메뉴 건너뛰기




Volumn 124, Issue 6, 2012, Pages 893-903

Selection of novel reference genes for use in the human central nervous system: A BrainNet Europe Study

(20)  Durrenberger, Pascal F a   Fernando, Francisca S a   Magliozzi, Roberta b   Kashefi, Samira N a   Bonnert, Timothy P c   Ferrer, Isidro d   Seilhean, Danielle e,f   Nait Oumesmar, Brahim e,f   Schmitt, Andrea g   Gebicke Haerter, Peter J h   Falkai, Peter g   Grünblatt, Edna i,j   Palkovits, Miklos k   Parchi, Piero l   Capellari, Sabina l   Arzberger, Thomas m   Kretzschmar, Hans m   Roncaroli, Federico a   Dexter, David T a   Reynolds, Richard a  


Author keywords

Gene expression studies; Internal controls; Neurodegeneration; Normalisation; Post mortem tissue; Validation

Indexed keywords

AARS GENE; ARTICLE; ATP5E GENE; BECN1 GENE; CENTRAL NERVOUS SYSTEM; CONTROLLED STUDY; CSNK2B GENE; DCTN2 GENE; GAPDH GENE; GAPVD1 GENE; GENE; GENE EXPRESSION; GENE IDENTIFICATION; GENETIC ANALYSIS; GENETIC STABILITY; HUMAN; HUMAN TISSUE; MAJOR CLINICAL STUDY; NAT5 GENE; NUCLEOTIDE SEQUENCE; OSBP GENE; PRIORITY JOURNAL; QARS GENE; QUANTITATIVE ANALYSIS; REFERENCE GENE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TUBB GENE; XPNPEP1 GENE;

EID: 84878346460     PISSN: 00016322     EISSN: 14320533     Source Type: Journal    
DOI: 10.1007/s00401-012-1027-z     Document Type: Article
Times cited : (98)

References (54)
  • 1
    • 58149308844 scopus 로고    scopus 로고
    • Altered lipid metabolism in brain injury and disorders
    • 18751914 10.1007/978-1-4020-8831-5-9
    • Adibhatla RM, Hatcher JF (2008) Altered lipid metabolism in brain injury and disorders. Subcell Biochem 49:241-268
    • (2008) Subcell Biochem , vol.49 , pp. 241-268
    • Adibhatla, R.M.1    Hatcher, J.F.2
  • 2
    • 0030470894 scopus 로고    scopus 로고
    • Localisation of eight additional genes in the human major histocompatibility complex, including the gene encoding the casein kinase II beta subunit, and DNA sequence analysis of the class III region
    • 1:CAS:528:DyaK2sXjtFygurg%3D
    • Albertella MR, Jones H, Thomson W, Olavesen MG, Neville M, Campbell RD (1996) Localisation of eight additional genes in the human major histocompatibility complex, including the gene encoding the casein kinase II beta subunit, and DNA sequence analysis of the class III region. DNA Seq J DNA Seq Mapp 7:9-12
    • (1996) DNA Seq J DNA Seq Mapp , vol.7 , pp. 9-12
    • Albertella, M.R.1    Jones, H.2    Thomson, W.3    Olavesen, M.G.4    Neville, M.5    Campbell, R.D.6
  • 3
    • 33745713158 scopus 로고    scopus 로고
    • TaqMan PCR assay in the control of RNA normalization in human post-mortem brain tissue
    • 16522342 10.1016/j.neuint.2006.01.018 1:CAS:528:DC%2BD28Xms1aisrk%3D
    • Barrachina M, Castano E, Ferrer I (2006) TaqMan PCR assay in the control of RNA normalization in human post-mortem brain tissue. Neurochem Int 49:276-284
    • (2006) Neurochem Int , vol.49 , pp. 276-284
    • Barrachina, M.1    Castano, E.2    Ferrer, I.3
  • 4
    • 0028198617 scopus 로고
    • Sequence and structure comparison suggest that methionine aminopeptidase, prolidase, aminopeptidase P, and creatinase share a common fold
    • 8146141 10.1073/pnas.91.7.2473 1:CAS:528:DyaK2cXktVersbc%3D
    • Bazan JF, Weaver LH, Roderick SL, Huber R, Matthews BW (1994) Sequence and structure comparison suggest that methionine aminopeptidase, prolidase, aminopeptidase P, and creatinase share a common fold. Proc Natl Acad Sci USA 91:2473-2477
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 2473-2477
    • Bazan, J.F.1    Weaver, L.H.2    Roderick, S.L.3    Huber, R.4    Matthews, B.W.5
  • 6
    • 0033775615 scopus 로고    scopus 로고
    • Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays
    • 11013345 10.1677/jme.0.0250169 1:CAS:528:DC%2BD3cXnslKgtb8%3D
    • Bustin SA (2000) Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. J Mol Endocrinol 25:169-193
    • (2000) J Mol Endocrinol , vol.25 , pp. 169-193
    • Bustin, S.A.1
  • 7
    • 0036668567 scopus 로고    scopus 로고
    • Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): Trends and problems
    • 12200227 10.1677/jme.0.0290023 1:CAS:528:DC%2BD38XmvFOhu7s%3D
    • Bustin SA (2002) Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems. J Mol Endocrinol 29:23-39
    • (2002) J Mol Endocrinol , vol.29 , pp. 23-39
    • Bustin, S.A.1
  • 9
    • 21344458602 scopus 로고    scopus 로고
    • Quantitative real-time RT-PCR - A perspective
    • 15956331 10.1677/jme.1.01755 1:CAS:528:DC%2BD2MXlslCju7g%3D
    • Bustin SA, Benes V, Nolan T, Pfaffl MW (2005) Quantitative real-time RT-PCR - a perspective. J Mol Endocrinol 34:597-601
    • (2005) J Mol Endocrinol , vol.34 , pp. 597-601
    • Bustin, S.A.1    Benes, V.2    Nolan, T.3    Pfaffl, M.W.4
  • 12
    • 35348886043 scopus 로고    scopus 로고
    • Physiological functions of Atg6/Beclin 1: A unique autophagy-related protein
    • 17893711 10.1038/cr.2007.78 1:CAS:528:DC%2BD2sXhtFKitLnI
    • Cao Y, Klionsky DJ (2007) Physiological functions of Atg6/Beclin 1: a unique autophagy-related protein. Cell Res 17:839-849
    • (2007) Cell Res , vol.17 , pp. 839-849
    • Cao, Y.1    Klionsky, D.J.2
  • 14
    • 70449712602 scopus 로고    scopus 로고
    • Novel roles for GAPDH in cell death and carcinogenesis
    • 19779498 10.1038/cdd.2009.137 1:CAS:528:DC%2BD1MXhsVWlsrzF
    • Colell A, Green DR, Ricci JE (2009) Novel roles for GAPDH in cell death and carcinogenesis. Cell Death Differ 16:1573-1581
    • (2009) Cell Death Differ , vol.16 , pp. 1573-1581
    • Colell, A.1    Green, D.R.2    Ricci, J.E.3
  • 15
    • 44449126570 scopus 로고    scopus 로고
    • Identification of valid reference genes for the normalization of RT qPCR gene expression data in human brain tissue
    • 18460208 10.1186/1471-2199-9-46
    • Coulson DT, Brockbank S, Quinn JG, Murphy S, Ravid R, Irvine GB, Johnston JA (2008) Identification of valid reference genes for the normalization of RT qPCR gene expression data in human brain tissue. BMC Mol Biol 9:46
    • (2008) BMC Mol Biol , vol.9 , pp. 46
    • Coulson, D.T.1    Brockbank, S.2    Quinn, J.G.3    Murphy, S.4    Ravid, R.5    Irvine, G.B.6    Johnston, J.A.7
  • 17
    • 27644563899 scopus 로고    scopus 로고
    • The implications of using an inappropriate reference gene for real-time reverse transcription PCR data normalization
    • 16054107 10.1016/j.ab.2005.05.022 1:CAS:528:DC%2BD2MXos1amt70%3D
    • Dheda K, Huggett JF, Chang JS, Kim LU, Bustin SA, Johnson MA, Rook GA, Zumla A (2005) The implications of using an inappropriate reference gene for real-time reverse transcription PCR data normalization. Anal Biochem 344:141-143
    • (2005) Anal Biochem , vol.344 , pp. 141-143
    • Dheda, K.1    Huggett, J.F.2    Chang, J.S.3    Kim, L.U.4    Bustin, S.A.5    Johnson, M.A.6    Rook, G.A.7    Zumla, A.8
  • 22
    • 0038692119 scopus 로고    scopus 로고
    • Human housekeeping genes are compact
    • 12850439 10.1016/S0168-9525(03)00140-9 1:CAS:528:DC%2BD3sXlt1eitLc%3D
    • Eisenberg E, Levanon EY (2003) Human housekeeping genes are compact. Trends Genet 19:362-365
    • (2003) Trends Genet , vol.19 , pp. 362-365
    • Eisenberg, E.1    Levanon, E.Y.2
  • 23
    • 33644604875 scopus 로고    scopus 로고
    • Neurodegeneration induces upregulation of Beclin 1
    • 16874043 1:CAS:528:DC%2BD28XkvFGjt7o%3D
    • Erlich S, Shohami E, Pinkas-Kramarski R (2006) Neurodegeneration induces upregulation of Beclin 1. Autophagy 2:49-51
    • (2006) Autophagy , vol.2 , pp. 49-51
    • Erlich, S.1    Shohami, E.2    Pinkas-Kramarski, R.3
  • 24
    • 38549169589 scopus 로고    scopus 로고
    • Emerging roles of the oxysterol-binding protein family in metabolism, transport, and signaling
    • 17938859 10.1007/s00018-007-7325-2 1:CAS:528:DC%2BD1cXhs1CqsLc%3D
    • Fairn GD, McMaster CR (2008) Emerging roles of the oxysterol-binding protein family in metabolism, transport, and signaling. Cell Mol Life Sci 65:228-236
    • (2008) Cell Mol Life Sci , vol.65 , pp. 228-236
    • Fairn, G.D.1    McMaster, C.R.2
  • 26
    • 21344471138 scopus 로고    scopus 로고
    • Real-time RT-PCR normalisation; Strategies and considerations
    • 15815687 10.1038/sj.gene.6364190 1:CAS:528:DC%2BD2MXks1Gmtrs%3D
    • Huggett J, Dheda K, Bustin S, Zumla A (2005) Real-time RT-PCR normalisation; strategies and considerations. Genes Immun 6:279-284
    • (2005) Genes Immun , vol.6 , pp. 279-284
    • Huggett, J.1    Dheda, K.2    Bustin, S.3    Zumla, A.4
  • 27
    • 33846258191 scopus 로고    scopus 로고
    • Validation of endogenous controls for quantitative gene expression analysis: Application on brain cortices of human chronic alcoholics
    • 17188656 10.1016/j.brainres.2006.11.026 1:CAS:528:DC%2BD2sXntlKktA%3D%3D
    • Johansson S, Fuchs A, Okvist A, Karimi M, Harper C, Garrick T, Sheedy D, Hurd Y, Bakalkin G, Ekstrom TJ (2007) Validation of endogenous controls for quantitative gene expression analysis: application on brain cortices of human chronic alcoholics. Brain Res 1132:20-28
    • (2007) Brain Res , vol.1132 , pp. 20-28
    • Johansson, S.1    Fuchs, A.2    Okvist, A.3    Karimi, M.4    Harper, C.5    Garrick, T.6    Sheedy, D.7    Hurd, Y.8    Bakalkin, G.9    Ekstrom, T.J.10
  • 28
    • 79952628267 scopus 로고    scopus 로고
    • The Beclin 1 network regulates autophagy and apoptosis
    • 21311563 10.1038/cdd.2010.191 1:CAS:528:DC%2BC3MXjtVCksrc%3D
    • Kang R, Zeh HJ, Lotze MT, Tang D (2011) The Beclin 1 network regulates autophagy and apoptosis. Cell Death Differ 18:571-580
    • (2011) Cell Death Differ , vol.18 , pp. 571-580
    • Kang, R.1    Zeh, H.J.2    Lotze, M.T.3    Tang, D.4
  • 30
    • 56249124005 scopus 로고    scopus 로고
    • Lipid rafts, cholesterol, and the brain
    • 18402986 10.1016/j.neuropharm.2008.02.019 1:CAS:528:DC%2BD1cXhsVWmurfE
    • Korade Z, Kenworthy AK (2008) Lipid rafts, cholesterol, and the brain. Neuropharmacology 55:1265-1273
    • (2008) Neuropharmacology , vol.55 , pp. 1265-1273
    • Korade, Z.1    Kenworthy, A.K.2
  • 32
    • 0032895139 scopus 로고    scopus 로고
    • Chinese hamster ovary cells overexpressing the oxysterol binding protein (OSBP) display enhanced synthesis of sphingomyelin in response to 25-hydroxycholesterol
    • 9869656 1:CAS:528:DyaK1MXjsl2gtg%3D%3D
    • Lagace TA, Byers DM, Cook HW, Ridgway ND (1999) Chinese hamster ovary cells overexpressing the oxysterol binding protein (OSBP) display enhanced synthesis of sphingomyelin in response to 25-hydroxycholesterol. J Lipid Res 40:109-116
    • (1999) J Lipid Res , vol.40 , pp. 109-116
    • Lagace, T.A.1    Byers, D.M.2    Cook, H.W.3    Ridgway, N.D.4
  • 35
    • 34047118063 scopus 로고    scopus 로고
    • Identification of novel universal housekeeping genes by statistical analysis of microarray data
    • 17394773 10.5483/BMBRep.2007.40.2.226 1:CAS:528:DC%2BD2sXkt1Krurk%3D
    • Lee S, Jo M, Lee J, Koh SS, Kim S (2007) Identification of novel universal housekeeping genes by statistical analysis of microarray data. J Biochem Mol Biol 40:226-231
    • (2007) J Biochem Mol Biol , vol.40 , pp. 226-231
    • Lee, S.1    Jo, M.2    Lee, J.3    Koh, S.S.4    Kim, S.5
  • 36
    • 53049106494 scopus 로고    scopus 로고
    • Structure of human cytosolic X-prolyl aminopeptidase: A double Mn(II)-dependent dimeric enzyme with a novel three-domain subunit
    • 18515364 10.1074/jbc.M710274200 1:CAS:528:DC%2BD1cXpsVKmt7s%3D
    • Li X, Lou Z, Zhou W, Ma M, Cao Y, Geng Y, Bartlam M, Zhang XC, Rao Z (2008) Structure of human cytosolic X-prolyl aminopeptidase: a double Mn(II)-dependent dimeric enzyme with a novel three-domain subunit. J Biol Chem 283:22858-22866
    • (2008) J Biol Chem , vol.283 , pp. 22858-22866
    • Li, X.1    Lou, Z.2    Zhou, W.3    Ma, M.4    Cao, Y.5    Geng, Y.6    Bartlam, M.7    Zhang, X.C.8    Rao, Z.9
  • 37
    • 0034615568 scopus 로고    scopus 로고
    • Structure and function of the methionine aminopeptidases
    • 10708856 10.1016/S0167-4838(99)00271-X 1:CAS:528:DC%2BD3cXhsFGktLY%3D
    • Lowther WT, Matthews BW (2000) Structure and function of the methionine aminopeptidases. Biochim Biophys Acta 1477:157-167
    • (2000) Biochim Biophys Acta , vol.1477 , pp. 157-167
    • Lowther, W.T.1    Matthews, B.W.2
  • 38
    • 33947713897 scopus 로고    scopus 로고
    • The N-end rule pathway for regulated proteolysis: Prokaryotic and eukaryotic strategies
    • 17306546 10.1016/j.tcb.2007.02.001 1:CAS:528:DC%2BD2sXjvFGisLk%3D
    • Mogk A, Schmidt R, Bukau B (2007) The N-end rule pathway for regulated proteolysis: prokaryotic and eukaryotic strategies. Trends Cell Biol 17:165-172
    • (2007) Trends Cell Biol , vol.17 , pp. 165-172
    • Mogk, A.1    Schmidt, R.2    Bukau, B.3
  • 39
    • 80053176851 scopus 로고    scopus 로고
    • Selection of candidate housekeeping genes for normalization in human postmortem brain samples
    • 22016602 10.3390/ijms12095461 1:CAS:528:DC%2BC3MXht1SqtLjM
    • Penna I, Vella S, Gigoni A, Russo C, Cancedda R, Pagano A (2011) Selection of candidate housekeeping genes for normalization in human postmortem brain samples. Int J Mol Sci 12:5461-5470
    • (2011) Int J Mol Sci , vol.12 , pp. 5461-5470
    • Penna, I.1    Vella, S.2    Gigoni, A.3    Russo, C.4    Cancedda, R.5    Pagano, A.6
  • 40
    • 34548491164 scopus 로고    scopus 로고
    • Actin, a reliable marker of internal control?
    • 17698053 10.1016/j.cca.2007.07.003 1:CAS:528:DC%2BD2sXhtVCgsL3I
    • Ruan W, Lai M (2007) Actin, a reliable marker of internal control? Clin Chim Acta 385:1-5
    • (2007) Clin Chim Acta , vol.385 , pp. 1-5
    • Ruan, W.1    Lai, M.2
  • 41
    • 52949154680 scopus 로고    scopus 로고
    • Development of tRNA synthetases and connection to genetic code and disease
    • 18765819 10.1110/ps.037242.108 1:CAS:528:DC%2BD1cXht1Cit7%2FM
    • Schimmel P (2008) Development of tRNA synthetases and connection to genetic code and disease. Protein Sci 17:1643-1652
    • (2008) Protein Sci , vol.17 , pp. 1643-1652
    • Schimmel, P.1
  • 42
    • 0034694128 scopus 로고    scopus 로고
    • Effect of experimental treatment on housekeeping gene expression: Validation by real-time, quantitative RT-PCR
    • 11086195 10.1016/S0165-022X(00)00129-9 1:CAS:528:DC%2BD3cXot12rt78%3D
    • Schmittgen TD, Zakrajsek BA (2000) Effect of experimental treatment on housekeeping gene expression: validation by real-time, quantitative RT-PCR. J Biochem Biophys Methods 46:69-81
    • (2000) J Biochem Biophys Methods , vol.46 , pp. 69-81
    • Schmittgen, T.D.1    Zakrajsek, B.A.2
  • 43
    • 0032973950 scopus 로고    scopus 로고
    • New insights into an old protein: The functional diversity of mammalian glyceraldehyde-3-phosphate dehydrogenase
    • 10407139 10.1016/S0167-4838(99)00119-3 1:CAS:528:DyaK1MXlt1eksLg%3D
    • Sirover MA (1999) New insights into an old protein: the functional diversity of mammalian glyceraldehyde-3-phosphate dehydrogenase. Biochim Biophys Acta 1432:159-184
    • (1999) Biochim Biophys Acta , vol.1432 , pp. 159-184
    • Sirover, M.A.1
  • 44
    • 0035161457 scopus 로고    scopus 로고
    • Unsuitability of using ribosomal RNA as loading control for Northern blot analyses related to the imbalance between messenger and ribosomal RNA content in rat mammary tumors
    • 11141312 10.1006/abio.2000.4889 1:CAS:528:DC%2BD3MXhtF2kug%3D%3D
    • Solanas M, Moral R, Escrich E (2001) Unsuitability of using ribosomal RNA as loading control for Northern blot analyses related to the imbalance between messenger and ribosomal RNA content in rat mammary tumors. Anal Biochem 288:99-102
    • (2001) Anal Biochem , vol.288 , pp. 99-102
    • Solanas, M.1    Moral, R.2    Escrich, E.3
  • 45
  • 47
    • 0034569728 scopus 로고    scopus 로고
    • The new aspects of aminoacyl-tRNA synthetases
    • 11310981 1:CAS:528:DC%2BD3cXotV2jtbc%3D
    • Szymanski M, Deniziak M, Barciszewski J (2000) The new aspects of aminoacyl-tRNA synthetases. Acta Biochim Pol 47:821-834
    • (2000) Acta Biochim Pol , vol.47 , pp. 821-834
    • Szymanski, M.1    Deniziak, M.2    Barciszewski, J.3
  • 50
    • 0030765546 scopus 로고    scopus 로고
    • Human lymphocyte X-prolyl aminopeptidase (aminopeptidase P)-like protein. A new member of the proline peptidase family?
    • 9330676 1:STN:280:DyaK2svntFOgtw%3D%3D
    • Vanhoof G, Goossens F, Juliano MA, Juliano L, De Meester I, Hendriks D, Schatteman K, Scharpe S (1997) Human lymphocyte X-prolyl aminopeptidase (aminopeptidase P)-like protein. A new member of the proline peptidase family? Adv Exp Med Biol 421:25-29
    • (1997) Adv Exp Med Biol , vol.421 , pp. 25-29
    • Vanhoof, G.1    Goossens, F.2    Juliano, M.A.3    Juliano, L.4    De Meester, I.5    Hendriks, D.6    Schatteman, K.7    Scharpe, S.8
  • 51
    • 0034720002 scopus 로고    scopus 로고
    • Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes
    • 11015593 1:CAS:528:DC%2BD3cXltFKns70%3D
    • Warrington JA, Nair A, Mahadevappa M, Tsyganskaya M (2000) Comparison of human adult and fetal expression and identification of 535 housekeeping/ maintenance genes. Physiol Genomics 2:143-147
    • (2000) Physiol Genomics , vol.2 , pp. 143-147
    • Warrington, J.A.1    Nair, A.2    Mahadevappa, M.3    Tsyganskaya, M.4
  • 52
    • 33646197928 scopus 로고    scopus 로고
    • Rosetta error model for gene expression analysis
    • 16522673 10.1093/bioinformatics/btl045 1:CAS:528:DC%2BD28XjslKrsbg%3D
    • Weng L, Dai H, Zhan Y, He Y, Stepaniants SB, Bassett DE (2006) Rosetta error model for gene expression analysis. Bioinformatics 22:1111-1121
    • (2006) Bioinformatics , vol.22 , pp. 1111-1121
    • Weng, L.1    Dai, H.2    Zhan, Y.3    He, Y.4    Stepaniants, S.B.5    Bassett, D.E.6
  • 53
    • 0037194894 scopus 로고    scopus 로고
    • A novel protein complex linking the delta 2 glutamate receptor and autophagy: Implications for neurodegeneration in lurcher mice
    • 12372286 10.1016/S0896-6273(02)00861-9 1:CAS:528:DC%2BD38XntFSksrw%3D
    • Yue Z, Horton A, Bravin M, DeJager PL, Selimi F, Heintz N (2002) A novel protein complex linking the delta 2 glutamate receptor and autophagy: implications for neurodegeneration in lurcher mice. Neuron 35:921-933
    • (2002) Neuron , vol.35 , pp. 921-933
    • Yue, Z.1    Horton, A.2    Bravin, M.3    Dejager, P.L.4    Selimi, F.5    Heintz, N.6
  • 54
    • 44349158988 scopus 로고    scopus 로고
    • How many human genes can be defined as housekeeping with current expression data?
    • 18416810 10.1186/1471-2164-9-172
    • Zhu J, He F, Song S, Wang J, Yu J (2008) How many human genes can be defined as housekeeping with current expression data? BMC Genomics 9:172
    • (2008) BMC Genomics , vol.9 , pp. 172
    • Zhu, J.1    He, F.2    Song, S.3    Wang, J.4    Yu, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.