Molecular and analysis of a phenylalanine ammonia-lyase gene (LrPAL2) from Lycoris radiata

Molecular Biology Reports

Volumn 40, Issue 3, 2013, Pages 2293-2300

  Jiang, Yumei ^a   Xia, Bing ^a   Liang, Lijian ^a   Li, Xiaodan ^a   Xu, Sheng ^a   Peng, Feng ^a   Wang, Ren ^a  

^a INSTITUTE OF BOTANY   (China)

Author keywords

Expression; Lycoris radiata; Molecular analysis; Phenylalanine ammonia lyase; Promoter

Indexed keywords

AMINO ACID; CCAAT BINDING FACTOR; CIS ACTING ELEMENT; COMPLEMENTARY DNA; G BOX BINDING FACTOR; NUCLEIC ACID; OLIGONUCLEOTIDE; PHENYLALANINE AMMONIA LYASE; TATA BINDING PROTEIN;

ARTICLE; BLOOMING; CONTROLLED STUDY; DEGENERATE OLIGONUCLEOTIDE PRIMER POLYMERASE CHAIN REACTION; DNA FLANKING REGION; EXON; GENE AMPLIFICATION; GENE EXPRESSION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC CODE; INTRON; LRPAL1 GENE; LRPAL2 GENE; LYCORIS; LYCORIS RADIATA; MOLECULAR CLONING; NONHUMAN; PETAL; PLANT BULB; PLANT DEVELOPMENT; PLANT GENE; PLANT LEAF; POLYMERASE CHAIN REACTION; PROTEIN ANALYSIS; SELF FORMED ADAPTOR POLYMERASE CHAIN REACTION; SPROUTING;

5' FLANKING REGION; BASE SEQUENCE; CLONING, MOLECULAR; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENOME, PLANT; LYCORIS; MOLECULAR SEQUENCE DATA; PHENYLALANINE AMMONIA-LYASE; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

LYCORIS RADIATA;

EID: 84878380058     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-012-2310-8     Document Type: Article

References (40)

1. Weisshaar B, Jenkins GI (1998) Phenylpropanoid biosynthesis and its regulation. Curr Opin Plant Biol 1:251-257
2. Liu RR, Xu SH, Li JL, Hu YL, Lin ZP (2006) Expression profile of a PAL gene from Astragalus membranaceus var. Mongholicus and its crucial role in flux into flavonoid biosynthesis. Plant Cell Rep 25:705-710
3. Chai YR, Li JN, Chen L (2007) Molecular cloning of two genes encoding cinnamate 4-hydroxylase (C4H) from oilseed rape (Brassica napus). J Biochem Mol Biol 40:247-260
4. Barber MS, Mitchell HJ (1997) Regulation of phenylpropanoid metabolism in relation to lignin biosynthesis in plants. Int Rev Cytol 172:243-293
5. Harakava R (2005) Genes encoding enzymes of the lignin biosynthesis pathway in Eucalyptus. Genet Mol Biol 28:601-607
6. Dixon RA, Paiva NL (1995) Stress-induced phenylpropanoid metabolism. Plant Cell 7:1085-1097
7. MacDonald MJ, D'Cunha GB (2007) A modern view of phenylalanine ammonia lyase. Biochem Cell Biol 85:273-282
8. Hahlbrock K, Scheel D (1989) Physiology and molecular biology of phenylpropanoid metabolism. Annu Rev Plant Physiol Plant Mol Biol 40:347-369
9. Minami E, Ozeki Y, Matsuoka M, Koiruka N, Tanaka Y (1989) Structure and some characterization of the gene for phenylalanine ammonia-lyase from rice plants. Eur J Biochem 185:19-25
10. Gibertia S, Berteab CM, Narayanab R, Maffeib ME, Forlania G (2012) Two phenylalanine ammonia lyase isoforms are involved in the elicitor-induced response of rice to the fungal pathogen Magnaporthe oryzae. J Plant Physiol 169(3):249-254
11. Lois R, Dietrich A, Hahlbrock K, Schulz W (1989) A phenylalanine ammonia-lyase gene from parsley: structure, regulation and identification of elicitor and light responsive cis-acting elements. EMBO J 8:1641-1648
12. Wanner LA, Li G, Ware D, Somssich IE, Davis KR (1995) The phenylalanine ammonialyase gene family in Arabidopsis thaliana. Plant Mol Biol 27:327-338
13. Cochrane FC, Davin LB, Lewis NG (2004) The Arabidopsis phenylalanine ammonia lyase gene family: kinetic characterization of the four PAL isoforms. Phytochemistry 65:1557-1564
14. Kumar A, Ellis BE (2001) The phenylalanine ammonia-lyase gene family in raspberry: structure, expression, and evolution. Plant Physiol 127:230-239
15. Hsieh LS, Yeh CS, Pan HC, Cheng CY, Yang CC, Lee PD (2010) Cloning and expression of a phenylalanine ammonia-lyase gene (BoPAL2) from Bambusa oldhamii in Escherichia coli and Pichia pastoris. Protein Expr Purif 71:224-230
16. Hsieh LS, Hsieh YL, Yeh CS, Cheng CY, Yang CC, Lee PD (2011) Molecular characterization of a phenylalanine ammonia-lyase gene (BoPAL1) from Bambusa oldhamii. Mol Biol Rep 38:283-290
17. Weitzel C, Petersen M (2010) Enzymes of phenylpropanoid metabolism in the important medicinal plant Melissa officinalis L. Planta 232:731-742
18. Hu GS, Jia JM, Hur YJ, Chung YS, Lee JH, Yun DJ, Chung WS, Yi GH, Kim TH, Kim DH (2011) Molecular characterization of phenylalanine ammonia lyase gene from Cistanche deserticola. Mol Biol Rep 38(6):3741-3750
19. Terauchi R, Kahl G (2000) Rapid isolation of promoter sequences by TAIL-PCR: the 50-flanking regions of Pal and Pgi genes from yams (Dioscorea). Mol Gen Genet 263:554-560
20. Song J, Wang Z (2009) Molecular cloning, expression and characterization of a phenylalanine ammonia-lyase gene (SmPAL1) from Salvia miltiorrhiza. Mol Biol Rep 36:939-952
21. Lee SW, Robb EJ, Nazar RN (1992) Truncated phenylalanine ammonia-lyase expression in tomato (Lycopersicon esculentum). J Biol Chem 267:11824-11830
22. Guo J, Wang MH (2009) Characterization of the phenylalanine ammonia-lyase gene (SlPAL5) from tomato (Solanum lycopersicum L.). Mol Biol Rep 36:1579-1585
23. Shang QM, Li L, Dong CJ (2012) Multiple tandem duplication of the phenylalanine ammonia-lyase genes in Cucumis sativus L. Planta. doi: 10.1007/s00425-012-1659-1
24. Joos HJ, Hahlbrock K (1992) Phenylalanine ammonia-lyase in potato (Solanum tuberosum L.). Eur J Biochem 204:621-629
25. Singh A, Selvi MT, Sharma R (1999) Sun light-induced anthocyanin pigmentation in maize vegetative tissues. J Exp Bot 50:1619-1625
26. Wen PF, Chen JY, Wan SB, Kong WF, Zhang P, Wang W, Zhan JC, Pan QH, Huang WD (2008) Salicylic acid activates phenylalanine ammonia-lyase in grape berry in response to high temperature stress. Plant Growth Regul 55:1-10
27. Jiang YM, Xia N, Li XD, Shen WB, Liang LJ, Wang CY, Wang R, Peng F, Xia B (2011) Molecular cloning and characterization of a phenylalanine ammonia-lyase gene (LrPAL) from Lycoris radiata. Mol Biol Rep 38:1935-1940
28. Campos-Vargas R, Nonogaki H, Suslow T, Saltveit ME (2005) Heat shock treatments delay the increase in wound induced phenylalanine ammonia-ammonia-lyase activity by altering its expression, not its induction in Romaine lettuce (Lactuca sativa) tissue. Physiol Plant 123:82-91
29. Pombo MA, Martineza GA, Civello PM (2011) Cloning of FaPAL6 gene from strawberry fruit and characterization of its expression and enzymatic activity in two cultivars with different anthocyanin accumulation. Plant Sci 181:111-118
30. Eichhorn J, Takada T, Kita Y, Zenk MH (1998) Biosynthesis of the Amaryllidaceae alkaloid galanthamine. Phytochemistry 49:1037-1047
31. Liang X, Dron M, Cramer CL, Dixon RA, Lamb CJ (1989) Differential regulation of phenylalanine ammonia-lyase genes during plant development and by environmental cues. J Biol Chem 264:14486-14492
32. Rohde A, Morreel K, Ralph J, Goeminne G, Hostyn V, De Rycke R, Kushnir S, Van Doorsselaere J, Joseleau JP, Vuylsteke M, Van Driessche G, Van Beeumen J, Messens E, Boerjan W (2004) Molecular phenotyping of the pal1 and pal2 mutants of Arabidopsis thaliana reveals far-reaching consequences on phenylpropanoid, amino acid, and carbohydrate metabolism. Plant Cell 16:2749-2771
33. Olsen KM, Lea US, Slimestad R, Verheul M, Lillo C (2008) Differential expression of four Arabidopsis PAL genes; PAL1 and PAL2 have functional specialization in abiotic environmental-triggered flavonoid synthesis. J Plant Physiol 165:1491-1499
34. Wang SM, He J, Cui ZL, Li SP (2007) Self-formed adaptor PCR: a simple and efficient method for chromosome walking. Appl Environ Microb 73(15):5048-5051
35. -ΔΔCT method. Methods 25:402-408
36. Huang JL, Gu M, Lai ZB, Fan BF, Shi K, Zhou YH, Yu JQ, Chen ZX (2010) Functional analysis of the Arabidopsis PAL gene family in plant growth, development, and response to environmental stress. Plant Physiol 153:1526-1538
37. Pellegrini L, Rohfritsch O, Fritig B, Legrand M (1994) Phenylalanine ammonia-lyase in tobacco: molecular cloning and gene expression during the hypersensitive reaction to tobacco mosaic virus and the response to a fungal elicitor. Plant Physiol 106:877-886
38. Diallinas G, Kanellis AK (1994) A phenylalanine ammonia-lyase gene from melon fruit: cDNA cloning, sequence and expression in response to development and wounding. Plant Mol Biol 26:473-479
39. Li CL, Bai YC, Chen H, Zhao HX, Shao JR, Qi Wu (2012) Cloning, characterization and functional analysis of a phenylalanine ammonia-lyase Gene (FtPAL) from Fagopyrum tataricum gaertn. Plant Mol Biol Rep 30:1172-1182
40. Mu HM, Wang R, Li XD, Jiang YM, Wang CY, Quan JP, Peng F, Xia B (2009) Effect of abiotic and biotic elicitors on growth and alkaloid accumulation of Lycoris chinensis seedlings. Z Naturforsch C 64(7-8):541-550