Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis

Plant Molecular Biology

Volumn 78, Issue 4-5, 2012, Pages 489-501

  Kim, Won Chan ^a   Ko, Jae Heung ^b   Han, Kyung Hwan ^a,c  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b Kyung Hee University   (South Korea)

^c Chonnam National University   (South Korea)

Author keywords

cis acting motif; MYB46; Secondary wall biosynthesis; Transcription factor

Indexed keywords

ARABIDOPSIS PROTEIN; MYB46 PROTEIN, ARABIDOPSIS; TRANSCRIPTION FACTOR; ZINC FINGER PROTEIN;

ARABIDOPSIS; ARTICLE; BINDING SITE; CELL WALL; GEL MOBILITY SHIFT ASSAY; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PROMOTER REGION; PROTEIN MOTIF; REGULATORY SEQUENCE;

AMINO ACID MOTIFS; ARABIDOPSIS; ARABIDOPSIS PROTEINS; BINDING SITES; CELL WALL; ELECTROPHORETIC MOBILITY SHIFT ASSAY; GENE EXPRESSION REGULATION, PLANT; PROMOTER REGIONS, GENETIC; REGULATORY SEQUENCES, NUCLEIC ACID; TRANSCRIPTION FACTORS; ZINC FINGERS;

ARABIDOPSIS THALIANA;

EID: 84856880107     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-012-9880-7     Document Type: Article

References (34)

1. Aoyama T, Chua NH (1997) A glucocorticoid-mediated transcriptional induction system in transgenic plants. Plant J 11(3): 605-612.
2. Brown DM, Zeef LA, Ellis J, Goodacre R, Turner SR (2005) Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse genetics. Plant Cell 17(8): 2281-2295. doi: 10. 1105/tpc. 105. 031542.
3. Brown D, Wightman R, Zhang Z, Gomez LD, Atanassov I, Bukowski JP, Tryfona T, McQueen-Mason SJ, Dupree P, Turner S (2011) Arabidopsis genes IRREGULAR XYLEM (IRX15) and IRX15L encode DUF579-containing proteins that are essential for normal xylan deposition in the secondary cell wall. Plant J 66(3): 401-413. doi: 10. 1111/j. 1365-313X. 2011. 04501. x.
4. Fukuda H (1997) Tracheary element differentiation. Plant Cell 9(7): 1147-1156. doi: 10. 1105/tpc. 9. 7. 1147.
5. Han KH, Ko JH, Yang SH (2007) Optimizing lignocellulosic feedstock for improved biofuel productivity and processing. Biofpr 1(2): 135-146. doi: 10. 1002/bbb. 14.
6. Hatton D, Sablowski R, Yung MH, Smith C, Schuch W, Bevan M (1995) Two classes of cis sequences contribute to tissue-specific expression of a PAL2 promoter in transgenic tobacco. Plant J 7(6): 859-876. doi: 10. 1046/j. 1365-313X. 1995. 07060859. x.
7. Jensen JK, Kim H, Cocuron JC, Orler R, Ralph J, Wilkerson CG (2010) The DUF579 domain containing proteins IRX15 and IRX15-L affect xylan synthesis in Arabidopsis. Plant J 66(3): 387-400. doi: 10. 1111/j. 1365-313X. 2010. 04475. x.
8. Kaneda M, Rensing K, Samuels L (2010) Secondary cell wall deposition in developing secondary xylem of poplar. J Integr Plant Biol 52(2): 234-243. doi: 10. 1111/j. 1744-7909. 2010. 00925. x.
9. Ko JH, Yang SH, Park AH, Lerouxel O, Han KH (2007) ANAC012, a member of the plant-specific NAC transcription factor family, negatively regulates xylary fiber development in Arabidopsis thaliana. Plant J 50(6): 1035-1048. doi: 10. 1111/j. 1365-313X. 2007. 03109. x.
10. Ko JH, Kim WC, Han KH (2009) Ectopic expression of MYB46 identifies transcriptional regulatory genes involved in secondary wall biosynthesis in Arabidopsis. Plant J 60(4): 649-665. doi: 10. 1111/j. 1365-313X. 2009. 03989. x.
11. Lerouxel O, Cavalier DM, Liepman AH, Keegstra K (2006) Biosynthesis of plant cell wall polysaccharides: a complex process. Curr Opin Plant Biol 9(6): 621-630. doi: 10. 1016/j. pbi. 2006. 09. 009.
12. Patzlaff A, McInnis S, Courtenay A, Surman C, Newman LJ, Smith C, Bevan MW, Mansfield S, Whetten RW, Sederoff RR, Campbell MM (2003) Characterisation of a pine MYB that regulates lignification. Plant J 36(6): 743-754. doi: 10. 1046/j. 1365-313X. 2003. 01916. x.
13. Peña MJ, Zhong R, Zhou GK, Richardson EA, O'Neill MA, Darvill AG, York WS, Ye ZH (2007) Arabidopsis irregular xylem8 and irregular xylem9: implications for the complexity of glucuronoxylan biosynthesis. Plant Cell 19(2): 549-563. doi: 10. 1105/tpc. 106. 049320.
14. Pesquet E, Korolev AV, Calder G, Lloyd CW (2010) The microtubule-associated protein AtMAP70-5 Regulates secondary wall patterning in Arabidopsis wood cells. Curr Biol 20(8): 744-749. doi: 10. 1016/j. cub. 2010. 02. 057.
15. Raes J, Rohde A, Christensen JH, van de Peer Y, Boerjan W (2003) Genome-wide characterization of the lignification toolbox in Arabidopsis. Plant Physiol 133(3): 1051-1071. doi: 10. 1104/pp. 103. 026484.
16. Rahantamalala A, Rech P, Martinez Y, Chaubet-Gigot N, Grima-Pettenati J, Pacquit V (2010) Coordinated transcriptional regulation of two key genes in the lignin branch pathway-CAD and CCR-is mediated through MYB- binding sites. BMC Plant Biol 10: 130-141. doi: 10. 1186/1471-2229-10-130.
17. Rammírez V, Agorio A, Coego A, García-Andrade J, Hernández MJ, Balaguer B, Ouwerkerk PB, Zarra I, Vera P (2011) MYB46 modulates disease susceptibility to Botrytis cinerea in Arabidopsis. Plant Physiol 155(4): 1920-1935. doi: 10. 1104/pp. 110. 171843.
18. Romero I, Fuertes A, Benito MJ, Malpica JM, Leyva A, Paz-Ares J (1998) More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14(3): 273-284. doi: 10. 1046/j. 1365-313X. 1998. 00113. x.
19. Sheen J (2001) Signal transduction in maize and Arabidopsis mesophyll protoplasts. Plant Physiol 127(4): 1466-1475. doi: 10. 1104/pp. 010820.
20. Shi R, Sun YH, Li Q, Heber S, Sederoff R, Chiang VL (2010) Towards a systems approach for lignin biosynthesis in Populus trichocarpa: transcript abundance and specificity of the monolignol biosynthetic genes. Plant Cell Physiol 51(1): 144-163. doi: 10. 1093/pcp/pcp175.
21. Skriver K, Olsen FL, Rogers JC, Mundy J (1991) Cis-acting DNA elements responsive to gibberellin and its antagonist abscisic acid. Proc Natl Acad Sci USA 88(16): 7266-7270. doi: 10. 1073/pnas. 88. 16. 7266.
22. Somerville C (2006) Cellulose synthesis in higher plants. Annu Rev Cell Dev Biol 22: 53-78. doi: 10. 1146/annurev. cellbio. 22. 022206. 160206.
23. Taylor NG, Howells RM, Huttly AK, Vickers K, Turner SR (2003) Interactions among three distinct CesA proteins essential for cellulose synthesis. Proc Natl Acad Sci USA 100(3): 1450-1455. doi: 10. 1073/pnas. 0337628100.
24. Walker JC, Howard EA, Dennis ES, Peacock WJ (1987) DNA sequences required for anaerobic expression of the maize alcohol dehydrogenase 1 gene. Proc Natl Acad Sci USA 84(19): 6624-6628. doi: 10. 3109/00016357. 2011. 568963.
25. Wang D, Guo Y, Wu C, Yang G, Li Y, Zheng C (2008) Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice. BMC Genomics 9: 44-63.
26. Winzell A, Aspeborg H, Wang Y, Ezcurra I (2010) Conserved CA-rich motifs in gene promoters of Pt x tMYB021-responsive secondary cell wall carbohydrate-active enzymes in Populus. Biochem Biophys Res Commun 394(3): 848-853. doi: 10. 1016/j. bbrc. 2010. 03. 101.
27. Wu AM, Hörnblad E, Voxeur A, Gerber L, Rihouey C, Lerouge P, Marchant A (2010) Analysis of the Arabidopsis IRX9/IRX9-L and IRX14/IRX14-L pairs of glycosyltransferase genes reveals critical contributions to biosynthesis of the hemicellulose glucuronoxylan. Plant Physiol 153(2): 542-554. doi: 10. 1104/pp. 110. 154971.
28. Ye ZH (2002) Vascular tissue differentiation and pattern formation in plants. Annu Rev Plant Biol 53: 183-202. doi: 10. 1146/annurev. arplant. 53. 100301. 135245.
29. Yi SY, Liu J (2009) Combinatorial interactions of two cis-acting elements, AT-rich regions and HSEs, in the expression of tomato Lehsp23. 8 upon heat and non-heat stresses. J Plant Biol 52(6): 560-568. doi: 10. 1007/s12374-009-9072-4.
30. Yoo SD, Cho YH, Sheen J (2007) Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat Protoc 2(7): 1565-1572. doi: 10. 1038/nprot. 2007. 199.
31. Zhong R, Ye ZH (2007) Regulation of cell wall biosynthesis. Curr Opin Plant Biol 10(6): 564-572. doi: 10. 1016/j. pbi. 2007. 09. 001.
32. Zhong R, Demura T, Ye ZH (2006) SND1, a NAC domain transcription factor, is a key regulator of secondary wall synthesis in fibers of Arabidopsis. Plant Cell 18(11): 3158-3170. doi: 10. 1105/tpc. 106. 047399.
33. Zhong R, Richardson EA, Ye ZH (2007) The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis. Plant Cell 19(9): 2776-2792. doi: 10. 1105/tpc. 107. 053678.
34. Zhong R, Lee C, Ye ZH (2010) Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis. Mol Plant 3(6): 1087-1103. doi: 10. 1093/mp/ssq062.