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Volumn 23, Issue 6, 2013, Pages 988-997

CG methylated microarrays identify a novel methylated sequence bound by the CEBPB|ATF4 heterodimer that is active in vivo

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATING TRANSCRIPTION FACTOR 4; CEBPD PROTEIN; CEBPG PROTEIN; CYCLIC AMP RESPONSIVE ELEMENT BINDING PROTEIN; CYCLIC AMP RESPONSIVE ELEMENT BINDING PROTEIN A; CYCLIC AMP RESPONSIVE ELEMENT BINDING PROTEIN BINDING PROTEIN; HETERODIMER; PROTEIN; PROTEIN C JUN; THAPSIGARGIN; TRANSCRIPTION FACTOR JUND; UNCLASSIFIED DRUG;

EID: 84878716506     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.146654.112     Document Type: Article
Times cited : (100)

References (47)
  • 1
    • 34447121352 scopus 로고    scopus 로고
    • Role of the transcription factor ATF4 in the anabolic actions of insulin and the anti-anabolic actions of glucocorticoids
    • DOI 10.1074/jbc.M610510200
    • Adams CM. 2007. Role of the transcription factor ATF4 in the anabolic actions of insulin and the anti-anabolic actions of glucocorticoids. J Biol Chem 282: 16744-16753. (Pubitemid 47093239)
    • (2007) Journal of Biological Chemistry , vol.282 , Issue.23 , pp. 16744-16753
    • Adams, C.M.1
  • 2
    • 0032533216 scopus 로고    scopus 로고
    • Soluble human endothelin-converting enzyme-1: Expression, purification, and demonstration of pronounced pH sensitivity
    • DOI 10.1006/abbi.1998.0913
    • Ahn K, Herman SB, Fahnoe DC. 1998. Soluble human endothelinconverting enzyme-1: Expression, purification, and demonstration of pronounced pH sensitivity. Arch Biochem Biophys 359: 258-268. (Pubitemid 28525241)
    • (1998) Archives of Biochemistry and Biophysics , vol.359 , Issue.2 , pp. 258-268
    • Ahn, K.1    Herman, S.B.2    Fahnoe, D.C.3
  • 5
    • 0028321474 scopus 로고
    • Different binding specificities and transactivation of variant CRE's by CREB complexes
    • Benbrook DM, Jones NC. 1994. Different binding specificities and transactivation of variant CRE's by CREB complexes. Nucleic Acids Res 22: 1463-1469. (Pubitemid 24166848)
    • (1994) Nucleic Acids Research , vol.22 , Issue.8 , pp. 1463-1469
    • Benbrook, D.M.1    Jones, N.C.2
  • 6
    • 33749061959 scopus 로고    scopus 로고
    • Protein binding microarrays (PBMs) for rapid, high-throughput characterization of the sequence specificities of DNA binding proteins
    • Berger MF, Bulyk ML. 2006. Protein binding microarrays (PBMs) for rapid, high-throughput characterization of the sequence specificities of DNA binding proteins. Methods Mol Biol 338: 245-260.
    • (2006) Methods Mol Biol , vol.338 , pp. 245-260
    • Berger, M.F.1    Bulyk, M.L.2
  • 7
    • 33750882505 scopus 로고    scopus 로고
    • Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities
    • DOI 10.1038/nbt1246, PII NBT1246
    • Berger MF, Philippakis AA, Qureshi AM, He FS, Estep PWIII, Bulyk ML. 2006. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nat Biotechnol 24: 1429-1435. (Pubitemid 44722107)
    • (2006) Nature Biotechnology , vol.24 , Issue.11 , pp. 1429-1435
    • Berger, M.F.1    Philippakis, A.A.2    Qureshi, A.M.3    He, F.S.4    Estep III, P.W.5    Bulyk, M.L.6
  • 10
    • 0022540321 scopus 로고
    • CpG-rich islands and the function of DNA methylation
    • Bird AP. 1986. CpG-rich islands and the function of DNA methylation. Nature 321: 209-213. (Pubitemid 16016411)
    • (1986) Nature , vol.321 , Issue.6067 , pp. 209-213
    • Bird, A.P.1
  • 11
    • 0033028741 scopus 로고    scopus 로고
    • Quantifying DNA-protein interactions by double-stranded DNA arrays
    • DOI 10.1038/9878
    • Bulyk ML, Gentalen E, Lockhart DJ, Church GM. 1999. Quantifying DNAprotein interactions by double-stranded DNA arrays. Nat Biotechnol 17: 573-577. (Pubitemid 29262921)
    • (1999) Nature Biotechnology , vol.17 , Issue.6 , pp. 573-577
    • Bulyk, M.L.1    Gentalen, E.2    Lockhart, D.J.3    Church, G.M.4
  • 12
    • 84861839326 scopus 로고    scopus 로고
    • CpG methylation recruits sequence specific transcription factors essential for tissue specific gene expression
    • Chatterjee R, Vinson C. 2012. CpG methylation recruits sequence specific transcription factors essential for tissue specific gene expression. Biochim Biophys Acta 1819: 763-770.
    • (2012) Biochim Biophys Acta , vol.1819 , pp. 763-770
    • Chatterjee, R.1    Vinson, C.2
  • 16
    • 0020637982 scopus 로고
    • Is hypomethylation linked to activation of δ-crystallin genes during lens development?
    • Grainger RM, Hazard-Leonards RM, Samaha F, Hougan LM, Lesk MR, Thomsen GH. 1983. Is hypomethylation linked to activation of d-crystallin genes during lens development? Nature 306: 88-91. (Pubitemid 13022778)
    • (1983) Nature , vol.306 , Issue.5938 , pp. 88-91
    • Grainger, R.M.1    Hazard Leonards, R.M.2    Samaha, F.3
  • 19
    • 0024673303 scopus 로고
    • CpG methylation of the cAMPresponsive enhancer/promoter sequence TGACGTCA abolishes specific factor binding as well as transcriptional activation
    • Iguchi-Ariga SM, Schaffner W. 1989. CpG methylation of the cAMPresponsive enhancer/promoter sequence TGACGTCA abolishes specific factor binding as well as transcriptional activation. Genes Dev 3: 612-619.
    • (1989) Genes Dev , vol.3 , pp. 612-619
    • Iguchi-Ariga, S.M.1    Schaffner, W.2
  • 21
    • 0027432554 scopus 로고
    • Identification of C/EBP basic region residues involved in DNA sequence recognition and half-site spacing preference
    • Johnson PF. 1993. Identification of C/EBP basic region residues involved in DNA sequence recognition and half-site spacing preference. Mol Cell Biol 13: 6919-6930. (Pubitemid 23321145)
    • (1993) Molecular and Cellular Biology , vol.13 , Issue.11 , pp. 6919-6930
    • Johnson, P.F.1
  • 22
    • 33847065486 scopus 로고    scopus 로고
    • The epigenomics of cancer
    • DOI 10.1016/j.cell.2007.01.029, PII S0092867407001274
    • Jones PA, Baylin SB. 2007. The epigenomics of cancer. Cell 128: 683-692. (Pubitemid 46273572)
    • (2007) Cell , vol.128 , Issue.4 , pp. 683-692
    • Jones, P.A.1    Baylin, S.B.2
  • 23
    • 0034284437 scopus 로고    scopus 로고
    • Repbase Update: A database and an electronic journal of repetitive elements
    • DOI 10.1016/S0168-9525(00)02093-X, PII S016895250002093X
    • Jurka J. 2000. Repbase update: A database and an electronic journal of repetitive elements. Trends Genet 16: 418-420. (Pubitemid 30665376)
    • (2000) Trends in Genetics , vol.16 , Issue.9 , pp. 418-420
    • Jurka, J.1
  • 24
    • 79959459272 scopus 로고    scopus 로고
    • Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays
    • Lam KN, van Bakel H, Cote AG, van der Ven A, Hughes TR. 2011. Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays. Nucleic Acids Res 39: 4680-4690.
    • (2011) Nucleic Acids Res , vol.39 , pp. 4680-4690
    • Lam, K.N.1    Van Bakel, H.2    Cote, A.G.3    Van Der Ven, A.4    Hughes, T.R.5
  • 27
    • 5444264022 scopus 로고    scopus 로고
    • Translation reinitiation at alternative open reading frames regulates gene expression in an integrated stress response
    • DOI 10.1083/jcb.200408003
    • Lu PD, HardingHP, Ron D. 2004. Translation reinitiation at alternative open reading frames regulates gene expression in an integrated stress response. J Cell Biol 167: 27-33. (Pubitemid 39363411)
    • (2004) Journal of Cell Biology , vol.167 , Issue.1 , pp. 27-33
    • Lu, P.D.1    Harding, H.P.2    Ron, D.3
  • 28
    • 0024342686 scopus 로고
    • Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs
    • DOI 10.1016/0092-8674(89)90430-3
    • Meehan RR, Lewis JD, McKay S, Kleiner EL, Bird AP. 1989. Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs. Cell 58: 499-507. (Pubitemid 19203534)
    • (1989) Cell , vol.58 , Issue.3 , pp. 499-507
    • Meehan, R.R.1    Lewis, J.D.2    McKay, S.3    Kleiner, E.L.4    Bird, A.P.5
  • 29
    • 0038350876 scopus 로고    scopus 로고
    • Structural basis for DNA recognition by the basic region leucine zipper transcription factor CCAAT/enhancer-binding protein α
    • DOI 10.1074/jbc.M300417200
    • Miller M, Shuman JD, Sebastian T, Dauter Z, Johnson PF. 2003. Structural basis for DNA recognition by the basic region leucine zipper transcription factor CCAAT/enhancer-binding protein a. J Biol Chem 278: 15178-15184. (Pubitemid 36799852)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.17 , pp. 15178-15184
    • Miller, M.1    Shuman, J.D.2    Sebastian, T.3    Dauter, Z.4    Johnson, P.F.5
  • 30
    • 79955929541 scopus 로고    scopus 로고
    • Transcriptional regulation of activating transcription factor 4 under oxidative stress in retinal pigment epithelial ARPE-19/HPV-16 cells
    • Miyamoto N, Izumi H, Miyamoto R, Bin H, Kondo H, Tawara A, Sasaguri Y, Kohno K. 2011. Transcriptional regulation of activating transcription factor 4 under oxidative stress in retinal pigment epithelial ARPE-19/HPV-16 cells. Invest Ophthalmol Vis Sci 52: 1226-1234.
    • (2011) Invest Ophthalmol Vis Sci , vol.52 , pp. 1226-1234
    • Miyamoto, N.1    Izumi, H.2    Miyamoto, R.3    Bin, H.4    Kondo, H.5    Tawara, A.6    Sasaguri, Y.7    Kohno, K.8
  • 31
    • 0036493249 scopus 로고    scopus 로고
    • Magnesium is required for specific DNA binding of the CREB B-ZIP domain
    • Moll JR, Acharya A, Gal J, Mir AA, Vinson C. 2002. Magnesium is required for specificDNA binding of theCREB B-ZIP domain. Nucleic Acids Res 30: 1240-1246. (Pubitemid 34679698)
    • (2002) Nucleic Acids Research , vol.30 , Issue.5 , pp. 1240-1246
    • Moll, J.R.1    Acharya, A.2    Gal, J.3    Mir, A.A.4    Vinson, C.5
  • 32
    • 0037595546 scopus 로고    scopus 로고
    • Comprehensive identification of human bZIP interactions with coiled-coil arrays
    • DOI 10.1126/science.1084648
    • Newman JR, Keating AE. 2003. Comprehensive identification of human bZIP interactions with coiled-coil arrays. Science 300: 2097-2101. (Pubitemid 36760137)
    • (2003) Science , vol.300 , Issue.5628 , pp. 2097-2101
    • Newman, J.R.S.1    Keating, A.E.2
  • 33
    • 45449088853 scopus 로고    scopus 로고
    • Design of compact, universal DNA microarrays for protein binding microarray experiments
    • Philippakis AA,Qureshi AM, Berger MF, Bulyk ML. 2008. Design of compact, universal DNA microarrays for protein binding microarray experiments. J Comput Biol 15: 655-665.
    • (2008) J Comput Biol , vol.15 , pp. 655-665
    • Philippakis, A.A.1    Qureshi, A.M.2    Berger, M.F.3    Bulyk, M.L.4
  • 35
    • 0028221677 scopus 로고
    • A T7 expression vector for producing N- and C-terminal fusion proteins with glutathione S-transferase
    • DOI 10.1016/0378-1119(94)90789-7
    • Sharrocks AD. 1994. AT7 expression vector for producing N- and C-terminal fusion proteins with glutathione S-transferase. Gene 138: 105-108. (Pubitemid 24087558)
    • (1994) Gene , vol.138 , Issue.1-2 , pp. 105-108
    • Sharrocks, A.D.1
  • 41
    • 0024370748 scopus 로고
    • Scissors-grip model for DNA recognition by a family of leucine zipper proteins
    • Vinson CR, Sigler PB, McKnight SL. 1989. Scissors-grip model for DNA recognition by a family of leucine zipper proteins. Science 246: 911-916. (Pubitemid 20010501)
    • (1989) Science , vol.246 , Issue.4932 , pp. 911-916
    • Vinson, C.R.1    Sigler, P.B.2    McKnight, S.L.3
  • 42
    • 0027176792 scopus 로고
    • Dimerization specificity of the leucine zipper-containing bZIP motif on DNA binding: Prediction and rational design
    • Vinson CR, Hai T, Boyd SM. 1993. Dimerization specificity of the leucine zipper-containing bZIP motif on DNA binding: Prediction and rational design. Genes Dev 7: 1047-1058. (Pubitemid 23170828)
    • (1993) Genes and Development , vol.7 , Issue.6 , pp. 1047-1058
    • Vinson, C.R.1    Hai, T.2    Boyd, S.M.3
  • 44
    • 84055172799 scopus 로고    scopus 로고
    • Fabrication of duplex DNA microarrays incorporating methyl-5-cytosine
    • Warren CL, Zhao J, Glass K, Rishi V, Ansari AZ, Vinson C. 2012. Fabrication of duplex DNA microarrays incorporating methyl-5-cytosine. Lab Chip 12: 376-380.
    • (2012) Lab Chip , vol.12 , pp. 376-380
    • Warren, C.L.1    Zhao, J.2    Glass, K.3    Rishi, V.4    Ansari, A.Z.5    Vinson, C.6
  • 45
    • 34047116826 scopus 로고    scopus 로고
    • Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
    • DOI 10.1038/ng1990, PII NG1990
    • Weber M, Hellmann I, Stadler MB, Ramos L, Paabo S, Rebhan M, Schubeler D. 2007. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nat Genet 39: 457-466. (Pubitemid 46514772)
    • (2007) Nature Genetics , vol.39 , Issue.4 , pp. 457-466
    • Weber, M.1    Hellmann, I.2    Stadler, M.B.3    Ramos, L.4    Paabo, S.5    Rebhan, M.6    Schubeler, D.7
  • 46
    • 0032915521 scopus 로고    scopus 로고
    • Regulation of transcription factor C/ATF by the cAMP signal activation in hippocampal neurons, and molecular interaction of C/ATF with signal integrator CBP/p300
    • DOI 10.1016/S0169-328X(99)00086-8, PII S0169328X99000868
    • Yukawa K, Tanaka T, Tsuji S, Akira S. 1999. Regulation of transcription factor C/ATF by the cAMP signal activation in hippocampal neurons, and molecular interaction of C/ATF with signal integrator CBP/p300. Brain Res Mol Brain Res 69: 124-134. (Pubitemid 29238193)
    • (1999) Molecular Brain Research , vol.69 , Issue.1 , pp. 124-134
    • Yukawa, K.1    Tanaka, T.2    Tsuji, S.3    Akira, S.4


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