메뉴 건너뛰기




Volumn 14, Issue 6, 2013, Pages 10958-10978

Integrated -omics: A powerful approach to understanding the heterogeneous lignification of fibre crops

Author keywords

omics; Bast fibres; Fibre crops; Lignin; Secondary cell wall; Systems biology

Indexed keywords

CANNABIS; LIGNIN;

EID: 84878468755     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms140610958     Document Type: Review
Times cited : (44)

References (145)
  • 1
    • 80052307173 scopus 로고    scopus 로고
    • Evaluation of the chemical composition of different non-woody plant fibers used for pulp and paper manufacturing
    • Marques, G.; Rencoret, J.; Gutiérrez, A.; del Río, J.C. Evaluation of the chemical composition of different non-woody plant fibers used for pulp and paper manufacturing. Open Agric. J. 2010, 4, 93-101.
    • (2010) Open Agric. J. , vol.4 , pp. 93-101
    • Marques, G.1    Rencoret, J.2    Gutiérrez, A.3    del Río, J.C.4
  • 2
    • 43549121467 scopus 로고    scopus 로고
    • Harnessing plant biomass for biofuels and biomaterials
    • Benning, C.; Pichersky, E. Harnessing plant biomass for biofuels and biomaterials. Plant J. 2008, 54, 533-535.
    • (2008) Plant J. , vol.54 , pp. 533-535
    • Benning, C.1    Pichersky, E.2
  • 4
    • 0003131140 scopus 로고
    • The Global Fiber Resource Picture
    • In Forest Products Research Society: Madison, WI, USA
    • McNutt, J.A.; Haegglom, R.; Raemoe, K. The Global Fiber Resource Picture. In Wood Product Demand and the Environment; Forest Products Research Society: Madison, WI, USA, 1992; pp. 39-53.
    • (1992) Wood Product Demand and the Environment , pp. 39-53
    • McNutt, J.A.1    Haegglom, R.2    Raemoe, K.3
  • 5
    • 79960444016 scopus 로고    scopus 로고
    • Lignocellulosic Materials From Annual Plants and Agricultural Residues As Raw Materials For Composite Building Materials
    • In Thessaloniki, Greece, 27 August-1 September
    • Philippou, L.; Karastergiou, S. Lignocellulosic Materials From Annual Plants and Agricultural Residues As Raw Materials For Composite Building Materials. In Proceedings of International Conference Forest Research: A Challenge for an Integrated European Approach, Thessaloniki, Greece, 27 August-1 September 2001; Volume II, pp. 817-821.
    • (2001) Proceedings of International Conference Forest Research: A Challenge for an Integrated European Approach , vol.2 , pp. 817-821
    • Philippou, L.1    Karastergiou, S.2
  • 6
    • 11444264189 scopus 로고    scopus 로고
    • Biofibers from agricultural byproducts for industrial applications
    • Reddy, N.; Yang, Y. Biofibers from agricultural byproducts for industrial applications. Trends Biotechnol. 2005, 23, 22-27.
    • (2005) Trends Biotechnol. , vol.23 , pp. 22-27
    • Reddy, N.1    Yang, Y.2
  • 7
    • 0031731221 scopus 로고    scopus 로고
    • Effect of environmental relative humidity and damage on the tensile properties of flax and nettle fibers
    • Davies, G.C.; Bruce, D.M. Effect of environmental relative humidity and damage on the tensile properties of flax and nettle fibers. Textil. Res. J. 1998, 68, 623-629.
    • (1998) Textil. Res. J. , vol.68 , pp. 623-629
    • Davies, G.C.1    Bruce, D.M.2
  • 8
    • 33745169005 scopus 로고    scopus 로고
    • Effect of plant growth regulators on the quality of bast fibres in Abelmoschus esculentus (Linn.) Moench
    • Fathima, M.; Balasubramanian, A. Effect of plant growth regulators on the quality of bast fibres in Abelmoschus esculentus (Linn.) Moench. Acta Bot. Croat. 2006, 65, 101-112.
    • (2006) Acta Bot. Croat. , vol.65 , pp. 101-112
    • Fathima, M.1    Balasubramanian, A.2
  • 10
    • 77952325080 scopus 로고    scopus 로고
    • Plant fibers: Initiation, growth, model plants, and open questions
    • Lev-Yadun, S. Plant fibers: Initiation, growth, model plants, and open questions. Russ. J. Plant Physiol. 2010, 57, 305-315.
    • (2010) Russ. J. Plant Physiol. , vol.57 , pp. 305-315
    • Lev-Yadun, S.1
  • 12
    • 34250191497 scopus 로고    scopus 로고
    • ANAC012, a member of the plant-specific NAC transcription factor family, negatively regulates xylary fiber development in Arabidopsis thaliana
    • Ko, J.H.; Yang, S.H.; Park, A.H.; Lerouxel, O.; Han, K.H. ANAC012, a member of the plant-specific NAC transcription factor family, negatively regulates xylary fiber development in Arabidopsis thaliana. Plant J. 2007, 50, 1035-1048.
    • (2007) Plant J. , vol.50 , pp. 1035-1048
    • Ko, J.H.1    Yang, S.H.2    Park, A.H.3    Lerouxel, O.4    Han, K.H.5
  • 13
    • 34247350741 scopus 로고    scopus 로고
    • NAC transcription factors, NST1 and NST3, are key regulators of the formation of secondary walls in woody tissues of Arabidopsis
    • Mitsuda, N.; Iwase, A.; Yamamoto, H.; Yoshida, M.; Seki, M.; Shinozaki, K.; Ohme-Takagi, M. NAC transcription factors, NST1 and NST3, are key regulators of the formation of secondary walls in woody tissues of Arabidopsis. Plant Cell 2007, 19, 270-280.
    • (2007) Plant Cell , vol.19 , pp. 270-280
    • Mitsuda, N.1    Iwase, A.2    Yamamoto, H.3    Yoshida, M.4    Seki, M.5    Shinozaki, K.6    Ohme-Takagi, M.7
  • 14
    • 35748936175 scopus 로고    scopus 로고
    • The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis
    • Zhong, R.; Richardson, E.A.; Ye, Z.H. The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis. Plant Cell 2007, 19, 2776-2792.
    • (2007) Plant Cell , vol.19 , pp. 2776-2792
    • Zhong, R.1    Richardson, E.A.2    Ye, Z.H.3
  • 15
    • 72449145911 scopus 로고    scopus 로고
    • Ectopic expression of MYB46 identifies transcriptional regulatory genes involved in secondary wall biosynthesis in Arabidopsis
    • Ko, J.H.; Kim, W.C.; Han, K.H. Ectopic expression of MYB46 identifies transcriptional regulatory genes involved in secondary wall biosynthesis in Arabidopsis. Plant J. 2009, 60, 649-665.
    • (2009) Plant J , vol.60 , pp. 649-665
    • Ko, J.H.1    Kim, W.C.2    Han, K.H.3
  • 16
    • 78249288759 scopus 로고    scopus 로고
    • MYB75 functions in regulation of secondary cell wall formation in the Arabidopsis inflorescence stem
    • Bhargava, A.; Mansfield, S.D.; Hall, H.C.; Douglas, C.J.; Ellis, B.E. MYB75 functions in regulation of secondary cell wall formation in the Arabidopsis inflorescence stem. Plant Physiol. 2010, 154, 1428-1438.
    • (2010) Plant Physiol. , vol.154 , pp. 1428-1438
    • Bhargava, A.1    Mansfield, S.D.2    Hall, H.C.3    Douglas, C.J.4    Ellis, B.E.5
  • 17
    • 84897102449 scopus 로고    scopus 로고
    • Regulation of plant biomass production
    • Demura, T.; Ye, Z.H. Regulation of plant biomass production. Curr. Opin. Plant Biol. 2010, 13, 299-304.
    • (2010) Curr. Opin. Plant Biol. , vol.13 , pp. 299-304
    • Demura, T.1    Ye, Z.H.2
  • 18
    • 78649527157 scopus 로고    scopus 로고
    • Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation
    • Ohashi-Ito, K.; Oda, Y.; Fukuda, H. Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation. Plant Cell 2010, 22, 3461-3473.
    • (2010) Plant Cell , vol.22 , pp. 3461-3473
    • Ohashi-Ito, K.1    Oda, Y.2    Fukuda, H.3
  • 19
    • 78649862688 scopus 로고    scopus 로고
    • Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis
    • Zhong, R.; Lee, C.; Ye, Z.H. Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis. Mol. Plant 2010, 3, 1087-1103.
    • (2010) Mol. Plant , vol.3 , pp. 1087-1103
    • Zhong, R.1    Lee, C.2    Ye, Z.H.3
  • 20
    • 77954291222 scopus 로고    scopus 로고
    • VASCULAR-RELATED NAC-DOMAIN6 and VASCULAR-RELATED NAC-DOMAIN7 effectively induce transdifferentiation into xylem vessel elements under control of an induction system
    • Yamaguchi, M.; Goué, N.; Igarashi, H.; Ohtani, M.; Nakano, Y.; Mortimer, J.C.; Nishikubo, N.; Kubo, M.; Katayama, Y.; Kakegawa, K.; et al. VASCULAR-RELATED NAC-DOMAIN6 and VASCULAR-RELATED NAC-DOMAIN7 effectively induce transdifferentiation into xylem vessel elements under control of an induction system. Plant Physiol. 2010, 153, 906-914.
    • (2010) Plant Physiol. , vol.153 , pp. 906-914
    • Yamaguchi, M.1    Goué, N.2    Igarashi, H.3    Ohtani, M.4    Nakano, Y.5    Mortimer, J.C.6    Nishikubo, N.7    Kubo, M.8    Katayama, Y.9    Kakegawa, K.10
  • 21
    • 79955852269 scopus 로고    scopus 로고
    • VASCULAR-RELATED NAC-DOMAIN7 directly regulates the expression of a broad range of genes for xylem vessel formation
    • Yamaguchi, M.; Mitsuda, N.; Ohtani, M.; Ohme-Takagi, M.; Kato, K.; Demura, T. VASCULAR-RELATED NAC-DOMAIN7 directly regulates the expression of a broad range of genes for xylem vessel formation. Plant J. 2011, 66, 579-590.
    • (2011) Plant J. , vol.66 , pp. 579-590
    • Yamaguchi, M.1    Mitsuda, N.2    Ohtani, M.3    Ohme-Takagi, M.4    Kato, K.5    Demura, T.6
  • 22
    • 83555172324 scopus 로고    scopus 로고
    • NAC domain function and transcriptional control of a secondary cell wall master switch
    • Wang, H.; Zhao, Q.; Chen, F.; Wang, M.; Dixon, R.A. NAC domain function and transcriptional control of a secondary cell wall master switch. Plant J. 2011, 68, 1104-1114.
    • (2011) Plant J. , vol.68 , pp. 1104-1114
    • Wang, H.1    Zhao, Q.2    Chen, F.3    Wang, M.4    Dixon, R.A.5
  • 23
    • 79960214670 scopus 로고    scopus 로고
    • OVATE FAMILY PROTEIN4 (OFP4) interaction with KNAT7 regulates secondary cell wall formation in Arabidopsis thaliana
    • Li, E.; Wang, S.; Liu, Y.; Chen, J.G.; Douglas, C.J. OVATE FAMILY PROTEIN4 (OFP4) interaction with KNAT7 regulates secondary cell wall formation in Arabidopsis thaliana. Plant J. 2011, 67, 328-341.
    • (2011) Plant J. , vol.67 , pp. 328-341
    • Li, E.1    Wang, S.2    Liu, Y.3    Chen, J.G.4    Douglas, C.J.5
  • 24
    • 84856880107 scopus 로고    scopus 로고
    • Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis
    • Kim, W.C.; Ko, J.H.; Han, K.H. Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis. Plant Mol. Biol. 2012, 78, 489-501.
    • (2012) Plant Mol. Biol. , vol.78 , pp. 489-501
    • Kim, W.C.1    Ko, J.H.2    Han, K.H.3
  • 26
    • 84876733023 scopus 로고    scopus 로고
    • The interacting MYB75 and KNAT7 transcription factors modulate secondary cell wall deposition both in stems and seed coat in Arabidopsis
    • Bhargava, A.; Ahad, A.; Wang, S.; Mansfield, S.D.; Haughn, G.W.; Douglas, C.J.; Ellis, B.E. The interacting MYB75 and KNAT7 transcription factors modulate secondary cell wall deposition both in stems and seed coat in Arabidopsis. Planta 2013, 237, 1199-11211.
    • (2013) Planta , vol.237 , pp. 1199-11211
    • Bhargava, A.1    Ahad, A.2    Wang, S.3    Mansfield, S.D.4    Haughn, G.W.5    Douglas, C.J.6    Ellis, B.E.7
  • 28
    • 0036949462 scopus 로고    scopus 로고
    • The cellulose-deficient Arabidopsis mutant rsw3 is defective in a gene encoding a putative glucosidase II, an enzyme processing N-glycans during ER quality control
    • Burn, J.E.; Hurley, U.A.; Birch, R.J.; Arioli, T.; Cork, A.; Williamson, R.E. The cellulose-deficient Arabidopsis mutant rsw3 is defective in a gene encoding a putative glucosidase II, an enzyme processing N-glycans during ER quality control. Plant J. 2002, 32, 949-960.
    • (2002) Plant J. , vol.32 , pp. 949-960
    • Burn, J.E.1    Hurley, U.A.2    Birch, R.J.3    Arioli, T.4    Cork, A.5    Williamson, R.E.6
  • 29
    • 0038120071 scopus 로고    scopus 로고
    • Expression of a mutant form of cellulose synthase AtCesA7 causes dominant negative effect on cellulose biosynthesis
    • Zhong, R.; Morrison, W.H., 3rd; Freshour, G.D.; Hahn, M.G.; Ye, Z.H. Expression of a mutant form of cellulose synthase AtCesA7 causes dominant negative effect on cellulose biosynthesis. Plant Physiol. 2003, 132, 786-795.
    • (2003) Plant Physiol. , vol.132 , pp. 786-795
    • Zhong, R.1    Morrison III, W.H.2    Freshour, G.D.3    Hahn, M.G.4    Ye, Z.H.5
  • 30
    • 1542349039 scopus 로고    scopus 로고
    • The irregular xylem 2 mutant is an allele of korrigan that affects the secondary cell wall of Arabidopsis thaliana
    • Szyjanowicz, P.M.; McKinnon, I.; Taylor, N.G.; Gardiner, J.; Jarvis, M.C.; Turner, S.R. The irregular xylem 2 mutant is an allele of korrigan that affects the secondary cell wall of Arabidopsis thaliana. Plant J. 2004, 37, 730-740.
    • (2004) Plant J. , vol.37 , pp. 730-740
    • Szyjanowicz, P.M.1    McKinnon, I.2    Taylor, N.G.3    Gardiner, J.4    Jarvis, M.C.5    Turner, S.R.6
  • 31
    • 22544465293 scopus 로고    scopus 로고
    • Disruption of the cellulose synthase gene, AtCesA8/IRX1, enhances drought and osmotic stress tolerance in Arabidopsis
    • Chen, Z.; Hong, X.; Zhang, H.; Wang, Y.; Li, X.; Zhu, J.K.; Gong, Z. Disruption of the cellulose synthase gene, AtCesA8/IRX1, enhances drought and osmotic stress tolerance in Arabidopsis. Plant J. 2005, 43, 273-283.
    • (2005) Plant J. , vol.43 , pp. 273-283
    • Chen, Z.1    Hong, X.2    Zhang, H.3    Wang, Y.4    Li, X.5    Zhu, J.K.6    Gong, Z.7
  • 32
    • 33745370660 scopus 로고    scopus 로고
    • Cell-wall structure and anisotropy in procuste, a cellulose synthase mutant of Arabidopsis thaliana
    • MacKinnon, I.M.; Sturcová, A.; Sugimoto-Shirasu, K.; His, I; McCann, M.C.; Jarvis, M.C. Cell-wall structure and anisotropy in procuste, a cellulose synthase mutant of Arabidopsis thaliana. Planta 2006, 224, 438-448.
    • (2006) Planta , vol.224 , pp. 438-448
    • McKinnon, I.M.1    Sturcová, A.2    Sugimoto-Shirasu, K.3    His, I.4    McCann, M.C.5    Jarvis, M.C.6
  • 33
    • 33846395476 scopus 로고    scopus 로고
    • Knockout of the AtCESA2 gene affects microtubule orientation and causes abnormal cell expansion in Arabidopsis
    • Chu, Z.; Chen, H.; Zhang, Y.; Zhang, Z.; Zheng, N.; Yin, B.; Yan, H.; Zhu, L.; Zhao, X.; Yuan, M.; et al. Knockout of the AtCESA2 gene affects microtubule orientation and causes abnormal cell expansion in Arabidopsis. Plant Physiol. 2007, 143, 213-224.
    • (2007) Plant Physiol. , vol.143 , pp. 213-224
    • Chu, Z.1    Chen, H.2    Zhang, Y.3    Zhang, Z.4    Zheng, N.5    Yin, B.6    Yan, H.7    Zhu, L.8    Zhao, X.9    Yuan, M.10
  • 34
    • 34249809434 scopus 로고    scopus 로고
    • The Arabidopsis irregular xylem8 mutant is deficient in glucuronoxylan and homogalacturonan, which are essential for secondary cell wall integrity
    • Persson, S.; Caffall, K.H.; Freshour, G.; Hilley, M.T.; Bauer, S.; Poindexter, P.; Hahn, M.G.; Mohnen, D.; Somerville, C. The Arabidopsis irregular xylem8 mutant is deficient in glucuronoxylan and homogalacturonan, which are essential for secondary cell wall integrity. Plant Cell 2007, 19, 237-255.
    • (2007) Plant Cell , vol.19 , pp. 237-255
    • Persson, S.1    Caffall, K.H.2    Freshour, G.3    Hilley, M.T.4    Bauer, S.5    Poindexter, P.6    Hahn, M.G.7    Mohnen, D.8    Somerville, C.9
  • 35
    • 84857769872 scopus 로고    scopus 로고
    • POM-POM2/cellulose synthase interacting1 is essential for the functional association of cellulose synthase and microtubules in Arabidopsis
    • Bringmann, M.; Li, E.; Sampathkumar, A.; Kocabek, T.; Hauser, M.T.; Persson, S. POM-POM2/cellulose synthase interacting1 is essential for the functional association of cellulose synthase and microtubules in Arabidopsis. Plant Cell 2012, 24, 163-177.
    • (2012) Plant Cell , vol.24 , pp. 163-177
    • Bringmann, M.1    Li, E.2    Sampathkumar, A.3    Kocabek, T.4    Hauser, M.T.5    Persson, S.6
  • 39
    • 57749101097 scopus 로고    scopus 로고
    • MAP20, a microtubule-associated protein in the secondary cell walls of hybrid aspen, is a target of the cellulose synthesis inhibitor 2,6-dichlorobenzonitrile
    • Rajangam, A.S.; Kumar, M.; Aspeborg, H.; Guerriero, G.; Arvestad, L.; Pansri, P.; Brown, C.J.; Hober, S.; Blomqvist, K.; Divne, C.; et al. MAP20, a microtubule-associated protein in the secondary cell walls of hybrid aspen, is a target of the cellulose synthesis inhibitor 2,6-dichlorobenzonitrile. Plant Physiol. 2008, 148, 1283-1294.
    • (2008) Plant Physiol. , vol.148 , pp. 1283-1294
    • Rajangam, A.S.1    Kumar, M.2    Aspeborg, H.3    Guerriero, G.4    Arvestad, L.5    Pansri, P.6    Brown, C.J.7    Hober, S.8    Blomqvist, K.9    Divne, C.10
  • 40
    • 77950492955 scopus 로고    scopus 로고
    • Conserved CA-rich motifs in gene promoters of Pt x tMYB021-responsive secondary cell wall carbohydrate-active enzymes in Populus
    • Winzell, A.; Aspeborg, H.; Wang, Y.; Ezcurra, I. Conserved CA-rich motifs in gene promoters of Pt x tMYB021-responsive secondary cell wall carbohydrate-active enzymes in Populus. Biochem. Biophys. Res. Commun. 2010, 394, 848-853.
    • (2010) Biochem. Biophys. Res. Commun. , vol.394 , pp. 848-853
    • Winzell, A.1    Aspeborg, H.2    Wang, Y.3    Ezcurra, I.4
  • 41
    • 77953685124 scopus 로고    scopus 로고
    • Characterization of NAC domain transcription factors implicated in control of vascular cell differentiation in Arabidopsis and Populus
    • Grant, E.H.; Fujino, T.; Beers, E.P.; Brunner, A.M. Characterization of NAC domain transcription factors implicated in control of vascular cell differentiation in Arabidopsis and Populus. Planta 2010, 232, 337-352.
    • (2010) Planta , vol.232 , pp. 337-352
    • Grant, E.H.1    Fujino, T.2    Beers, E.P.3    Brunner, A.M.4
  • 42
    • 80455173514 scopus 로고    scopus 로고
    • Dissection of the transcriptional program regulating secondary wall biosynthesis during wood formation in poplar
    • Zhong, R.; McCarthy, R.L.; Lee, C.; Ye, Z.H. Dissection of the transcriptional program regulating secondary wall biosynthesis during wood formation in poplar. Plant Physiol. 2011, 157, 1452-1468.
    • (2011) Plant Physiol. , vol.157 , pp. 1452-1468
    • Zhong, R.1    McCarthy, R.L.2    Lee, C.3    Ye, Z.H.4
  • 43
    • 80053219980 scopus 로고    scopus 로고
    • Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics
    • Yang, X.; Ye, C.Y.; Bisaria, A.; Tuskan, G.A.; Kalluri, U.C. Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics. Plant Sci. 2011, 181, 675-687.
    • (2011) Plant Sci. , vol.181 , pp. 675-687
    • Yang, X.1    Ye, C.Y.2    Bisaria, A.3    Tuskan, G.A.4    Kalluri, U.C.5
  • 44
    • 84871688539 scopus 로고    scopus 로고
    • Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa
    • Li, Q.; Lin, Y.C.; Sun, Y.H.; Song, J.; Chen, H.; Zhang, X.H.; Sederoff, R.R.; Chiang, V.L. Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa. Proc. Natl. Acad. Sci. USA 2012, 109, 14699-14704.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 14699-14704
    • Li, Q.1    Lin, Y.C.2    Sun, Y.H.3    Song, J.4    Chen, H.5    Zhang, X.H.6    Sederoff, R.R.7    Chiang, V.L.8
  • 45
    • 84874442145 scopus 로고    scopus 로고
    • Sense-, antisense-and RNAi-4CL1 regulate soluble phenolic acids, cell wall components and growth in transgenic Populus tomentosa Carr
    • Tian, X.; Xie, J.; Zhao, Y.; Lu, H.; Liu, S.; Qu, L.; Li, J.; Gai, Y.; Jiang, X. Sense-, antisense-and RNAi-4CL1 regulate soluble phenolic acids, cell wall components and growth in transgenic Populus tomentosa Carr. Plant Physiol. Biochem. 2013, 65, 111-119.
    • (2013) Plant Physiol. Biochem. , vol.65 , pp. 111-119
    • Tian, X.1    Xie, J.2    Zhao, Y.3    Lu, H.4    Liu, S.5    Qu, L.6    Li, J.7    Gai, Y.8    Jiang, X.9
  • 49
    • 77954291233 scopus 로고    scopus 로고
    • An NAC transcription factor orchestrates multiple features of cell wall development in Medicago truncatula
    • Zhao, Q.; Gallego-Giraldo, L.; Wang, H.; Zeng, Y.; Ding, S.Y.; Chen, F.; Dixon, R.A. An NAC transcription factor orchestrates multiple features of cell wall development in Medicago truncatula. Plant J. 2010, 63, 100-114.
    • (2010) Plant J. , vol.63 , pp. 100-114
    • Zhao, Q.1    Gallego-Giraldo, L.2    Wang, H.3    Zeng, Y.4    Ding, S.Y.5    Chen, F.6    Dixon, R.A.7
  • 50
    • 79955120860 scopus 로고    scopus 로고
    • Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems
    • Yang, S.S.; Tu, Z.J.; Cheung, F.; Xu, W.W.; Lamb, J.F.; Jung, H.J.; Vance, C.P.; Gronwald, J.W. Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems. BMC Genomics 2011, 12, 199.
    • (2011) BMC Genomics , vol.12 , pp. 199
    • Yang, S.S.1    Tu, Z.J.2    Cheung, F.3    Xu, W.W.4    Lamb, J.F.5    Jung, H.J.6    Vance, C.P.7    Gronwald, J.W.8
  • 51
    • 79958142451 scopus 로고    scopus 로고
    • Integrative analysis of transgenic alfalfa (Medicago sativa L.) suggests new metabolic control mechanisms for monolignol biosynthesis
    • Lee, Y.; Chen, F.; Gallego-Giraldo, L.; Dixon, R.A.; Voit, E.O. Integrative analysis of transgenic alfalfa (Medicago sativa L.) suggests new metabolic control mechanisms for monolignol biosynthesis. PLoS Comput. Biol. 2011, 7, e1002047.
    • (2011) PLoS Comput. Biol. , vol.7
    • Lee, Y.1    Chen, F.2    Gallego-Giraldo, L.3    Dixon, R.A.4    Voit, E.O.5
  • 54
    • 33644647421 scopus 로고    scopus 로고
    • The long past of systems biology
    • Bothwell, J.H. The long past of systems biology. New Phytol. 2006, 170, 6-10.
    • (2006) New Phytol. , vol.170 , pp. 6-10
    • Bothwell, J.H.1
  • 56
    • 84866934692 scopus 로고    scopus 로고
    • The phenylpropanoid pathway in Arabidopsis
    • Fraser, C.M.; Chapple, C. The phenylpropanoid pathway in Arabidopsis. Arabidopsis Book 2011, 9, e0152.
    • (2011) Arabidopsis Book , vol.9
    • Fraser, C.M.1    Chapple, C.2
  • 57
    • 0034979805 scopus 로고    scopus 로고
    • Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology
    • Winkel-Shirley, B. Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology. Plant Physiol. 2001, 126, 485-493.
    • (2001) Plant Physiol. , vol.126 , pp. 485-493
    • Winkel-Shirley, B.1
  • 58
    • 34248639844 scopus 로고    scopus 로고
    • Introduction of sense constructs of cinnamate 4-hydroxylase (CYP73A24) in transgenic tomato plants shows opposite effects on flux into stem lignin and fruit flavonoids
    • Millar, D.J.; Long, M.; Donovan, G.; Fraser, P.D.; Boudet, A.M.; Danoun, S.; Bramley, P.M.; Bolwell, G.P. Introduction of sense constructs of cinnamate 4-hydroxylase (CYP73A24) in transgenic tomato plants shows opposite effects on flux into stem lignin and fruit flavonoids. Phytochemistry 2007, 68, 1497-1509.
    • (2007) Phytochemistry , vol.68 , pp. 1497-1509
    • Millar, D.J.1    Long, M.2    Donovan, G.3    Fraser, P.D.4    Boudet, A.M.5    Danoun, S.6    Bramley, P.M.7    Bolwell, G.P.8
  • 59
    • 78149439015 scopus 로고    scopus 로고
    • The genetics of lignin biosynthesis: Connecting genotype to phenotype
    • Bonawitz, N.D.; Chapple, C. The genetics of lignin biosynthesis: Connecting genotype to phenotype. Annu. Rev. Genet. 2010, 44, 337-363.
    • (2010) Annu. Rev. Genet. , vol.44 , pp. 337-363
    • Bonawitz, N.D.1    Chapple, C.2
  • 61
    • 84855724087 scopus 로고    scopus 로고
    • Engineering better biomass-degrading ability into a GH11 xylanase using a directed evolution strategy
    • Song, L.; Siguier, B.; Dumon, C.; Bozonnet, S.; O'Donohue, M.J. Engineering better biomass-degrading ability into a GH11 xylanase using a directed evolution strategy. Biotechnol. Biofuels 2012, 5, 3.
    • (2012) Biotechnol. Biofuels , vol.5 , pp. 3
    • Song, L.1    Siguier, B.2    Dumon, C.3    Bozonnet, S.4    O'Donohue, M.J.5
  • 63
    • 84874994487 scopus 로고    scopus 로고
    • Can genetic engineering of lignin deposition be accomplished without an unacceptable yield penalty?
    • Bonawitz, N.D.; Chapple, C. Can genetic engineering of lignin deposition be accomplished without an unacceptable yield penalty? Curr. Opin. Biotechnol. 2013, 24, 336-343.
    • (2013) Curr. Opin. Biotechnol. , vol.24 , pp. 336-343
    • Bonawitz, N.D.1    Chapple, C.2
  • 64
    • 33748696780 scopus 로고    scopus 로고
    • Multi-site genetic modulation of monolignol biosynthesis suggests new routes for formation of syringyl lignin and wall-bound ferulic acid in alfalfa (Medicago sativa L.)
    • Chen, F.; Srinivasa Reddy, M.S.; Temple, S.; Jackson, L.; Shadle, G.; Dixon, R.A. Multi-site genetic modulation of monolignol biosynthesis suggests new routes for formation of syringyl lignin and wall-bound ferulic acid in alfalfa (Medicago sativa L.). Plant J. 2006, 48, 113-124.
    • (2006) Plant J. , vol.48 , pp. 113-124
    • Chen, F.1    Srinivasa Reddy, M.S.2    Temple, S.3    Jackson, L.4    Shadle, G.5    Dixon, R.A.6
  • 65
    • 34248541296 scopus 로고    scopus 로고
    • Down-regulation of hydroxycinnamoyl CoA: Shikimate hydroxycinnamoyl transferase in transgenic alfalfa affects lignification, development and forage quality
    • Shadle, G.; Chen, F.; Srinivasa Reddy, M.S.; Jackson, L.; Nakashima, J.; Dixon, R.A. Down-regulation of hydroxycinnamoyl CoA: Shikimate hydroxycinnamoyl transferase in transgenic alfalfa affects lignification, development and forage quality. Phytochemistry 2007, 68, 1521-1529.
    • (2007) Phytochemistry , vol.68 , pp. 1521-1529
    • Shadle, G.1    Chen, F.2    Srinivasa Reddy, M.S.3    Jackson, L.4    Nakashima, J.5    Dixon, R.A.6
  • 66
    • 48249155353 scopus 로고    scopus 로고
    • Multi-site genetic modification of monolignol biosynthesis in alfalfa (Medicago sativa): Effects on lignin composition in specific cell types
    • Nakashima, J.; Chen, F.; Jackson, L.; Shadle, G.; Dixon, R.A. Multi-site genetic modification of monolignol biosynthesis in alfalfa (Medicago sativa): Effects on lignin composition in specific cell types. New Phytol. 2008, 179, 738-750.
    • (2008) New Phytol. , vol.179 , pp. 738-750
    • Nakashima, J.1    Chen, F.2    Jackson, L.3    Shadle, G.4    Dixon, R.A.5
  • 67
    • 80054835879 scopus 로고    scopus 로고
    • Silencing of 4-coumarate:Coenzyme A ligase in switchgrass leads to reduced lignin content and improved fermentable sugar yields for biofuel production
    • Xu, B.; Escamilla-Treviño, L.L.; Sathitsuksanoh, N.; Shen, Z.; Shen, H.; Zhang, Y.H.; Dixon, R.A.; Zhao, B. Silencing of 4-coumarate:coenzyme A ligase in switchgrass leads to reduced lignin content and improved fermentable sugar yields for biofuel production. New Phytol. 2011, 192, 611-625.
    • (2011) New Phytol. , vol.192 , pp. 611-625
    • Xu, B.1    Escamilla-Treviño, L.L.2    Sathitsuksanoh, N.3    Shen, Z.4    Shen, H.5    Zhang, Y.H.6    Dixon, R.A.7    Zhao, B.8
  • 69
    • 79551707422 scopus 로고    scopus 로고
    • Coordinated activation of cellulose and repression of lignin biosynthesis pathways in rice
    • Ambavaram, M.M.; Krishnan, A.; Trijatmiko, K.R.; Pereira, A. Coordinated activation of cellulose and repression of lignin biosynthesis pathways in rice. Plant Physiol. 2011, 155, 916-931.
    • (2011) Plant Physiol. , vol.155 , pp. 916-931
    • Ambavaram, M.M.1    Krishnan, A.2    Trijatmiko, K.R.3    Pereira, A.4
  • 70
    • 84862998115 scopus 로고    scopus 로고
    • An efficient method for transient gene expression in monocots applied to modify the Brachypodium distachyon cell wall
    • Fursova, O.; Pogorelko, G.; Zabotina, O.A. An efficient method for transient gene expression in monocots applied to modify the Brachypodium distachyon cell wall. Ann Bot. 2012, 110, 47-56.
    • (2012) Ann Bot. , vol.110 , pp. 47-56
    • Fursova, O.1    Pogorelko, G.2    Zabotina, O.A.3
  • 71
    • 84881023585 scopus 로고    scopus 로고
    • RNA interference suppression of lignin biosynthesis increases fermentable sugar yields for biofuel production from field-grown sugarcane
    • doi:10.1111/pbi.12061
    • Jung, J.H.; Vermerris, W.; Gallo, M.; Fedenko, J.R.; Erickson, J.E.; Altpeter, F. RNA interference suppression of lignin biosynthesis increases fermentable sugar yields for biofuel production from field-grown sugarcane. Plant Biotechnol. J. 2013, doi:10.1111/pbi.12061.
    • (2013) Plant Biotechnol. J.
    • Jung, J.H.1    Vermerris, W.2    Gallo, M.3    Fedenko, J.R.4    Erickson, J.E.5    Altpeter, F.6
  • 72
    • 77953553243 scopus 로고    scopus 로고
    • Identifying new lignin bioengineering targets: 1. Monolignol-substitute impacts on lignin formation and cell wall fermentability
    • Grabber, J.H.; Schatz, P.F.; Kim, H.; Lu, F.; Ralph, J. Identifying new lignin bioengineering targets: 1. Monolignol-substitute impacts on lignin formation and cell wall fermentability. BMC Plant Biol. 2010, 10, 114.
    • (2010) BMC Plant Biol. , vol.10 , pp. 114
    • Grabber, J.H.1    Schatz, P.F.2    Kim, H.3    Lu, F.4    Ralph, J.5
  • 73
    • 84865344437 scopus 로고    scopus 로고
    • An engineered monolignol 4-O-methyltransferase depresses lignin biosynthesis and confers novel metabolic capability in Arabidopsis
    • Zhang, K.; Bhuiya, M.W.; Pazo, J.R.; Miao, Y.; Kim, H.; Ralph, J.; Liu, C.J. An engineered monolignol 4-O-methyltransferase depresses lignin biosynthesis and confers novel metabolic capability in Arabidopsis. Plant Cell 2012, 24, 3135-3152.
    • (2012) Plant Cell , vol.24 , pp. 3135-3152
    • Zhang, K.1    Bhuiya, M.W.2    Pazo, J.R.3    Miao, Y.4    Kim, H.5    Ralph, J.6    Liu, C.J.7
  • 74
    • 84864799840 scopus 로고    scopus 로고
    • Epigallocatechin gallate incorporation into lignin enhances the alkaline delignification and enzymatic saccharification of cell walls
    • Elumalai, S.; Tobimatsu, Y.; Grabber, J.H.; Pan, X.; Ralph, J. Epigallocatechin gallate incorporation into lignin enhances the alkaline delignification and enzymatic saccharification of cell walls. Biotechnol. Biofuels 2012, 5, 59.
    • (2012) Biotechnol. Biofuels , vol.5 , pp. 59
    • Elumalai, S.1    Tobimatsu, Y.2    Grabber, J.H.3    Pan, X.4    Ralph, J.5
  • 76
    • 26444552100 scopus 로고    scopus 로고
    • Lignification in the flax stem: Evidence for an unusual lignin in bast fibers
    • Day, A.; Ruel, K.; Neutelings, G.; Crônier, D.; David, H.; Hawkins, S.; Chabbert, B. Lignification in the flax stem: Evidence for an unusual lignin in bast fibers. Planta 2005, 222, 234-245.
    • (2005) Planta , vol.222 , pp. 234-245
    • Day, A.1    Ruel, K.2    Neutelings, G.3    Crônier, D.4    David, H.5    Hawkins, S.6    Chabbert, B.7
  • 77
    • 13844297129 scopus 로고    scopus 로고
    • ESTs from the fibre-bearing stem tissues of flax (Linum usitatissimum L.): Expression analyses of sequences related to cell wall development
    • Day, A.; Addi, M.; Kim, W.; David, H.; Bert, F.; Mesnage, P.; Rolando, C.; Chabbert, B.; Neutelings, G.; Hawkins, S. ESTs from the fibre-bearing stem tissues of flax (Linum usitatissimum L.): Expression analyses of sequences related to cell wall development. Plant Biol. 2005, 7, 23-32.
    • (2005) Plant Biol. , vol.7 , pp. 23-32
    • Day, A.1    Addi, M.2    Kim, W.3    David, H.4    Bert, F.5    Mesnage, P.6    Rolando, C.7    Chabbert, B.8    Neutelings, G.9    Hawkins, S.10
  • 78
    • 27644433985 scopus 로고    scopus 로고
    • Structure and chemical composition of bast fibers isolated from developing hemp stem
    • Crônier, D.; Monties, B.; Chabbert, B. Structure and chemical composition of bast fibers isolated from developing hemp stem. J. Agric. Food Chem. 2005, 53, 8279-8289.
    • (2005) J. Agric. Food Chem. , vol.53 , pp. 8279-8289
    • Crônier, D.1    Monties, B.2    Chabbert, B.3
  • 79
    • 34547125079 scopus 로고    scopus 로고
    • Microarray analysis of bast fibre producing tissue of Cannabis sativa identifies transcripts associated with conserved and specialised processes of secondary wall development
    • De Pauw, M.A.; Vidmar, J.J.; Collins, J.; Bennett, R.A.; Deyholos, M.K. Microarray analysis of bast fibre producing tissue of Cannabis sativa identifies transcripts associated with conserved and specialised processes of secondary wall development. Func. Plant Biol. 2007, 34, 737-749.
    • (2007) Func. Plant Biol. , vol.34 , pp. 737-749
    • de Pauw, M.A.1    Vidmar, J.J.2    Collins, J.3    Bennett, R.A.4    Deyholos, M.K.5
  • 80
    • 34447097462 scopus 로고    scopus 로고
    • Microarray analysis of flax (Linum usitatissimum L.) stems identifies transcripts enriched in fibre-bearing phloem tissues
    • Roach, M.J.; Deyholos, M.K. Microarray analysis of flax (Linum usitatissimum L.) stems identifies transcripts enriched in fibre-bearing phloem tissues. Mol. Genet. Genomics 2007, 278, 149-165.
    • (2007) Mol. Genet. Genomics , vol.278 , pp. 149-165
    • Roach, M.J.1    Deyholos, M.K.2
  • 81
    • 37549048671 scopus 로고    scopus 로고
    • Differential expression of genes involved in C1 metabolism and lignin biosynthesis in wooden core and bast tissues of fibre hemp (Cannabis sativa L.)
    • Van den Broeck, H.C.; Maliepaard, C.; Ebskam, M.J.M.; Toonen, M.A.J.; Koops, A.J. Differential expression of genes involved in C1 metabolism and lignin biosynthesis in wooden core and bast tissues of fibre hemp (Cannabis sativa L.). Plant Sci. 2008, 2, 205-220.
    • (2008) Plant Sci. , vol.2 , pp. 205-220
    • van den Broeck, H.C.1    Maliepaard, C.2    Ebskam, M.J.M.3    Toonen, M.A.J.4    Koops, A.J.5
  • 82
    • 44649191118 scopus 로고    scopus 로고
    • A flax fibre proteome: Identification of proteins enriched in bast fibres
    • Hotte, N.S.; Deyholos, M.K. A flax fibre proteome: Identification of proteins enriched in bast fibres. BMC Plant Biol. 2008, 8, 52.
    • (2008) BMC Plant Biol. , vol.8 , pp. 52
    • Hotte, N.S.1    Deyholos, M.K.2
  • 83
    • 49749083931 scopus 로고    scopus 로고
    • Microarray analysis of developing flax hypocotyls identifies novel transcripts correlated with specific stages of phloem fibre differentiation
    • Roach, M.J.; Deyholos, M.K. Microarray analysis of developing flax hypocotyls identifies novel transcripts correlated with specific stages of phloem fibre differentiation. Ann. Bot. 2008, 102, 317-330.
    • (2008) Ann. Bot. , vol.102 , pp. 317-330
    • Roach, M.J.1    Deyholos, M.K.2
  • 85
    • 84863758248 scopus 로고    scopus 로고
    • Analysis of 2.297 expressed sequence tags (ESTs) from a cDNA library of flax (Linum ustitatissimum L.) bark tissue
    • Long, S.H.; Deng, X.; Wang, Y.F.; Li, X.; Qiao, R.Q.; Qiu, C.S.; Guo, Y.; Hao, D.M.; Jia, W.Q.; Chen, X.B. Analysis of 2.297 expressed sequence tags (ESTs) from a cDNA library of flax (Linum ustitatissimum L.) bark tissue. Mol. Biol. Rep. 2012, 39, 6289-6296.
    • (2012) Mol. Biol. Rep. , vol.39 , pp. 6289-6296
    • Long, S.H.1    Deng, X.2    Wang, Y.F.3    Li, X.4    Qiao, R.Q.5    Qiu, C.S.6    Guo, Y.7    Hao, D.M.8    Jia, W.Q.9    Chen, X.B.10
  • 87
    • 84869097287 scopus 로고    scopus 로고
    • Identification and characterization of miRNAs and their potential targets in flax
    • Neutelings, G.; Fénart, S.; Lucau-Danila, A.; Hawkins, S. Identification and characterization of miRNAs and their potential targets in flax. J. Plant Physiol. 2012, 169, 1754-1766.
    • (2012) J. Plant Physiol. , vol.169 , pp. 1754-1766
    • Neutelings, G.1    Fénart, S.2    Lucau-Danila, A.3    Hawkins, S.4
  • 89
    • 84874793795 scopus 로고    scopus 로고
    • Identification of cell wall proteins in the flax (Linum usitatissimum) stem
    • Day, A.; Fénart, S.; Neutelings, G.; Hawkins, S.; Rolando, C.; Tokarski, C. Identification of cell wall proteins in the flax (Linum usitatissimum) stem. Proteomics 2013, 13, 812-825.
    • (2013) Proteomics , vol.13 , pp. 812-825
    • Day, A.1    Fénart, S.2    Neutelings, G.3    Hawkins, S.4    Rolando, C.5    Tokarski, C.6
  • 90
    • 84875605445 scopus 로고    scopus 로고
    • De novo assembly and characterization of transcriptome using Illumina paired-end sequencing and identification of CesA gene in ramie (Boehmeria nivea L. Gaud)
    • Liu, T.; Zhu, S.; Tang, Q.; Chen, P.; Yu, Y.; Tang, S. De novo assembly and characterization of transcriptome using Illumina paired-end sequencing and identification of CesA gene in ramie (Boehmeria nivea L. Gaud). BMC Genomics 2013, 14, 125.
    • (2013) BMC Genomics , vol.14 , pp. 125
    • Liu, T.1    Zhu, S.2    Tang, Q.3    Chen, P.4    Yu, Y.5    Tang, S.6
  • 91
    • 78650645121 scopus 로고    scopus 로고
    • Supramolecular self-assembled chaos: Polyphenolic lignin's barrier to cost-effective lignocellulosic biofuels
    • Achyuthan, K.E.; Achyuthan, A.M.; Adams, P.D.; Dirk, S.M.; Harper, J.C.; Simmons, B.A.; Singh A.K. Supramolecular self-assembled chaos: Polyphenolic lignin's barrier to cost-effective lignocellulosic biofuels. Molecules 2010, 15, 8641-8488.
    • (2010) Molecules , vol.15 , pp. 8461-8488
    • Achyuthan, K.E.1    Achyuthan, A.M.2    Adams, P.D.3    Dirk, S.M.4    Harper, J.C.5    Simmons, B.A.6    Singh, A.K.7
  • 92
    • 84877972304 scopus 로고    scopus 로고
    • Complete chemical analysis of carmagnola hemp hurds and structural features of its components
    • Gandolfi, S.; Ottolina, G.; Riva, S.; Predrocchi Fantoni, G.; Patel, I. Complete chemical analysis of carmagnola hemp hurds and structural features of its components. BioResources 2013, 8, 2641-2656.
    • (2013) BioResources , vol.8 , pp. 2641-2656
    • Gandolfi, S.1    Ottolina, G.2    Riva, S.3    Predrocchi Fantoni, G.4    Patel, I.5
  • 93
    • 84862189842 scopus 로고    scopus 로고
    • Structural characterization of wheat straw lignin as revealed by analytical pyrolysis, 2D-NMR, and reductive cleavage methods
    • Del Río, J.C.; Rencoret, J.; Prinsen, P.; Martinez, A.T.; Ralph, J.; Gutierrez, A. Structural characterization of wheat straw lignin as revealed by analytical pyrolysis, 2D-NMR, and reductive cleavage methods. J. Agric. Food Chem. 2012, 60, 5922-5935.
    • (2012) J. Agric. Food Chem. , vol.60 , pp. 5922-5935
    • del Río, J.C.1    Rencoret, J.2    Prinsen, P.3    Martinez, A.T.4    Ralph, J.5    Gutierrez, A.6
  • 94
    • 0041886402 scopus 로고    scopus 로고
    • Efficiency of lignin biosynthesis: A quantitative analysis
    • Amthor, J.S. Efficiency of lignin biosynthesis: A quantitative analysis. Ann. Bot. 2003, 91, 673-695.
    • (2003) Ann. Bot. , vol.91 , pp. 673-695
    • Amthor, J.S.1
  • 95
    • 0036934566 scopus 로고    scopus 로고
    • Genetic modification of lignin concentration affects fitness of perennial herbaceous plants
    • Casler, M.D.; Buxton, D.R.; Vogel, K.P. Genetic modification of lignin concentration affects fitness of perennial herbaceous plants. Theor. Appl. Genet. 2002, 104, 127-131.
    • (2002) Theor. Appl. Genet. , vol.104 , pp. 127-131
    • Casler, M.D.1    Buxton, D.R.2    Vogel, K.P.3
  • 97
    • 1242296765 scopus 로고    scopus 로고
    • The 4-coumarate:CoA ligase gene family in Arabidopsis thaliana comprises one rare, sinapate-activating and three commonly occurring isoenzymes
    • Hamberger, B.; Hahlbrock, K. The 4-coumarate:CoA ligase gene family in Arabidopsis thaliana comprises one rare, sinapate-activating and three commonly occurring isoenzymes. Proc. Natl. Acad. Sci. USA 2004, 101, 2209-2214.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 2209-2214
    • Hamberger, B.1    Hahlbrock, K.2
  • 98
    • 24344488486 scopus 로고    scopus 로고
    • Characterization in vitro and in vivo of the putative multigene 4-coumarate:CoA ligase network in Arabidopsis: Syringyl lignin and sinapate/sinapyl alcohol derivative formation
    • Costa, M.A.; Bedgar, D.L.; Moinuddin, S.G.; Kim, K.W.; Cardenas, C.L.; Cochrane, F.C.; Shockey, J.M.; Helms, G.L.; Amakura, Y.; Takahashi, H.; et al. Characterization in vitro and in vivo of the putative multigene 4-coumarate:CoA ligase network in Arabidopsis: Syringyl lignin and sinapate/sinapyl alcohol derivative formation. Phytochemistry 2005, 66, 2072-2091.
    • (2005) Phytochemistry , vol.66 , pp. 2072-2091
    • Costa, M.A.1    Bedgar, D.L.2    Moinuddin, S.G.3    Kim, K.W.4    Cardenas, C.L.5    Cochrane, F.C.6    Shockey, J.M.7    Helms, G.L.8    Amakura, Y.9    Takahashi, H.10
  • 99
    • 33747844541 scopus 로고    scopus 로고
    • Distinct roles of cinnamate 4-hydroxylase genes in Populus
    • Lu, S.; Zhou, Y.; Li, L.; Chiang, V.L. Distinct roles of cinnamate 4-hydroxylase genes in Populus. Plant Cell Physiol. 2006, 47, 905-914.
    • (2006) Plant Cell Physiol. , vol.47 , pp. 905-914
    • Lu, S.1    Zhou, Y.2    Li, L.3    Chiang, V.L.4
  • 100
    • 33748944013 scopus 로고    scopus 로고
    • Multiple cis-regulatory elements regulate distinct and complex patterns of developmental and wound-induced expression of Arabidopsis thaliana 4CL gene family members
    • Soltani, B.M.; Ehlting, J.; Hamberger, B.; Douglas, C.J. Multiple cis-regulatory elements regulate distinct and complex patterns of developmental and wound-induced expression of Arabidopsis thaliana 4CL gene family members. Planta 2006, 224, 1226-1238.
    • (2006) Planta , vol.224 , pp. 1226-1238
    • Soltani, B.M.1    Ehlting, J.2    Hamberger, B.3    Douglas, C.J.4
  • 101
    • 77955666376 scopus 로고    scopus 로고
    • Functional analysis of the Arabidopsis PAL gene family in plant growth, development, and response to environmental stress
    • Huang, J.; Gu, M.; Lai, Z.; Fan, B.; Shi, K.; Zhou, Y.H.; Yu, J.Q.; Chen, Z. Functional analysis of the Arabidopsis PAL gene family in plant growth, development, and response to environmental stress. Plant Physiol. 2010, 153, 1526-1538.
    • (2010) Plant Physiol. , vol.153 , pp. 1526-1538
    • Huang, J.1    Gu, M.2    Lai, Z.3    Fan, B.4    Shi, K.5    Zhou, Y.H.6    Yu, J.Q.7    Chen, Z.8
  • 102
    • 0032725627 scopus 로고    scopus 로고
    • Transgene-mediated and elicitor-induced perturbation of metabolic channeling at the entry point into the phenylpropanoid pathway
    • Rasmussen, S.; Dixon, R.A. Transgene-mediated and elicitor-induced perturbation of metabolic channeling at the entry point into the phenylpropanoid pathway. Plant Cell 1999, 11, 1537-1552.
    • (1999) Plant Cell , vol.11 , pp. 1537-1552
    • Rasmussen, S.1    Dixon, R.A.2
  • 103
    • 11144265587 scopus 로고    scopus 로고
    • Colocalization of L-phenylalanine ammonia-lyase and cinnamate 4-hydroxylase for metabolic channeling in phenylpropanoid biosynthesis
    • Achnine, L.; Blancaflor, E.B.; Rasmussen, S.; Dixon, R.A. Colocalization of L-phenylalanine ammonia-lyase and cinnamate 4-hydroxylase for metabolic channeling in phenylpropanoid biosynthesis. Plant Cell 2004, 16, 3098-3109.
    • (2004) Plant Cell , vol.16 , pp. 3098-3109
    • Achnine, L.1    Blancaflor, E.B.2    Rasmussen, S.3    Dixon, R.A.4
  • 105
    • 0034967467 scopus 로고    scopus 로고
    • Cloning and characterization of irregular xylem4 (irx4): A severely lignin-deficient mutant of Arabidopsis
    • Jones, L.; Ennos, A.R.; Turner, S.R. Cloning and characterization of irregular xylem4 (irx4): A severely lignin-deficient mutant of Arabidopsis. Plant J. 2001, 26, 205-216.
    • (2001) Plant J. , vol.26 , pp. 205-216
    • Jones, L.1    Ennos, A.R.2    Turner, S.R.3
  • 106
    • 37849044667 scopus 로고    scopus 로고
    • Downregulation of cinnamoyl-coenzyme A reductase in poplar: Multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure
    • Leplé, J.C.; Dauwe, R.; Morreel, K.; Storme, V.; Lapierre, C.; Pollet, B.; Naumann, A.; Kang, K.Y.; Kim, H.; Ruel, K.; et al. Downregulation of cinnamoyl-coenzyme A reductase in poplar: Multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure. Plant Cell 2007, 19, 3669-3691.
    • (2007) Plant Cell , vol.19 , pp. 3669-3691
    • Leplé, J.C.1    Dauwe, R.2    Morreel, K.3    Storme, V.4    Lapierre, C.5    Pollet, B.6    Naumann, A.7    Kang, K.Y.8    Kim, H.9    Ruel, K.10
  • 108
    • 79952838136 scopus 로고    scopus 로고
    • ABC transporters coordinately expressed during lignification of Arabidopsis stems include a set of ABCBs associated with auxin transport
    • Kaneda, M.; Schuetz, M.; Lin, B.S.; Chanis, C.; Hamberger, B.; Western, T.L.; Ehlting, J.; Samuels, A.L. ABC transporters coordinately expressed during lignification of Arabidopsis stems include a set of ABCBs associated with auxin transport. J. Exp. Bot. 2011, 62, 2063-2077.
    • (2011) J. Exp. Bot. , vol.62 , pp. 2063-2077
    • Kaneda, M.1    Schuetz, M.2    Lin, B.S.3    Chanis, C.4    Hamberger, B.5    Western, T.L.6    Ehlting, J.7    Samuels, A.L.8
  • 110
    • 84859115924 scopus 로고    scopus 로고
    • Deciphering the enigma of lignification: Precursor transport, oxidation, and the topochemistry of lignin assembly
    • Liu, C.J. Deciphering the enigma of lignification: Precursor transport, oxidation, and the topochemistry of lignin assembly. Mol. Plant 2012, 5, 304-317.
    • (2012) Mol. Plant , vol.5 , pp. 304-317
    • Liu, C.J.1
  • 111
    • 80052329245 scopus 로고    scopus 로고
    • Lignin variability in plant cell walls: Contribution of new models
    • Neutelings, G. Lignin variability in plant cell walls: Contribution of new models. Plant Sci. 2011, 181, 379-386.
    • (2011) Plant Sci. , vol.181 , pp. 379-386
    • Neutelings, G.1
  • 113
    • 44649117451 scopus 로고    scopus 로고
    • The effects of hemicelluloses and lignin removal on water uptake behavior of hemp fibers
    • Pejic, B.M.; Kostic, M.M.; Skundric, P.D.; Praskalo, J.Z. The effects of hemicelluloses and lignin removal on water uptake behavior of hemp fibers. Bioresour. Technol. 2008, 99, 7152-7179.
    • (2008) Bioresour. Technol. , vol.99 , pp. 7152-7179
    • Pejic, B.M.1    Kostic, M.M.2    Skundric, P.D.3    Praskalo, J.Z.4
  • 117
    • 33746720905 scopus 로고    scopus 로고
    • Mechanical behavior of cellulose microfibrils in tension wood, in relation with maturation stress generation
    • Clair, B.; Alméras, T.; Yamamoto, H.; Okuyama, T.; Sugiyama, J. Mechanical behavior of cellulose microfibrils in tension wood, in relation with maturation stress generation. Biophys. J. 2006, 91, 1128-1135.
    • (2006) Biophys. J. , vol.91 , pp. 1128-1135
    • Clair, B.1    Alméras, T.2    Yamamoto, H.3    Okuyama, T.4    Sugiyama, J.5
  • 118
    • 54249146015 scopus 로고    scopus 로고
    • Xyloglucan: The molecular muscle of trees
    • Mellerowicz, E.J.; Immerzeel, P.; Hayashi, T. Xyloglucan: The molecular muscle of trees. Ann. Bot. 2008, 102, 659-665.
    • (2008) Ann. Bot. , vol.102 , pp. 659-665
    • Mellerowicz, E.J.1    Immerzeel, P.2    Hayashi, T.3
  • 120
    • 84855894789 scopus 로고    scopus 로고
    • Tensional stress generation in gelatinous fibres: A review and possible mechanism based on cell-wall structure and composition
    • Mellerowicz, E.J.; Gorshkova, T.A. Tensional stress generation in gelatinous fibres: A review and possible mechanism based on cell-wall structure and composition. J. Exp. Bot. 2012, 63, 551-565.
    • (2012) J. Exp. Bot. , vol.63 , pp. 551-565
    • Mellerowicz, E.J.1    Gorshkova, T.A.2
  • 124
    • 29444441980 scopus 로고    scopus 로고
    • Secondary cell-wall assembly in flax phloem fibres: Role of galactans
    • Gorshkova, T.; Morvan, C. Secondary cell-wall assembly in flax phloem fibres: Role of galactans. Planta 2006, 223, 149-158.
    • (2006) Planta , vol.223 , pp. 149-158
    • Gorshkova, T.1    Morvan, C.2
  • 125
    • 55949090811 scopus 로고    scopus 로고
    • Homofusion of Golgi secretory vesicles in flax phloem fibers during formation of the gelatinous secondary cell wall
    • Salnikov, V.V.; Ageeva, M.V.; Gorshkova, T.A. Homofusion of Golgi secretory vesicles in flax phloem fibers during formation of the gelatinous secondary cell wall. Protoplasma 2008, 233, 269-273.
    • (2008) Protoplasma , vol.233 , pp. 269-273
    • Salnikov, V.V.1    Ageeva, M.V.2    Gorshkova, T.A.3
  • 127
    • 84858718127 scopus 로고    scopus 로고
    • Green systems biology-From single genomes, proteomes and metabolomes to ecosystems research and biotechnology
    • Weckwerth, W. Green systems biology-From single genomes, proteomes and metabolomes to ecosystems research and biotechnology. J. Proteomics 2011, 75, 284-305.
    • (2011) J. Proteomics , vol.75 , pp. 284-305
    • Weckwerth, W.1
  • 128
    • 78650572031 scopus 로고    scopus 로고
    • Paintomics: A web based tool for the joint visualization of transcriptomics and metabolomics data
    • García-Alcalde, F.; García-López, F.; Dopazo, J.; Conesa, A. Paintomics: A web based tool for the joint visualization of transcriptomics and metabolomics data. Bioinformatics 2011, 27, 137-139.
    • (2011) Bioinformatics , vol.27 , pp. 137-139
    • García-Alcalde, F.1    García-López, F.2    Dopazo, J.3    Conesa, A.4
  • 131
    • 84862802794 scopus 로고    scopus 로고
    • COVAIN: A toolbox for uni-and multivariate statistics, time-series and correlation network analysis and inverse estimation of the differential Jacobian from metabolomics covariance data
    • Sun, X.; Weckwerth, W. COVAIN: A toolbox for uni-and multivariate statistics, time-series and correlation network analysis and inverse estimation of the differential Jacobian from metabolomics covariance data. Metabolomics 2012, 8, 81-93.
    • (2012) Metabolomics , vol.8 , pp. 81-93
    • Sun, X.1    Weckwerth, W.2
  • 132
    • 84878437630 scopus 로고    scopus 로고
    • Recent progress in the development of metabolome databases for plant systems biology
    • Fukushima, A.; Kusano, M. Recent progress in the development of metabolome databases for plant systems biology. Front. Plant Sci. 2013, 4, 73.
    • (2013) Front. Plant Sci. , vol.4 , pp. 73
    • Fukushima, A.1    Kusano, M.2
  • 133
    • 84873505176 scopus 로고    scopus 로고
    • Maximizing the information content of experiments in systems biology
    • Liepe, J.; Filippi, S.; Komorowski, M.; Stumpf, M.P. Maximizing the information content of experiments in systems biology. PLoS Comput. Biol. 2013, 9, e1002888.
    • (2013) PLoS Comput. Biol. , vol.9
    • Liepe, J.1    Filippi, S.2    Komorowski, M.3    Stumpf, M.P.4
  • 134
    • 79959307141 scopus 로고    scopus 로고
    • Cloning and expression analysis of kenaf (Hibiscus cannabinus L.) major lignin and cellulose biosynthesis gene sequences and polymer quantification during plant development
    • Chiaiese, P.; Ruotolo, G.; di Matteo, A.; de Santo Virzo, A.; de Marco, A.; Filippone, E. Cloning and expression analysis of kenaf (Hibiscus cannabinus L.) major lignin and cellulose biosynthesis gene sequences and polymer quantification during plant development. Ind. Crops Prod. 2011, 34, 1072-1078.
    • (2011) Ind. Crops Prod. , vol.34 , pp. 1072-1078
    • Chiaiese, P.1    Ruotolo, G.2    di Matteo, A.3    de Santo Virzo, A.4    de Marco, A.5    Filippone, E.6
  • 135
    • 84866791830 scopus 로고    scopus 로고
    • Differential expression of kenaf phenylalanine ammonia-lyase (PAL) ortholog during developmental stages and in response to abiotic stresses
    • Jeong, M.-J.; Choi, B.S.; Bae, D.W.; Shin, S.C.; Park, S.U.; Lim, H.-S.; Kim, J.; Kim, J.B.; Cho, B.-K.; Bae, H. Differential expression of kenaf phenylalanine ammonia-lyase (PAL) ortholog during developmental stages and in response to abiotic stresses. Plant Omics 2012, 4, 392-399.
    • (2012) Plant Omics , vol.4 , pp. 392-399
    • Jeong, M.-J.1    Choi, B.S.2    Bae, D.W.3    Shin, S.C.4    Park, S.U.5    Lim, H.-S.6    Kim, J.7    Kim, J.B.8    Cho, B.-K.9    Bae, H.10
  • 136
    • 84861926961 scopus 로고    scopus 로고
    • Transcriptional analysis of hydroxycinnamoyl transferase (HCT) in various tissues of Hibiscus cannabinus in response to abiotic stress conditions
    • Chowdhury, E.M.D.; Choi, B.S.; Park, S.U.; Lim, H.-S.; Bae, H. Transcriptional analysis of hydroxycinnamoyl transferase (HCT) in various tissues of Hibiscus cannabinus in response to abiotic stress conditions. Plant Omics 2012, 5, 305-313.
    • (2012) Plant Omics , vol.5 , pp. 305-313
    • Chowdhury, E.M.D.1    Choi, B.S.2    Park, S.U.3    Lim, H.-S.4    Bae, H.5
  • 137
    • 84870410624 scopus 로고    scopus 로고
    • Genome wide SNP discovery in flax through next generation sequencing of reduced representation libraries
    • Kumar, S.; You, F.M.; Cloutier, S. Genome wide SNP discovery in flax through next generation sequencing of reduced representation libraries. BMC Genomics 2012, 13, 684.
    • (2012) BMC Genomics , vol.13 , pp. 684
    • Kumar, S.1    You, F.M.2    Cloutier, S.3
  • 139
    • 84858612669 scopus 로고    scopus 로고
    • Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    • Puzey, J.R.; Karger, A.; Axtell, M.; Kramer, E.M. Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets. PLoS One 2012, 7, e33034.
    • (2012) PLoS One , vol.7
    • Puzey, J.R.1    Karger, A.2    Axtell, M.3    Kramer, E.M.4
  • 140
    • 84870272326 scopus 로고    scopus 로고
    • Characterization of microRNAs expressed during secondary wall biosynthesis in Acacia mangium
    • Ong, S.S.; Wickneswari, R. Characterization of microRNAs expressed during secondary wall biosynthesis in Acacia mangium. PLoS One 2012, 7, e49662.
    • (2012) PLoS One , vol.7
    • Ong, S.S.1    Wickneswari, R.2
  • 141
    • 27744471144 scopus 로고    scopus 로고
    • Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis
    • Lu, S.; Sun, Y.H.; Shi, R.; Clark, C.; Li, L.; Chiang, V.L. Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell 2005, 17, 2186-2203.
    • (2005) Plant Cell , vol.17 , pp. 2186-2203
    • Lu, S.1    Sun, Y.H.2    Shi, R.3    Clark, C.4    Li, L.5    Chiang, V.L.6
  • 143
    • 67650851564 scopus 로고    scopus 로고
    • The role of xylem class III peroxidases in lignification
    • Marjamaa, K.; Kukkola, E.M.; Fagerstedt, K.V. The role of xylem class III peroxidases in lignification. J. Exp. Bot. 2009, 60, 367-376.
    • (2009) J. Exp. Bot. , vol.60 , pp. 367-376
    • Marjamaa, K.1    Kukkola, E.M.2    Fagerstedt, K.V.3
  • 144
    • 43549117046 scopus 로고    scopus 로고
    • Improvement of biomass through lignin modification
    • Li, X.; Weng, J.K.; Chapple, C. Improvement of biomass through lignin modification. Plant J. 2008, 54, 569-581.
    • (2008) Plant J. , vol.54 , pp. 569-581
    • Li, X.1    Weng, J.K.2    Chapple, C.3
  • 145
    • 0142035247 scopus 로고    scopus 로고
    • Genome-wide characterization of the lignification toolbox in Arabidopsis
    • Raes, J.; Rohde, A.; Christensen, J.H.; Van de Peer, Y.; Boerjan, W. Genome-wide characterization of the lignification toolbox in Arabidopsis. Plant Physiol. 2003, 133, 1051-1071.
    • (2003) Plant Physiol. , vol.133 , pp. 1051-1071
    • Raes, J.1    Rohde, A.2    Christensen, J.H.3    van de Peer, Y.4    Boerjan, W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.