A compendium of gene expression in normal human tissues

Physiological Genomics

Volumn 2002, Issue 7, 2002, Pages 97-104

  Hsiao, Li Li ^a   Dangond, Fernando ^a   Yoshida, Takumi ^a   Hong, Robert ^a   Jensen, Roderick V ^b   Misra, Jatin ^c   Dillon, William ^a   Lee, Kailin F ^a   Clark, Kathryn E ^a   Haverty, Peter ^d   Weng, Zhiping ^e   Mutter, George L ^f   Frosch, Matthew P ^a   MacDonald, Marcy E ^g   Milford, Edgar L ^a   Crum, Christopher P ^f   Bueno, Raphael ^f   Pratt, Richard E ^f   Mahadevappa, Mamatha ^h   Warrington, Janet A ^h   Stephanopoulos, Gregory ^c   Stephanopoulos, George ^c   Gullans, Steven R ^a,i   more..

^a HARVARD MEDICAL SCHOOL   (United States)

^b WESLEYAN UNIVERSITY   (United States)

^c Massachusetts Institute of Technology Cambridge   (United States)

^d BOSTON UNIVERSITY   (United States)

^e Boston University   (United States)

^f BRIGHAM AND WOMEN S HOSPITAL   (United States)

^g MASSACHUSETTS GENERAL HOSPITAL   (United States)

^h Thermo Fisher Scientific   (United States)

ⁱ NONE   (United States)

Author keywords

Bioinformatics; Gene expression; Human tissues; Microarrays

Indexed keywords

ANTIBODY SPECIFICITY; ARTICLE; BIOLOGY; CLUSTER ANALYSIS; DNA MICROARRAY; FEMALE; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETIC DATABASE; GENETIC VARIABILITY; GENETICS; HUMAN; INTERNET; MALE; MIDDLE AGED; REFERENCE VALUE; STANDARD;

CLUSTER ANALYSIS; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; FEMALE; GENE EXPRESSION; GENE EXPRESSION PROFILING; HUMANS; INTERNET; MALE; MIDDLE AGED; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; ORGAN SPECIFICITY; REFERENCE VALUES; VARIATION (GENETICS);

EID: 0035931072     PISSN: 15312267     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (41)

1. Adams MD, Kerlavage AR, Fleischmann RD, Fuldner RA, Bult CJ, Lee NH, Kirkness EF, Weinstock KG, Gocayne JD, White O, and et al. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Nature 377: 3-174, 1995.
2. Alaiya AA, Franzen B, Hagman A, Silfversward C, Moberger B, Linder S, and Auer G. Classification of human ovarian tumors using multivariate data analysis of polypeptide expression patterns. Int J Cancer 86: 731-736, 2000.
3. Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, Boldrick JC, Sabet H, Tran T, Yu X, Powell JI, Yang L, Marti GE, Moore T, Hudson J Jr, Lu L, Lewis DB, Tibshirani R, Sherlock G, Chan WC, Greiner TC, Weisenburger DD, Armitage JO, Warnke R, Levy R, Wilson W, Grever MR, Byrd JC, Botstein D, Brown PD, and Staudt LM. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403: 503-511, 2000.
4. Ameshima S, Ishizaki T, Demura Y, Imamura Y, Miyamori I, and Mitsuhashi H. Increased secretory leukoprotease inhibitor in patients with nonsmall cell lung carcinoma. Cancer 89: 1448-1456, 2000.
5. Bubendorf L, Kolmer M, Kononen J, Koivisto P, Mousses S, Chen Y, Mahlamaki E, Schraml P, Moch H, Willi N, Elkahloun AG, Pretlow TG, Gasser TC, Mihatsch MJ, Sauter G, and Kallioniemi OP. Hormone therapy failure in human prostate cancer: analysis by complementary DNA and tissue microarrays. J Natl Cancer Inst 91: 1758-1764, 1999.
6. Camp RL, Charette LA, and Rimm DL. Validation of tissue microarray technology in breast carcinoma. Lab Invest 80: 1943-1949, 2000.
7. Celera Genomics. The sequence of the human genome. Science 291: 1304-1351, 2001.
8. - by the thiazide-inhibitable transporter of the distal convoluted tubule in Gitelman's syndrome. Am J Nephrol 17: 103-111, 1997.
9. Consortium of the IHGS. Initial sequencing and analysis of the human genome. Nature 409: 813-958, 2001.
10. Devedjian JC, George M, Casellas A, Pujol A, Visa J, Pelegrin M, Gros L, and Bosch F. Transgenic mice overexpressing insulin-like growth factor-II in beta cells develop type 2 diabetes. J Clin Invest 105: 731-740, 2000.
11. Dunlop M. Aldose reductase and the role of the polyol pathway in diabetic nephropathy. Kidney Int 58, Suppl 77: S3-S12, 2000.
12. Elek J, Park KH, and Narayanan R. Microarray-based expression profiling in prostate tumors. In Vivo 14:173-182, 2000.
13. Frystyk J, Skjaerbaek C, Vestbo E, Fisker S, and Orskov H. Circulating levels of free insulin-like growth factors in obese subjects: the impact of type 2 diabetes. Diabetes Metab Res Rev 15: 314-322, 1999.
14. Glynne R, Akkaraju S, Healy JI, Rayner J, Goodnow CC, and Mack DH. How self-tolerance and the immunosuppressive drug FK506 prevent B-cell mitogenesis. Nature 403: 672-676, 2000.
15. Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh ML, Downing JR, Caligiuri MA, Bloomfield CD, and Lander ES. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286: 531-537, 1999.
16. Gray JW and Collins C. Genome changes and gene expression in human solid tumors. Carcinogenesis 21: 443-452, 2000.
17. Harris ES, Shigeoka AO, Li W, Adams RH, Prescott SM, McIntyre TM, Zimmerman GA, and Lorant DE. A novel syndrome of variant leukocyte adhesion deficiency involving defects in adhesion mediated by beta(1) and beta(2) integrins. Blood 97: 767-776, 2001.
18. Heller F, Descamps O, Hondekijn JC, and Desager JP. Atorvastatin and low-density lipoprotein subfractions profile in mixed hyperlipidaemia: a contributory effect of reduced hepatic lipase activity? Ann Clin Biochem 36: 788-789, 1999.
19. Heller RA, Schena M, Chai A, Shalon D, Bedilion T, Gilmore J, Woolley DE, and Davis RW. Discovery and analysis of inflammatory disease-related genes using cDNA microarrays. Proc Natl Acad Sci USA 94: 2150-2155, 1997.
20. Hilz MJ, Marthol H, and Neundorfer B. Diabetic somatic polyneuropathy. Pathogenesis, clinical manifestations and therapeutic concepts. Fortschr Neurol Psychiatr 68: 278-288, 2000.
21. Hogg N, Stewart MP, Scarth SL, Newton R, Shaw JM, Law SK, and Klein N. A novel leukocyte adhesion deficiency caused by expressed but nonfunctional β2 integrins Mac-1 and LFA-1. J Clin Invest 103: 97-106, 1999.
22. Kauffman L and Rouseeuw PJ. Finding Groups in Data. New York: Wiley, 1990.
23. Khan J, Simon R, Bittner M, Chen Y, Leighton SB, Pohida T, Smith PD, Jiang Y, Gooden GC, Trent JM, and Meltzer PS. Gene expression profiling of alveolar rhabdomyosarcoma with cDNA microarrays. Cancer Res 58: 5009-5013, 1998.
24. Krozowski Z, MaGuire JA, Stein-Oakley AN, Dowling J, Smith RE, and Andrews RK. Immunohistochemical localization of the 11β-hydroxysteroid dehydrogenase type II enzyme in human kidney and placenta. J Clin Endocrinol Metab 80: 2203-2209, 1995.
25. Lockhart DJ, Dong H, Byrne MC, Follettie MT, Gallo MV, Chee MS, Mittmann M, Wang C, Kobayashi M, Horton H, and Brown EL. Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat Biotechnol 14: 1675-1680, 1996.
26. Marchi R, Lundberg U, Grimbergen J, Koopman J, Torres A, de Bosch NB, Haverkate F, and Arocha Pinango CL. Fibrinogen Caracas V, an abnormal fibrinogen with an Aalpha 532-Ser→Cys substitution associated with thrombosis. Thromb Haemost 84: 263-270, 2000.
27. Marchi R, Mirshahi SS, Soria C, Mirshahi M, Zohar M, Collet JP, de Bosch NB, Arocha-Pinango CL, and Soria J. Thrombotic dysfibrinogenemia. Fibrinogen "Caracas V" relation between very tight fibrin network and defective clot degradability. Thromb Res 99: 187-193, 2000.
28. Moch H, Schraml P, Bubendorf L, Mirlacher M, Kononen J, Gasser T, Mihatsch MJ, Kallioniemi OP, and Sauter G. Identification of prognostic parameters for renal cell carcinoma by cDNA arrays and cell chips. Verh Dtsch Ges Pathol 83: 225-232, 1999.
29. Nishikawa T, Edelstein D, and Brownlee M. The missing link: a single unifying mechanism for diabetic complications. Kidney Int 58, Suppl 77: S26-S30, 2000.
30. Nishimura C, Matsuura Y, Kokai Y, Akera T, Carper D, Morjana N, Lyons C, and Flynn TG. Cloning and expression of human aldose reductase. J Biol Chem 265: 9788-9792, 1990.
31. Obrosova IG and Fathallah L. Evaluation of an aldose reductase inhibitor on lens metabolism, ATPases and antioxidative defense in streptozotocin-diabetic rats: an intervention study. Diabetologia 43: 1048-1055, 2000.
32. O'Dell SD, Bujac SR, Miller GJ, and Day IN. Associations of IGF2 ApaI RFLP and INS VNTR class I allele size with obesity. Eur J Hum Genet 7: 821-827, 1999.
33. Pihlajamaki J, Karjalainen L, Karhapaa P, Vauhkonen I, Taskinen MR, Deeb SS, and Laakso M. G-250A substitution in promoter of hepatic lipase gene is associated with dyslipidemia and insulin resistance in healthy control subjects and in members of families with familial combined hyperlipidemia. Arterioscler Thromb Vasc Biol 20: 1789-1795, 2000.
34. Rice JA. Mathematical Statistics and Data Analysis (2nd ed.). Belmont, CA: Duxbury Press, 1995.
35. Sallenave JM, Donnelly SC, Grant IS, Robertson C, Gauldie J, and Haslett C. Secretory leukocyte proteinase inhibitor is preferentially increased in patients with acute respiratory distress syndrome. Eur Respir J 13: 1029-1036, 1999.
36. Simon DB, Nelson-Williams C, Bia MJ, Ellison D, Karet FE, Molina AM, Vaara I, Iwata F, Cushner HM, Koolen M, Gainza FJ, Gitleman HJ, and Lifton RP. Gitelman's variant of Bartter's syndrome, inherited hypokalaemic alkalosis, is caused by mutations in the thiazide-sensitive Na-Cl cotransporter. Nat Genet 12: 24-30, 1996.
37. Venables WN and Ripley BD. Modern Applied Statistics with S-Plus (2nd ed.). New York: Springer, 1997.
38. Wang K, Gan L, Jeffery E, Gayle M, Gown AM, Skelly M, Nelson PS, Ng WV, Schummer M, Hood L, and Mulligan J. Monitoring gene expression profile changes in ovarian carcinomas using cDNA microarray. Gene 229: 101-108, 1999.
39. Warrington JA, Nair A, Mahadevappa M, and Tsyganskaya M. Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes. Physiol Genomics 2: 143-147, 2000.
40. Watson JD, Hopkins NH, Roberts JW, Steitz JA, and Weiner AM. Molecular Biology of the Gene (4th ed.). Benjamin/ Cummings, 1987, vol. 1, p. 704.
41. Whitney LW, Becker KG, Tresser NJ, Caballero-Ramos CI, Munson PJ, Prabhu W, Trent JM, McFarland HF, and Biddison WE. Analysis of gene expression in multiple sclerosis lesions using cDNA microarrays. Ann Neurol 46: 425-428, 1999.