HR, Chen W, Adachi A, Wakamatsu H, Hayashi S, Takasugi T, Nagano M, Nakahama K, Suzuki Y, Sugano S, Iino M, Shigeyoshi Y, Hashimoto S: A transcription factor response element for gene expression during circadian night. Nature 2002, 418:534-539.