Genes encoding enzymes of the lignin biosynthesis pathway in Eucalyptus

Genetics and Molecular Biology

Volumn 28, Issue 3 SUPPL., 2005, Pages 601-607

  Harakava, Ricardo ^a,b  

^a INSTITUTO BIOLÓGICO   (Brazil)

^b NONE   (Brazil)

Author keywords

Eucalyptus; Expressed sequenced tag; Lignin; Monolignols; Phenylpropanoids pathway

Indexed keywords

CHITINASE; CINNAMATE 4 MONOOXYGENASE; LACCASE; LIGNIN; LONG CHAIN FATTY ACID COENZYME A LIGASE; MESSENGER RNA; METHYLTRANSFERASE; OXYGENASE; PARA COUMARIC ACID; PHENYLALANINE AMMONIA LYASE;

AMINO ACID SEQUENCE; ARTICLE; BIOSYNTHESIS; CONTROLLED STUDY; ENDOPLASMIC RETICULUM; ENZYME ASSAY; ENZYME LOCALIZATION; EUCALYPTUS; EXPRESSED SEQUENCE TAG; GENE EXPRESSION; GENE IDENTIFICATION; GENETIC ENGINEERING; GENETIC POLYMORPHISM; LIGNIFICATION; MULTIGENE FAMILY; NONHUMAN; ORTHOLOGY; PROTEIN EXPRESSION; RNA EXTRACTION; WOOD;

EUCALYPTUS;

EID: 30844470221     PISSN: 14154757     EISSN: 16784685     Source Type: Journal    
DOI: 10.1590/s1415-47572005000400015     Document Type: Article

References (51)

1. Achnine L, Blancaflor EB, Rasmussen S and Dixon RA (2004) Colocalization of L-phenylalanine ammonia-lyase and cinnamate 4-hydroxylase for metabolic channeling in phenylpropanoid pathway. Plant Cell 16:309-3109.
2. Allona I, Quinn M, Shoop E, Swope K, St Cyr S, Carlis J, Riedl J, Retzel E, Campbell MM, Sederoff R and Whetten RW (1998) Analysis of xylem formation in pine by cDNA sequencing. Proc Natl Acad Sci USA 95:9693-9698.
3. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W and Lipman DJ (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucl Acids Res 25:3389-3402.
4. Appert C, Logemann E, Hahlbrock K, Schmid J and Armhein N (1994). Structural and catalytic properties of the four phenylalanine ammonia-lyase isoenzymes from parsley (Petroselinum crispum Nym.) Eur J Biochem 225:491-499.
5. Baucher M, Halpin C, Petit-Conil M and Boerjan W (2003) Lignin: Genetic engineering and impact on pulping. Crit Rev Biochem Mol Biol 38:305-350.
6. Betz C, McCollum TG and Mayer RT (2001) Differential expression of two cinnamate 4-hydroxylase genes in 'Valencia' orange (Citrus sinensis Osbeck). Plant Mol Biol 46:741-748.
7. Blount JW, Korth KL, Masoud SA, Rasmussen S, Lamb C and Dixon RA (2000) Altering expression of cinnamic acid 4-hydroxylase in transgenic plants provides evidence for a feedback loop at the entry point into the phenylpropanoid pathway. Plant Physiol 122:107-116.
8. Boerjan W, Ralph J and Baucher M (2003) Lignin biosynthesis. Annu Rev Plant Biol 54:519-546.
9. Cochrane FC, Davin LB and Lewis NG (2004) The Arabidopsis phenylalanine ammonia lyase gene family: Kinetic characterization of the four PAL isoforms. Phytochem 65:1557-1564.
10. Costa MA, Collins RE, Anterola AM, Cochrane FC, Davin LB and Lewis NG (2003) An in silico assessment of gene function and organization of the phenylpropanoid pathway metabolic networks in Arabidopsis thaliana and limitations thereof. Phytochem 64:1097-1112.
11. Davin LB, Wang HB, Crowell AL, Bedgar DL, Martin DM, Sarkanen S and Lewis NG (1997) Stereoselective bimolecular phenoxy radical coupling by an auxiliary (dirigent) protein without an active center. Science 275:362-366.
12. De Melis LE, Whiteman PH and Stevenson TW (1999) Isolation and characterization of a cDNA clone encoding cinnamyl alcohol dehydrogenase in Eucalyptus globulus Labill. Plant Sci 143:173-182.
13. Endt DV, Costa P, Zago MK, Zanettini MHB and Pasquali G (2000) Genes de lignificação: Em busca do eucalipto transgênico com reduzidos teores de ligninas. Bioteenolog Cienc Desenvolv 15:152-159.
14. Feuillet C, Lauvergeat V, Deswarte C, Pilate G, Boudet A and Grima-Pettenati J (1995) Tissue- and cell-specific expression of a cinnamyl alcohol dehydrogenase promoter in transgenic poplar plants. Plant Mol Biol 27:651-667.
15. Franke R, Humphreys JM, Hemm MR, Denault JW, Ruegger MO, Cusumano JC and Chapple C (2002) The Arabidopsis REF8 gene encodes the 3-hydroxylase of phenylpropanoid metabolism. Plant J 30:33-45.
16. Gang DR, Costa MA, Fujita M, Dinkova-Kostova AT, Wang HB, Burlat V, Martin W, Sarkanen S, Davin LB and Lewis NG (1999) Regiochemical control of monolignot radical coupling: A new paradigm for lignin and lignan biosynthesis. Chem Biol 6:143-151.
17. Grima-Pettenati J, Feuillet C, Goffner D, Borderies G and Boudet AM (1993) Molecular cloning and expression of a Eucalyptus gunnii cDNA clone encoding cinnamyl alcohol dehydrogenase. Plant Mol Biol 21:1085-1095.
18. Hall TA (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95-98.
19. Hibino T, Chen JQ, Shibata D and Higuchi T (1994) Nucleotide sequence of a Eucalyptus botryoides gene encoding cinnamyl alcohol dehydrogenase. Plant Physiol 104:305-306.
20. Hoffmann L, Maury S, Martz F, Geoffroy P and Legrand M (2003) Purification, cloning, and properties of an acyl-transferase controlling shikimate and quinate ester intermediates in phenylpropanoid metabolism. J Biol Chem 278:95-103.
21. Hrazdina G and Wagner G (1985) Metabolic pathways as enzyme complexes: Evidence for the synthesis of phenylpropanoids and flavonoids on membrane-associated enzyme complexes. Arch Biochem Biophys 237:88-100.
22. Humphreys JM, Hemm MR and Chapple C (1999) New routes for lignin biosynthesis defined by biochemical characterization of recombinant ferulate 5-hydroxylase, a multifunctional cytochrome P450-dependent monooxygenase. Proc Natl Acad Sci USA 96:10045-10050.
23. Humphreys JM and Chapple C (2002) Rewriting the lignin roadmap. Curr Opin Plant Biol 5:224-229.
24. Jones L, Ennos AR and Turner SR (2001) Cloning and characterization of irregular xylem4 (irx4): A severely lignin-deficient mutant of Arabidepsis. Plant J 26:205-216.
25. Kao YY, Harding SA and Tsai CJ (2002) Differential expression of two distinct phenylalanine ammonia-lyase genes in condensed annin-accumulating and lignifying cells of quaking aspen. Plant Physiol 130:796-807.
26. Kim MK, Jeon JH, Fujita M, Davin LB and Lewis NG (2002) The western red cedar (Thuja plicata) 8-8' dirigent family displays diverse expression patterns and conserved monolignol coupling specificity. Plant Mol Biol 49:199-214.
27. Kim SJ, Kim MR, Bedgar DL, Moinuddin SG, Cardenas CL, Davin LB, Kang C and Lewis NG (2004) Functional reclassification of the putative cinnamyl alcohol dehydrogenase multigene family in Arabidopsis. Proc Natl Acad Sci USA 101:1455-1460.
28. Kumar A and Ellis BE (2001) The phenylalanine arnmonia-lyase gene family in raspberry. Structure, expression, and evolution. Plant Physiol 127:230-239.
29. Lacombe E, Hawkins S, Van Doorsselaere J, Piquernal J, Goffner D, Poeydomenge O, Boudet AM and Grima-Pettenati J (1997) Cinnamoyl CoA reductase, the first committed enzyme of the lignin branch biosynthetic pathway: Cloning, expression and phylogenetic relationships. Plant J 11:429-441.
30. Li L, Cheng XF, Leshkevich J, Umezawa T, Harding SA and Chiang VL (2001) The last step of syringyl monolignol biosynthesis in angiosperms is regulated by a novel gene encoding sinapyl alcohol dehydrogenase. Plant Cell 13:1567-1586.
31. Li L, Zhou Y, Cheng X, Sun J, Marita JM, Ralph J and Chiang VL (2003) Combinatorial modification of multiple lignin traits in trees through multigene cotransformation. Proc Natl Acad Sci USA 100:4939-4944.
32. Meyermans H, Morreel K, Lapierre C, Pollet B, De Bruyn A, Busson R, Herdewijn P, Devreese B, Van Beeumen J, Marita JM, Ralph J, Chen C, Burggraeve B, Van Montagu M, Messens E and Boerjan W (2000) Modifications in lignin and accumulation of phenolic glucosides in poplar xylem upon down-regulation of caffeoyl-coenzyme A O-methyl-transferase, an enzyme involved in lignin biosynthesis. J Biol Chem 275:36899-36909.
33. Nair RB, Xia Q, Kartha CJ, Kurylo E, Hirji RN, Datla R and Selvaraj G (2002) Arabidopsis CYP98A3 mediating aromatic 3-hydroxylation. Developmental regulation of the gene, and expression in yeast. Plant Physiol 130:210-220.
34. Nakai K and Kanehisa M (1992) A knowledge base for predicting protein localization sites in eukaryotic cells. Genomics 14:897-911.
35. Nedelkina S, Jupe SC, Blee KA, Schalk M, Werck-Reichhart D and Bolwell GP (1999) Novel characteristics and regulation of a divergent cinnamate 4-hydroxylase (CYP73A15) from French bean: engineering expression in yeast. Plant Mol Biol 39:1079-1090.
36. Osakabe Y, Osakabe K, Kawai S, Katayama Y and Morohoshi N (1995) Characterization of the structure and determination of mRNA levels of the phenylalanine ammonia-lyase gene family from Populus kitakamiensis. Plant Mol Biol 28:1133-1141.
37. Osakabe K, Tsao CC, Li L, Popko JL, Umezawa T, Carraway DT, Smeltzer RH, Joshi CP and Chiang VL (1999) Coniferyl aldehyde 5-hydroxylation and methylation direct syringyl lignin biosynthesis in angiosperms. Proc Natl Acad Sci USA 96:8955-8960.
38. Parvathi K, Chen F, Guo D, Blount JW and Dixon RA (2001) Substrate preferences of O-methyltransferases in alfalfa suggest new pathways for 3-O-methylation of monolignols. Plant J 25:193-202.
39. Pilate G, Guiney E, Holt K, Petit-Conil M, Lapierre C, Leple JC, Pollet B, Mila I, Webster EA, Marstorp HG, Hopkins DW, Jouanin L, Boerjan W, Schuch W, Cornu D and Halpin C (2002) Field and pulping performances of transgenic trees with altered lignification. Nat Biotechnol 20:607-612.
40. Poeydomenge O, Boudet AM and Grima-Pettenati J (1994) A cDNA encoding S-adenosyl-L-methionine:caffeic acid 3-O-methyltransferase from Eucalyptus. Plant Physiol 105:749-750.
41. Raes J, Rohde A, Christensen JH, Van de Peer Y and Boerjan W (2003) Genome-wide characterization of the lignification toolbox in Arabidopsis. Plant Physiol 133:1051-1071.
42. Ranocha P, Chabannes M, Chamayou. S, Danoun S, Jauneau A, Boudet AM and Goffner D (2002) Laccase down-regulation causes alterations in phenolic metabolism and cell wall structure in poplar. Plant Physiol 129:145-155.
43. Rasmussen S and Dixon RA (1999) Transgene-mediated and elicitor-induced perturbation of metabolic channeling at the entry point into the phenylpropanoid pathway. Plant Cell 11:1537-1551.
44. Ro DK and Douglas CJ (2004) Reconstitution of the entry point of plant phenylpropanoid metabolism in yeast (Saccharomyces cerevisiae): Implications for control of metabolic flux into the phenylpropanoid pathway. J Biol Chem 279:2600-2607.
45. Ro DK, Mah N, Ellis BE and Douglas CJ (2001) Functional characterization and subcellular localization of poplar (Populus trichocarpa x Populus deltoides) cinnamate 4-hydroxylase. Plant Physiol 126:317-329.
46. Schoch G, Goepfert S, Morant M, Hehn A, Meyer D, Ullmann P and Werck-Reichhart D (2001) CYP98A3 from Arabidopsis thaliana is a 3'-hydroxylase of phenolic esters, a missing link in the phenylpropanoid pathway. J Biol Chem 276:36566-36574.
47. Sterky F, Regan S, Karlsson J, Hertzberg M, Rohde A, Holmberg A, Amini B, Bhalerao R, Larsson M, Villarroel R, Van Montagu M, Sandberg G, Olsson O, Teeri TT, Boerjan W, Gustafsson P, Uhlén M, Sundberg B and Lundeberg J (1998) Gene discovery in the wood-forming tissues of poplar: Analysis of 5,692 expressed sequence tags. Proc Natl Acad Sci USA 95:13330-13335.
48. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F and Higgins DG (1997) The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acids Res 25:4876-4882.
49. Walter MH, Grima-Pettenati J, Grand C, Boudet AM and Lamb CJ (1988) Cinnamyl-alcohol dehydrogenase, a molecular marker specific for lignin synthesis: cDNA cloning and mRNA induction by fungal elicitor. Proc Natl Acad Sci USA 85:5546-5550.
50. Winkel BSJ (2004) Metabolic channeling in plants. Annu Rev Plant Biol 55:85-107.
51. Zhong R, Kays SJ, Schroeder BP and Ye ZH (2002) Mutation of a chitinase-like gene causes ectopic deposition of lignin, aberrant cell shapes, and overproduction of ethylene. Plant Cell 14:165-179.