Molecular characterization of a phenylalanine ammonia-lyase gene (BoPAL1) from Bambusa oldhamii

Molecular Biology Reports

Volumn 38, Issue 1, 2011, Pages 283-290

  Hsieh, Lu Sheng ^a   Hsieh, Yi Lin ^a   Yeh, Chuan Shan ^a   Cheng, Chieh Yang ^a   Yang, Chien Chih ^a   Lee, Ping Du ^a  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

Bamboo (Bambusa oldhamii); Gene expression; Molecular cloning; Phenylalanine ammonia lyase (PAL); TAIL PCR

Indexed keywords

COMPLEMENTARY DNA; PHENYLALANINE AMMONIA LYASE;

ALPHA HELIX; ARTICLE; BAMBUSA; BAMBUSA OLDHAMII; BETA SHEET; DNA FLANKING REGION; DNA LIBRARY; ENZYME ACTIVITY; GEL FILTRATION CHROMATOGRAPHY; GENE EXPRESSION; MOLECULAR CLONING; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PH; PICHIA PASTORIS; PLANT GENETICS; POLYMERASE CHAIN REACTION; PROTEIN FUNCTION; PROTEIN STRUCTURE; SEQUENCE HOMOLOGY;

5' FLANKING REGION; BAMBUSA; BASE SEQUENCE; CHROMATOGRAPHY, AFFINITY; CLONING, MOLECULAR; GENES, PLANT; KINETICS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHENYLALANINE AMMONIA-LYASE; PICHIA; PLANT PROTEINS; RECOMBINANT PROTEINS; REGULATORY SEQUENCES, NUCLEIC ACID; SPECIES SPECIFICITY;

DENDROCALAMOPSIS OLDHAMII; MAGNOLIOPHYTA; PICHIA PASTORIS;

EID: 78651098665     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-010-0106-2     Document Type: Article

References (49)

1. J Koukol EE Conn 1961 Metabolism of aromatic compounds in higher plants. IV. Purification and properties of phenylalanine deaminase of Horden vulgare J Biol Chem 236 2692 2698 1:STN:280:DyaF38%2FmtValtQ%3D%3D 14458851
2. K Hahlbrock D Scheel 1989 Physiology and molecular biology of phenyl-propanoid metabolism Annu Rev Plant Physiol Plant Mol Biol 40 347 369 1:CAS:528:DyaL1MXktlKmu74%3D 10.1146/annurev.pp.40.060189.002023
3. RA Dixon NL Paiva 1995 Stress induced phenylpropanoid metabolism Plant Cell 7 1085 1097 1:CAS:528:DyaK2MXnt1Sgt7k%3D 10.1105/tpc.7.7.1085 12242399
4. AD Sarma Y Sreelakshmi R Sharma 1998 Differential expression and properties of phenylalanine ammonia-lyase isoforms in tomato leaves Phytochemistry 49 2233 2243 1:CAS:528:DyaK1MXjslOhuw%3D%3D 10.1016/S0031- 9422(98)00336-7 9887524 (Pubitemid 29016212)
5. AD Sarma R Sharma 1999 Purification and characterization of UV-B induced phenylalanine ammonia-lyase from rice seeding Phytochemistry 50 729 737 1:CAS:528:DyaK1MXit1Ogur0%3D 10.1016/S0031-9422(98)00608-6 (Pubitemid 29135033)
6. H Hisaminato M Murata S Homma 2001 Relationship between the enzymatic browning and phenylalanine ammonia-lyase activity of cut lettuce, and the prevention of browning by inhibitors of polyphenol biosynthesis Biosci Biotechnol Biochem 65 1016 1021 1:CAS:528:DC%2BD3MXktFais74%3D 10.1271/bbb.65.1016 11440111 (Pubitemid 33665952)
7. LH Nugroho MC Verberne R Verpoorte 2002 Activities of enzymes involved in the phenylpropanoid pathway in constitutively salicylic acid-producing tobacco plants Plant Physiol Biochem 40 755 760 1:CAS:528:DC%2BD38Xnt1GgtLk%3D 10.1016/S0981-9428(02)01437-7 (Pubitemid 35224873)
8. ME Chaman SV Copaja VH Argandona 2003 Relationships between salicylic acid content, phenylalanine ammonia-lyase (PAL) activity, and resistance of barley to aphid infestation J Agric Food Chem 51 2227 2231 1:CAS:528: DC%2BD3sXhs1OksLY%3D 10.1021/jf020953b 12670161
9. Y Lu H Wang W Wang Z Qian L Li J Wang G Zhou G Kai 2009 Molecular characterization and expression analysis of a new cDNA encoding strictosidine synthase from Ophiorrhiza japonica Mol Biol Rep 36 1845 1852 1:CAS:528:DC%2BD1MXptV2ntL8%3D 10.1007/s11033-008-9389-y 18987991
10. SH Kim JW Kronstad BE Ellis 1996 Purification and characterization of phenylalanine ammonia-lyase from Ustilago maydis Phytochemistry 43 351 357 1:CAS:528:DyaK28Xls1yrsrc%3D 10.1016/0031-9422(96)00282-8 (Pubitemid 27065547)
11. T Hattori A Nishiyawa M Shimada 1999 Induction of L-phenylalanine ammonia-lyase and suppression of veratryl alcohol biosynthesis by exogenously added L-phenylalanine in a white-rot fungus Phanerochaete chrysosporium FEMS Microbiol Lett 179 305 309 1:CAS:528:DyaK1MXmsFarsbg%3D 10518730
12. MC Moffitt GV Louie ME Bowman J Pence JP Noel BS Moore 2007 Discovery of the cyanobacterial phenylalanine ammonia-lyases: kinetic and structural characterization Biochemistry 46 1004 1012 1:CAS:528:DC%2BD2sXhtlaqtg%3D%3D 10.1021/bi061774g 17240984 (Pubitemid 46184988)
13. L Xiang BS Moore 2005 Biochemical characterization of a prokaryotic phenyl-alanine ammonia lyase J Bacteriol 187 4286 4289 1:CAS:528: DC%2BD2MXltlWksbs%3D 10.1128/JB.187.12.4286-4289.2005 15937191 (Pubitemid 40827811)
14. H Ritter GE Schulz 2004 Structural basis of the entrance into the phenylpropanoid metabolism catalyzed by phenylalanine ammonia-lyase Plant Cell 16 3426 6436 1:CAS:528:DC%2BD2MXhtVKkuw%3D%3D 10.1105/tpc.104.025288 15548745 (Pubitemid 41096016)
15. C Appert E Logemann K Hahlbrock J Schmid N Amrhein 1994 Structural and catalytic properties of the four phenylalanine ammonia-lyase isozymes from parsley (Petroselinum crispum Nym.) Eur J Biochem 225 491 499 1:CAS:528:DyaK2MXhtVaqtb4%3D 10.1111/j.1432-1033.1994.00491.x 7925471 (Pubitemid 24306276)
16. E Logemann M Parniske K Hahlbrock 1995 Modes of expression and common structural features of the complete phenylalanine ammonia-lyase gene family in parsley Proc Natl Acad Sci USA 92 5905 5909 1:CAS:528:DyaK2MXmsFWqtL4%3D 10.1073/pnas.92.13.5905 7597051
17. LA Wanner G Li D Ware IE Somssich KR Davis 1995 The phenylalanine ammonia-lyase gene family in Arabidopsis thaliana Plant Mol Biol 27 327 338 1:CAS:528:DyaK2MXkt1Kgs70%3D 10.1007/BF00020187 7888622
18. FC Cochrane LB Davin NG Lewis 2004 The Arabidopsis phenylalanine ammonia- lyase gene family: kinetic characterization of the four PAL isoforms Phytochemistry 65 1557 1564 1:CAS:528:DC%2BD2cXmtVCjsrk%3D 10.1016/j.phytochem. 2004.05.006 15276452 (Pubitemid 38969937)
19. J Guo WH Wang 2009 Characterization of the phenylalanine ammonia-lyase gene (SlPAL5) from tomato (Solanum lycopersicum L.) Mol Biol Rep 36 1579 1585 1:CAS:528:DC%2BD1MXmtlOnsL4%3D 10.1007/s11033-008-9354-9 18791854
20. M Chávez-Avilés AL Díaz-Pérez J Campos-García 2010 The bifunctional role of LiuE from Pseudomonas aeruginosa, displays additionally HIHG-CoA lyase enzymatic activity Mol Biol Rep 37 1787 1791 10.1007/s11033-009-9611-6 19597963
21. EA Havir PD Reid HV Marsh Jr 1971 L-phenylalanine ammonia-lyase (maize) Plant Physiol 48 130 136 1:CAS:528:DyaE3MXksFyqtL4%3D 10.1104/pp.48.2.130 16657749
22. J Rösler F Krekel N Amrhein J Schmid 1997 Maize phenylalanine ammonia-lyase has tyrosine ammonia-lyase activity Plant Physiol 113 175 179 10.1104/pp.113.1.175 9008393
23. JA Kyndt TE Meyer MA Cusanovich JJ Van Beeumen 2002 Characterization of a bacterial tyrosine ammonia lyase, a biosynthetic enzyme for the photoactive yellow protein FEBS Lett 512 240 244 1:CAS:528:DC%2BD38XhtlGhu7w%3D 10.1016/S0014-5793(02)02272-X 11852088 (Pubitemid 34164487)
24. KT Watts BN Mijts PC Lee AJ Manning C Schmidt-Dannert 2006 Discovery of a substrate selectivity switch in tyrosine ammonia-lyase, a member of the aromatic amino acid lyase family Chem Biol 13 1317 1326 1:CAS:528: DC%2BD2sXht1Cjsw%3D%3D 10.1016/j.chembiol.2006.10.008 17185227 (Pubitemid 44918386)
25. GV Louie ME Bowman MC Moffitt TJ Baiga BS Moore NP Noel 2006 Structural determinants and modulation of substrate specificity in phenylalanine-tyrosine ammonia-lyase Chem Biol 13 1327 1338 1:CAS:528:DC%2BD2sXht1CjsA%3D%3D 10.1016/j.chembiol.2006.11.011 17185228 (Pubitemid 44918389)
26. FA Tomas-Barberan MI Gill M Castaner F Artes ME Saltveit 1997 Effect of selected browning inhibitors on phenolic metabolism in stem tissue of harvested lettuce J Agric Food Chem 45 583 589 1:CAS:528:DyaK2sXhtlaks7k%3D 10.1021/jf960478f
27. LS Hsieh CS Yeh HC Pan CY Cheng CC Yang PD Lee 2010 Cloning and expression of a phenylalanine ammonia-lyase gene (BoPAL2) from Bambusa oldhamii in Escherichia coli and Pichia pastoris Protein Expr Purif 71 224 230 1:CAS:528:DC%2BC3cXjslSru7w%3D 10.1016/j.pep.2010.01.009 20064614
28. AN Spiess R Ivell 2002 A highly efficient method for long-chain cDNA synthesis using trehalose and betaine Anal Biochem 301 168 174 1:CAS:528:DC%2BD38Xns1Gqug%3D%3D 10.1006/abio.2001.5474 11814287 (Pubitemid 34158181)
29. R Terauchi G Kahl 2000 Rapid isolation of promoter sequences by TAIL-PCR: the 5′-flanking regions of Pal and Pgi genes from yams (Dioscorea) Mol Gen Genet 263 554 560 1:CAS:528:DC%2BD3cXjsFeqtL0%3D 10.1007/s004380051201 10821191
30. IA Shahmuradov AJ Gammerman JM Hancock PM Bramley VV Solovyev 2003 PlantProm: a database of plant promoter sequences Nucleic Acids Res 31 114 117 1:CAS:528:DC%2BD3sXhvFSns7g%3D 10.1093/nar/gkg041 12519961 (Pubitemid 36150347)
31. WC Chang TY Lee HD Huang HY Huang RL Pan 2008 PlantPAN: plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene group BMC Genomics 9 561 10.1186/1471-2164-9- 561 19036138
32. MM Bradford 1976 A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal Biochem 72 248 254 1:CAS:528:DyaE28XksVehtrY%3D 10.1016/0003-2697(76)90527- 3 942051
33. GB D'Cunha S Satyanarayan PM Nair 1996 Purification of phenylalanine ammonia lyase from Rhodotorula glutinis Phytochemistry 42 17 20 10.1016/0031-9422(95)00914-0 (Pubitemid 3043388)
34. J Rétey 2003 Discovery and role of methylidene imidazolone, a highly electrophilic prosthetic group Biochim Biophys Acta 1647 179 184 12686130
35. MJ MacDonald GB D'Cunha 2007 A modern view of phenylalanine ammonia-lyase Biochem Cell Biol 85 273 282 1:CAS:528:DC%2BD2sXnvVaqsro%3D 10.1139/O07-018 17612622 (Pubitemid 47025907)
36. J Song Z Wang 2009 Molecular cloning, expression and characterization of a phenylalanine ammonia-lyase gene (SmPAL1) from Salvia miltiorrhiza Mol Biol Rep 36 939 952 1:CAS:528:DC%2BD1MXjvFaqurs%3D 10.1007/s11033-008-9266-8 18454352
37. E Minami Y Ozeki M Matsuoka N Koizuka Y Tanaka 1989 Structure and some characterization of the gene for phenylalanine ammonia-lyase from rice plants Eur J Biochem 185 19 25 1:CAS:528:DyaK3cXhslegtrc%3D 10.1111/j.1432-1033.1989. tb15075.x 2806257
38. F Xu R Cai S Cheng H Du Y Wang S Cheng 2008 Molecular cloning, characterization and expression of phenylalanine ammonia-lyase gene from Ginkgo biloba Afr J Biotechnol 7 721 729 (Pubitemid 351488642)
39. Q Zhu MI Ordiz T Dabi RN Beachy CJ Lamb 2002 Rice TATA binding protein interacts functionally with transcription factor IIB and the RF2a bZIP transcriptional activator in an enhanced plant in vitro transcription system Plant Cell 14 795 803 1:CAS:528:DC%2BD38XjsFWksbg%3D 10.1105/tpc.010364 11971135 (Pubitemid 34519602)
40. RWM Sablowski E Moyano FA Culianez-Macia W Schuch C Martin M Bevan 1994 A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes EMBO J 13 128 137 1:CAS:528:DyaK2cXpvVaktA%3D%3D 8306956
41. E Lam NH Chua 1989 ASF-2: a factor that binds to the cauliflower mosaic virus 35S promoter and a conserved GATA motif in cab promoters Plant Cell 1 1147 1156 1:CAS:528:DyaK3MXhsFynu7k%3D 10.1105/tpc.1.12.1147 2535536
42. WB Terzaghi AR Cashmore 1995 Light-regulated transcription Annu Rev Plant Physiol Plant Mol Biol 46 445 474 1:CAS:528:DyaK2MXmsVCqur8%3D 10.1146/annurev.pp.46.060195.002305
43. ME Hudson PH Quail 2003 Identification of promoter motifs involved in the network of phytochrome A-regulated gene expression by combined analysis of genomic sequence and microarray data Plant Physiol 133 1605 1616 1:CAS:528:DC%2BD2cXhvFei 10.1104/pp.103.030437 14681527 (Pubitemid 38047292)
44. CA Lu THD Ho SL Ho SM Yu 2002 Three novel MYB proteins with one DNA binding repeat mediate sugar and hormone regulation of alpha-amylase gene expression Plant Cell 14 1963 1980 1:CAS:528:DC%2BD38XmslCgsrg%3D 10.1105/tpc.001735 12172034 (Pubitemid 35002945)
45. HW Lim SS Park CJ Lim 1997 Purification and properties of phenylalanine ammonia-lyase from leaf mustard Mol Cells 7 715 720 1:CAS:528: DyaK1cXjvFCrsQ%3D%3D 9509410
46. Y Tanaka I Uritani 1977 Purification and properties of phenylalanine ammonia-lyase in cut injured sweet potato J Biochem 81 963 970 1:CAS:528:DyaE2sXktFOrtb0%3D 18455 (Pubitemid 8114901)
47. M Jain P Khurana AK Tyagi JP Khurana 2008 Genome-wide analysis of intronless genes in rice and Arabidopsis Funct Integr Genomics 8 69 78 1:CAS:528:DC%2BD2sXhsVGhurrO 10.1007/s10142-007-0052-9 17578610
48. S Lin Y Hu X Wang L Han S Song H Cheng Z Lin 2009 Isolation and characterization of a gene encoding cinnamate 4-hydroxylase from Parthenocissus henryana Mol Biol Rep 36 1605 1610 10.1007/s11033-008-9357-6 18791809
49. JL Cereghino JM Cregg 2000 Heterologous protein expression in the methylotrophic yeast Pichia pastrois FEMS Microbiol Rev 24 45 66 1:CAS:528:DC%2BD3cXltVClug%3D%3D 10.1111/j.1574-6976.2000.tb00532.x 10640598