-
1
-
-
79952131874
-
Impact of high-throughput screening in biomedical research
-
Macarron, R.; Banks, M. N.; Bojanic, D.; Burns, D. J.; Cirovic, D. A.; Garyantes, T.; Green, D. V.; Hertzberg, R. P.; Janzen, W. P.; Paslay, J. W.; Schopfer, U.; Sittampalam, G. S. Impact of high-throughput screening in biomedical research Nat. Rev. Drug Discovery 2011, 10, 188-195
-
(2011)
Nat. Rev. Drug Discovery
, vol.10
, pp. 188-195
-
-
MacArron, R.1
Banks, M.N.2
Bojanic, D.3
Burns, D.J.4
Cirovic, D.A.5
Garyantes, T.6
Green, D.V.7
Hertzberg, R.P.8
Janzen, W.P.9
Paslay, J.W.10
Schopfer, U.11
Sittampalam, G.S.12
-
2
-
-
70349482953
-
Novel trends in high-throughput screening
-
Mayr, L. M.; Bojanic, D. Novel trends in high-throughput screening Curr. Opin. Pharmacol. 2009, 9, 580-588
-
(2009)
Curr. Opin. Pharmacol.
, vol.9
, pp. 580-588
-
-
Mayr, L.M.1
Bojanic, D.2
-
3
-
-
42449106583
-
Which aspects of HTS are empirically correlated with downstream success?
-
Bender, A.; Bojanic, D.; Davies, J. W.; Crisman, T. J.; Mikhailov, D.; Scheiber, J.; Jenkins, J. L.; Deng, Z.; Hill, W. A.; Popov, M.; Jacoby, E.; Glick, M. Which aspects of HTS are empirically correlated with downstream success? Curr. Opin. Drug Discovery Devel. 2008, 11, 327-337 (Pubitemid 351572442)
-
(2008)
Current Opinion in Drug Discovery and Development
, vol.11
, Issue.3
, pp. 327-337
-
-
Bender, A.1
Bojanic, D.2
Davies, J.W.3
Crisman, T.J.4
Mikhailov, D.5
Scheiber, J.6
Jenkins, J.L.7
Deng, Z.8
Hill, W.A.G.9
Popov, M.10
Jacoby, E.11
Glick, M.12
-
4
-
-
12844283957
-
High-throughput drug discovery: What can we expect from HTS?
-
DOI 10.1016/S1359-6446(04)03275-1, PII S1359644604032751
-
Gribbon, P.; Sewing, A. High-throughput drug discovery: What can we expect from HTS? Drug Discovery Today 2005, 10, 17-22 (Pubitemid 40164815)
-
(2005)
Drug Discovery Today
, vol.10
, Issue.1
, pp. 17-22
-
-
Gribbon, P.1
Andreas, S.2
-
5
-
-
33745188660
-
Screening in a spirit haunted world
-
Shoichet, B. K. Screening in a spirit haunted world Drug Discovery Today 2006, 11, 607-615
-
(2006)
Drug Discovery Today
, vol.11
, pp. 607-615
-
-
Shoichet, B.K.1
-
6
-
-
46749105500
-
The impact of diversity-based, high-throughput screening on drug discovery: "Chance favours the prepared mind"
-
Snowden, M.; Green, D. V. The impact of diversity-based, high-throughput screening on drug discovery: "Chance favours the prepared mind" Curr. Opin. Drug Discovery Dev. 2008, 11, 553-558 (Pubitemid 351950849)
-
(2008)
Current Opinion in Drug Discovery and Development
, vol.11
, Issue.4
, pp. 553-558
-
-
Snowden, M.1
Green, D.V.S.2
-
7
-
-
0035369725
-
Miniaturized HTS technologies - uHTS
-
DOI 10.1016/S1359-6446(01)01807-4, PII S1359644601018074
-
Wölcke, J.; Ullmann, D. Miniaturized HTS technologies-uHTS Drug Discovery Today 2001, 6, 637-646 (Pubitemid 32567622)
-
(2001)
Drug Discovery Today
, vol.6
, Issue.12
, pp. 637-646
-
-
Wolcke, J.1
Ullmann, D.2
-
8
-
-
48749127628
-
What has virtual screening ever done for drug discovery?
-
Clark, D. E. What has virtual screening ever done for drug discovery? Exp. Opin. Drug Discovery 2008, 3, 841-851
-
(2008)
Exp. Opin. Drug Discovery
, vol.3
, pp. 841-851
-
-
Clark, D.E.1
-
9
-
-
65549108234
-
Virtual screening: What does it give us?
-
Koppen, H. Virtual screening: What does it give us? Curr. Opin. Drug Discovery Dev. 2009, 12, 397-407
-
(2009)
Curr. Opin. Drug Discovery Dev.
, vol.12
, pp. 397-407
-
-
Koppen, H.1
-
10
-
-
47049121577
-
How large does a compound screening collection need to be?
-
DOI 10.2174/138620708784911492
-
Lipkin, M. J.; Stevens, A. P.; Livingstone, D. J.; Harris, C. J. How large does a compound screening collection need to be? Comb. Chem. High Throughput Screening 2008, 11, 482-493 (Pubitemid 351969365)
-
(2008)
Combinatorial Chemistry and High Throughput Screening
, vol.11
, Issue.6
, pp. 482-493
-
-
Lipkin, M.J.1
Stevens, A.P.2
Livingstone, D.J.3
Harris, C.J.4
-
11
-
-
77950503976
-
Virtual screening: An endless staircase?
-
Schneider, G. Virtual screening: an endless staircase? Nat. Rev. Drug Discovery 2010, 9, 273-276
-
(2010)
Nat. Rev. Drug Discovery
, vol.9
, pp. 273-276
-
-
Schneider, G.1
-
12
-
-
70349433676
-
Hit finding: Towards 'smarter' approaches
-
Langer, T.; Hoffmann, R.; Bryant, S.; Lesur, B. Hit finding: towards 'smarter' approaches Curr. Opin. Pharmacol. 2009, 9, 589-593
-
(2009)
Curr. Opin. Pharmacol.
, vol.9
, pp. 589-593
-
-
Langer, T.1
Hoffmann, R.2
Bryant, S.3
Lesur, B.4
-
13
-
-
33746058237
-
Streamlining lead discovery by aligning in silico and high-throughput screening
-
DOI 10.1016/j.cbpa.2006.06.022, PII S136759310600086X, Next-Generation Therapeutics
-
Davies, J. W.; Glick, M.; Jenkins, J. L. Streamlining lead discovery by aligning in silico and high-throughput screening Curr. Opin. Chem. Biol. 2006, 10, 343-351 (Pubitemid 44080652)
-
(2006)
Current Opinion in Chemical Biology
, vol.10
, Issue.4
, pp. 343-351
-
-
Davies, J.W.1
Glick, M.2
Jenkins, J.L.3
-
14
-
-
33745859416
-
Methods for mining HTS data
-
DOI 10.1016/j.drudis.2006.06.006, PII S1359644606002133
-
Harper, G.; Pickett, S. D. Methods for mining HTS data Drug Discovery Today 2006, 11, 694-699 (Pubitemid 44038624)
-
(2006)
Drug Discovery Today
, vol.11
, Issue.15-16
, pp. 694-699
-
-
Harper, G.1
Pickett, S.D.2
-
15
-
-
70350495649
-
Enhanced HTS hit selection via a local hit rate analysis
-
Posner, B. A.; Xi, H.; Mills, J. E. Enhanced HTS hit selection via a local hit rate analysis J. Chem. Inf. Model. 2009, 49, 2202-2210
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 2202-2210
-
-
Posner, B.A.1
Xi, H.2
Mills, J.E.3
-
16
-
-
78650703690
-
Compound set enrichment: A novel approach to analysis of primary HTS data
-
Varin, T.; Gubler, H.; Parker, C. N.; Zhang, J. H.; Raman, P.; Ertl, P.; Schuffenhauer, A. Compound set enrichment: A novel approach to analysis of primary HTS data J. Chem. Inf. Model. 2010, 50, 2067-2078
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 2067-2078
-
-
Varin, T.1
Gubler, H.2
Parker, C.N.3
Zhang, J.H.4
Raman, P.5
Ertl, P.6
Schuffenhauer, A.7
-
17
-
-
84856854230
-
Latent hit series hidden in high-throughput screening data
-
Varin, T.; Didiot, M. C.; Parker, C. N.; Schuffenhauer, A. Latent hit series hidden in high-throughput screening data J. Med. Chem. 2012, 55, 1161-1170
-
(2012)
J. Med. Chem.
, vol.55
, pp. 1161-1170
-
-
Varin, T.1
Didiot, M.C.2
Parker, C.N.3
Schuffenhauer, A.4
-
18
-
-
33749598013
-
Cheminformatics analysis and learning in a data pipelining environment
-
DOI 10.1007/s11030-006-9041-5
-
Hassan, M.; Brown, R.; Varma-O'Brien, S.; Rogers, D. Cheminformatics analysis and learning in a data pipelining environment Mol. Divers. 2006, 10, 283-299 (Pubitemid 44546683)
-
(2006)
Molecular Diversity
, vol.10
, Issue.3
, pp. 283-299
-
-
Hassan, M.1
Brown, R.D.2
Varma-O'Brien, S.3
Rogers, D.4
-
19
-
-
24144468145
-
Post-high-throughput screening analysis: An empirical compound prioritization scheme
-
DOI 10.1177/1087057104272660
-
Oprea, T. I.; Bologa, C. G.; Edwards, B. S.; Prossnitz, E. R.; Sklar, L. A. Post-high-throughput screening analysis: an empirical compound prioritization scheme J. Biomol. Screening 2005, 10, 419-426 (Pubitemid 41233220)
-
(2005)
Journal of Biomolecular Screening
, vol.10
, Issue.5
, pp. 419-426
-
-
Oprea, T.I.1
Bologa, C.G.2
Edwards, B.S.3
Prossnitz, E.R.4
Sklar, L.A.5
-
20
-
-
13344275781
-
Fast similarity searching and screening hit analysis
-
DOI 10.1016/j.ddtec.2004.11.001, PII S1740674904000496
-
Baringhaus, K. H.; Hessler, G. Fast similarity searching and screening hit analysis Drug Discovery Today: Technol 2004, 1, 197-202 (Pubitemid 40197567)
-
(2004)
Drug Discovery Today: Technologies
, vol.1
, Issue.3
, pp. 197-202
-
-
Baringhaus, K.-H.1
Hessler, G.2
-
21
-
-
12144283651
-
Hit-directed nearest-neighbor searching
-
DOI 10.1021/jm0493515
-
Shanmugasundaram, V.; Maggiora, G. M.; Lajiness, M. S. Hit-directed nearest-neighbor searching J. Med. Chem. 2005, 48, 240-248 (Pubitemid 40105262)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.1
, pp. 240-248
-
-
Shanmugasundaram, V.1
Maggiora, G.M.2
Lajiness, M.S.3
-
22
-
-
79961000103
-
The role of computational methods in the identification of bioactive compounds
-
Glick, M.; Jacoby, E. The role of computational methods in the identification of bioactive compounds Curr. Opin. Chem. Biol. 2011, 15, 540-546
-
(2011)
Curr. Opin. Chem. Biol.
, vol.15
, pp. 540-546
-
-
Glick, M.1
Jacoby, E.2
-
23
-
-
35348821202
-
Virtual screening strategies in drug discovery
-
DOI 10.1016/j.cbpa.2007.08.033, PII S1367593107001172
-
McInnes, C. Virtual screening strategies in drug discovery Curr. Opin. Chem. Biol. 2007, 11, 494-502 (Pubitemid 47589008)
-
(2007)
Current Opinion in Chemical Biology
, vol.11
, Issue.5
, pp. 494-502
-
-
McInnes, C.1
-
24
-
-
33846487854
-
Advances in virtual screening
-
DOI 10.1016/j.ddtec.2006.12.002, PII S1740674906000758
-
Muegge, I.; Oloff, S. Advances in virtual screening Drug Discovery Today: Technol 2006, 3, 405-411 (Pubitemid 46164322)
-
(2006)
Drug Discovery Today: Technologies
, vol.3
, Issue.4
, pp. 405-411
-
-
Muegge, I.1
Oloff, S.2
-
25
-
-
46749095500
-
From virtuality to reality - Virtual screening in lead discovery and lead optimization: A medicinal chemistry perspective
-
Rester, U. From virtuality to reality-Virtual screening in lead discovery and lead optimization: A medicinal chemistry perspective Curr. Opin. Drug Discovery Dev. 2008, 11, 559-568 (Pubitemid 351950850)
-
(2008)
Current Opinion in Drug Discovery and Development
, vol.11
, Issue.4
, pp. 559-568
-
-
Rester, U.1
-
26
-
-
78650352933
-
Quo vadis, virtual screening? A comprehensive survey of prospective applications
-
Ripphausen, P.; Nisius, B.; Peltason, L.; Bajorath, J. Quo vadis, virtual screening? A comprehensive survey of prospective applications J. Med. Chem. 2010, 53, 8461-8467
-
(2010)
J. Med. Chem.
, vol.53
, pp. 8461-8467
-
-
Ripphausen, P.1
Nisius, B.2
Peltason, L.3
Bajorath, J.4
-
27
-
-
32444441360
-
Computational chemistry-driven decision making in lead generation
-
DOI 10.1016/S1359-6446(05)03703-7, PII S1359644605037037
-
Schnecke, V.; Bostrom, J. Computational chemistry-driven decision making in lead generation Drug Discovery Today 2006, 11, 43-50 (Pubitemid 43227851)
-
(2006)
Drug Discovery Today
, vol.11
, Issue.1-2
, pp. 43-50
-
-
Schnecke, V.1
Bostrom, J.2
-
28
-
-
84862027743
-
Recognizing pitfalls in virtual screening: A critical review
-
Scior, T.; Bender, A.; Tresadern, G.; Medina-Franco, J. L.; Martinez-Mayorga, K.; Langer, T.; Cuanalo-Contreras, K.; Agrafiotis, D. K. Recognizing pitfalls in virtual screening: A critical review J. Chem. Inf. Model. 2012, 52, 867-881
-
(2012)
J. Chem. Inf. Model.
, vol.52
, pp. 867-881
-
-
Scior, T.1
Bender, A.2
Tresadern, G.3
Medina-Franco, J.L.4
Martinez-Mayorga, K.5
Langer, T.6
Cuanalo-Contreras, K.7
Agrafiotis, D.K.8
-
29
-
-
33745199815
-
Virtual ligand screening: Strategies, perspectives and limitations
-
Klebe, G. Virtual ligand screening: Strategies, perspectives and limitations Drug Discovery Today 2006, 11, 580-594
-
(2006)
Drug Discovery Today
, vol.11
, pp. 580-594
-
-
Klebe, G.1
-
30
-
-
40649094486
-
Towards improving compound selection in structure-based virtual screening
-
Waszkowycz, B. Towards improving compound selection in structure-based virtual screening Drug Discovery Today 2008, 13, 219-226
-
(2008)
Drug Discovery Today
, vol.13
, pp. 219-226
-
-
Waszkowycz, B.1
-
31
-
-
79956024935
-
State-of-the-art in ligand-based virtual screening
-
Ripphausen, P.; Nisius, B.; Bajorath, J. State-of-the-art in ligand-based virtual screening Drug Discovery Today 2011, 16, 372-376
-
(2011)
Drug Discovery Today
, vol.16
, pp. 372-376
-
-
Ripphausen, P.1
Nisius, B.2
Bajorath, J.3
-
33
-
-
0029783934
-
Neighborhood behavior: A useful concept for validation of 'molecular diversity' descriptors
-
DOI 10.1021/jm960290n
-
Patterson, D. E.; Cramer, R. D.; Ferguson, A. M.; Clark, R. D.; Weinberger, L. E. Neighborhood behavior: A useful concept for validation of "molecular diversity" descriptors J. Med. Chem. 1996, 39, 3049-3059 (Pubitemid 26260310)
-
(1996)
Journal of Medicinal Chemistry
, vol.39
, Issue.16
, pp. 3049-3059
-
-
Patterson, D.E.1
Cramer, R.D.2
Ferguson, A.M.3
Clark, R.D.4
Weinberger, L.E.5
-
34
-
-
84942926254
-
Molecular Variations Based on Isosteric Replacements
-
In, 2 nd ed. Wermuth, C. G. Academic Press: London
-
Wermuth, C. G. Molecular Variations Based on Isosteric Replacements. In The Practice of Medicinal Chemistry, 2 nd ed.; Wermuth, C. G., Ed.; Academic Press: London, 2003; pp 189-214.
-
(2003)
The Practice of Medicinal Chemistry
, pp. 189-214
-
-
Wermuth, C.G.1
-
35
-
-
34249086830
-
In silico identification of bioisosteric functional groups
-
Ertl, P. In silico identification of bioisosteric functional groups Curr. Opin. Drug Discovery Dev. 2007, 10, 281-288 (Pubitemid 46800222)
-
(2007)
Current Opinion in Drug Discovery and Development
, vol.10
, Issue.3
, pp. 281-288
-
-
Ertl, P.1
-
36
-
-
44949151490
-
ParaFrag - An approach for surface-based similarity comparison of molecular fragments
-
Jakobi, A. J.; Mauser, H.; Clark, T. ParaFrag-An approach for surface-based similarity comparison of molecular fragments J. Mol. Model. 2008, 14, 547-558
-
(2008)
J. Mol. Model.
, vol.14
, pp. 547-558
-
-
Jakobi, A.J.1
Mauser, H.2
Clark, T.3
-
37
-
-
0036025428
-
The most common chemical replacements in drug-like compounds
-
DOI 10.1021/ci0100806
-
Sheridan, R. P. The most common chemical replacements in drug-like compounds J. Chem. Inf. Comput. Sci. 2002, 42, 103-108 (Pubitemid 35355330)
-
(2002)
Journal of Chemical Information and Computer Sciences
, vol.42
, Issue.1
, pp. 103-108
-
-
Sheridan, R.P.1
-
38
-
-
33646237557
-
The quest for bioisosteric replacements
-
Wagener, M.; Lommerse, J. P. The quest for bioisosteric replacements J. Chem. Inf. Model. 2006, 46, 677-685
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 677-685
-
-
Wagener, M.1
Lommerse, J.P.2
-
39
-
-
84875459673
-
SwissBioisostere: A database of molecular replacements for ligand design
-
Wirth, M.; Zoete, V.; Michielin, O.; Sauer, W. H. SwissBioisostere: A database of molecular replacements for ligand design Nucleic Acids Res. 2013, 41, D1137-D1143
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Wirth, M.1
Zoete, V.2
Michielin, O.3
Sauer, W.H.4
-
40
-
-
33847207834
-
Molecular similarity analysis in virtual screening: Foundations, limitations and novel approaches
-
Eckert, H.; Bajorath, J. Molecular similarity analysis in virtual screening: foundations, limitations and novel approaches Drug Discovery Today 2007, 12, 225-233
-
(2007)
Drug Discovery Today
, vol.12
, pp. 225-233
-
-
Eckert, H.1
Bajorath, J.2
-
41
-
-
77249106566
-
Three-dimensional pharmacophore methods in drug discovery
-
Leach, A. R.; Gillet, V. J.; Lewis, R. A.; Taylor, R. Three-dimensional pharmacophore methods in drug discovery J. Med. Chem. 2010, 53, 539-558
-
(2010)
J. Med. Chem.
, vol.53
, pp. 539-558
-
-
Leach, A.R.1
Gillet, V.J.2
Lewis, R.A.3
Taylor, R.4
-
42
-
-
27544441634
-
Enhancing the effectiveness of similarity-based virtual screening using nearest-neighbor information
-
DOI 10.1021/jm050316n
-
Hert, J.; Willett, P.; Wilton, D. J.; Acklin, P.; Azzaoui, K.; Jacoby, E.; Schuffenhauer, A. Enhancing the effectiveness of similarity-based virtual screening using nearest-neighbor information J. Med. Chem. 2005, 48, 7049-7054 (Pubitemid 41534671)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.22
, pp. 7049-7054
-
-
Hert, J.1
Willett, P.2
Wilton, D.J.3
Acklin, P.4
Azzaoui, K.5
Jacoby, E.6
Schuffenhauer, A.7
-
43
-
-
33751246188
-
Similarity-based virtual screening using 2D fingerprints
-
DOI 10.1016/j.drudis.2006.10.005, PII S1359644606004193
-
Willett, P. Similarity-based virtual screening using 2D fingerprints Drug Discovery Today 2006, 11, 1046-1053 (Pubitemid 44792477)
-
(2006)
Drug Discovery Today
, vol.11
, Issue.23-24
, pp. 1046-1053
-
-
Willett, P.1
-
44
-
-
67650086695
-
Use of reduced graphs to encode bioisosterism for similarity-based virtual screening
-
Birchall, K.; Gillet, V. J.; Willett, P.; Ducrot, P.; Luttmann, C. Use of reduced graphs to encode bioisosterism for similarity-based virtual screening J. Chem. Inf. Model. 2009, 49, 1330-1346
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 1330-1346
-
-
Birchall, K.1
Gillet, V.J.2
Willett, P.3
Ducrot, P.4
Luttmann, C.5
-
45
-
-
0032149905
-
Feature trees: A new molecular similarity measure based on tree matching
-
Rarey, M.; Dixon, J. S. Feature trees: A new molecular similarity measure based on tree matching J. Comput.-Aided Mol. Des 1998, 12, 471-490 (Pubitemid 128512818)
-
(1998)
Journal of Computer-Aided Molecular Design
, vol.12
, Issue.5
, pp. 471-490
-
-
Rarey, M.1
Dixon, J.S.2
-
46
-
-
84878166087
-
-
version 1.0.4. DiscNgine: Romainville, France.
-
DiscNgine, version 1.0.4. DiscNgine: Romainville, France, 2012.
-
(2012)
DiscNgine
-
-
-
47
-
-
65249167560
-
ShaEP: Molecular overlay based on shape and electrostatic potential
-
Vainio, M. J.; Puranen, J. S.; Johnson, M. S. ShaEP: Molecular overlay based on shape and electrostatic potential J. Chem. Inf. Model. 2009, 49, 492-502
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 492-502
-
-
Vainio, M.J.1
Puranen, J.S.2
Johnson, M.S.3
-
48
-
-
77952716960
-
Molecular shape and medicinal chemistry: A perspective
-
Nicholls, A.; McGaughey, G. B.; Sheridan, R. P.; Good, A. C.; Warren, G.; Mathieu, M.; Muchmore, S. W.; Brown, S. P.; Grant, J. A.; Haigh, J. A.; Nevins, N.; Jain, A. N.; Kelley, B. Molecular shape and medicinal chemistry: a perspective J. Med. Chem. 2010, 53, 3862-3886
-
(2010)
J. Med. Chem.
, vol.53
, pp. 3862-3886
-
-
Nicholls, A.1
McGaughey, G.B.2
Sheridan, R.P.3
Good, A.C.4
Warren, G.5
Mathieu, M.6
Muchmore, S.W.7
Brown, S.P.8
Grant, J.A.9
Haigh, J.A.10
Nevins, N.11
Jain, A.N.12
Kelley, B.13
-
49
-
-
84878171930
-
-
version 3.1.2. Open Eye Scientific Software: Santa Fe, NM.
-
ROCS, version 3.1.2. Open Eye Scientific Software: Santa Fe, NM, 2013.
-
(2013)
ROCS
-
-
-
50
-
-
0036740917
-
Why do we need so many chemical similarity search methods?
-
Sheridan, R. P.; Kearsley, S. K. Why do we need so many chemical similarity search methods? Drug Discovery Today 2002, 7, 903-911
-
(2002)
Drug Discovery Today
, vol.7
, pp. 903-911
-
-
Sheridan, R.P.1
Kearsley, S.K.2
-
51
-
-
61949166066
-
How similar are similarity searching methods? A principal component analysis of molecular descriptor space
-
Bender, A.; Jenkins, J. L.; Scheiber, J.; Sukuru, S. C.; Glick, M.; Davies, J. W. How similar are similarity searching methods? A principal component analysis of molecular descriptor space J. Chem. Inf. Model. 2009, 49, 108-119
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 108-119
-
-
Bender, A.1
Jenkins, J.L.2
Scheiber, J.3
Sukuru, S.C.4
Glick, M.5
Davies, J.W.6
-
52
-
-
80053611773
-
Multiple search methods for similarity-based virtual screening: Analysis of search overlap and precision
-
10.1186/1758-2946-3-29
-
Holliday, J. D.; Kanoulas, E.; Malim, N.; Willett, P. Multiple search methods for similarity-based virtual screening: Analysis of search overlap and precision J. Cheminf. 2011, 3, 29 10.1186/1758-2946-3-29
-
(2011)
J. Cheminf.
, vol.3
, pp. 29
-
-
Holliday, J.D.1
Kanoulas, E.2
Malim, N.3
Willett, P.4
-
53
-
-
33845782959
-
Analysis of data fusion methods in virtual screening: Similarity and group fusion
-
DOI 10.1021/ci0496144
-
Whittle, M.; Gillet, V. J.; Willett, P.; Loesel, J. Analysis of data fusion methods in virtual screening: Similarity and group fusion J. Chem. Inf. Model. 2006, 46, 2206-2219 (Pubitemid 46008096)
-
(2006)
Journal of Chemical Information and Modeling
, vol.46
, Issue.6
, pp. 2206-2219
-
-
Whittle, M.1
Gillet, V.J.2
Willett, P.3
Loesel, J.4
-
54
-
-
33845787616
-
Analysis of data fusion methods in virtual screening: Theoretical model
-
DOI 10.1021/ci049615w
-
Whittle, M.; Gillet, V. J.; Willett, P.; Loesel, J. Analysis of data fusion methods in virtual screening: theoretical model J. Chem. Inf. Model. 2006, 46, 2193-2205 (Pubitemid 46008095)
-
(2006)
Journal of Chemical Information and Modeling
, vol.46
, Issue.6
, pp. 2193-2205
-
-
Whittle, M.1
Gillet, V.J.2
Willett, P.3
Loesel, J.4
-
55
-
-
45749116266
-
Application of belief theory to similarity data fusion for use in analog searching and lead hopping
-
Muchmore, S. W.; Debe, D. A.; Metz, J. T.; Brown, S. P.; Martin, Y. C.; Hajduk, P. J. Application of belief theory to similarity data fusion for use in analog searching and lead hopping J. Chem. Inf. Model. 2008, 48, 941-948
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 941-948
-
-
Muchmore, S.W.1
Debe, D.A.2
Metz, J.T.3
Brown, S.P.4
Martin, Y.C.5
Hajduk, P.J.6
-
56
-
-
84873681137
-
Combination of similarity rankings using data fusion
-
Willett, P. Combination of similarity rankings using data fusion J. Chem. Inf. Model. 2013, 53, 1-10
-
(2013)
J. Chem. Inf. Model.
, vol.53
, pp. 1-10
-
-
Willett, P.1
-
57
-
-
84862192766
-
ChEMBL: A large-scale bioactivity database for drug discovery
-
Gaulton, A.; Bellis, L. J.; Bento, A. P.; Chambers, J.; Davies, M.; Hersey, A.; Light, Y.; McGlinchey, S.; Michalovich, D.; Al-Lazikani, B.; Overington, J. P. ChEMBL: A large-scale bioactivity database for drug discovery Nucleic Acids Res. 2012, 40, D1100-D1107
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Gaulton, A.1
Bellis, L.J.2
Bento, A.P.3
Chambers, J.4
Davies, M.5
Hersey, A.6
Light, Y.7
McGlinchey, S.8
Michalovich, D.9
Al-Lazikani, B.10
Overington, J.P.11
-
58
-
-
0029894013
-
The properties of known drugs. 1. Molecular frameworks
-
DOI 10.1021/jm9602928
-
Bemis, G. W.; Murcko, M. A. The properties of known drugs. 1. Molecular frameworks J. Med. Chem. 1996, 39, 2887-2893 (Pubitemid 26251026)
-
(1996)
Journal of Medicinal Chemistry
, vol.39
, Issue.15
, pp. 2887-2893
-
-
Bemis, G.W.1
Murcko, M.A.2
-
59
-
-
76049086854
-
Scaffold diversity analysis of compound data sets using an entropy-based measure
-
Medina-Franco, J. L.; Martinez-Mayorga, K.; Bender, A.; Scior, T. Scaffold diversity analysis of compound data sets using an entropy-based measure QSAR Comb Sci 2009, 28, 1551-1560
-
(2009)
QSAR Comb Sci
, vol.28
, pp. 1551-1560
-
-
Medina-Franco, J.L.1
Martinez-Mayorga, K.2
Bender, A.3
Scior, T.4
-
60
-
-
33646855259
-
-
version 8.5.0.200. Accelrys: San Diego, CA.
-
Pipeline Pilot, version 8.5.0.200. Accelrys: San Diego, CA, 2012.
-
(2012)
Pipeline Pilot
-
-
-
61
-
-
84878206203
-
-
version 2011.4, Accelrys: San Diego, CA.
-
Screening Compounds Directory, version 2011.4, Accelrys: San Diego, CA, 2011.
-
(2011)
Screening Compounds Directory
-
-
-
62
-
-
0036827075
-
Reoptimization of MDL keys for use in drug discovery
-
DOI 10.1021/ci010132r
-
Durant, J. L.; Leland, B. A.; Henry, D. R.; Nourse, J. G. Reoptimization of MDL keys for use in drug discovery J. Chem. Inf. Comput. Sci. 2002, 42, 1273-1280 (Pubitemid 35468313)
-
(2002)
Journal of Chemical Information and Computer Sciences
, vol.42
, Issue.6
, pp. 1273-1280
-
-
Durant, J.L.1
Leland, B.A.2
Henry, D.R.3
Nourse, J.G.4
-
63
-
-
77952772341
-
Extended-connectivity fingerprints
-
Rogers, D.; Hahn, M. Extended-connectivity fingerprints J. Chem. Inf. Model. 2010, 50, 742-754
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 742-754
-
-
Rogers, D.1
Hahn, M.2
-
64
-
-
69249211345
-
Analysis and use of fragment-occurrence data in similarity-based virtual screening
-
Arif, S.; Holliday, J.; Willett, P. Analysis and use of fragment-occurrence data in similarity-based virtual screening J. Comput.-Aided Mol. Des. 2009, 23, 655-668
-
(2009)
J. Comput.-Aided Mol. Des.
, vol.23
, pp. 655-668
-
-
Arif, S.1
Holliday, J.2
Willett, P.3
-
65
-
-
84867818837
-
Scanning structure-activity relationships with structure-activity similarity and related maps: From consensus activity cliffs to selectivity switches
-
Medina-Franco, J. L. Scanning structure-activity relationships with structure-activity similarity and related maps: from consensus activity cliffs to selectivity switches J. Chem. Inf. Model. 2012, 52, 2485-2493
-
(2012)
J. Chem. Inf. Model.
, vol.52
, pp. 2485-2493
-
-
Medina-Franco, J.L.1
-
66
-
-
2942700377
-
Comparison of fingerprint-based methods for virtual screening using multiple bioactive reference structures
-
Hert, J.; Willett, P.; Wilton, D. J.; Acklin, P.; Azzaoui, K.; Jacoby, E.; Schuffenhauer, A. Comparison of fingerprint-based methods for virtual screening using multiple bioactive reference structures J. Chem. Inf. Comput. Sci. 2004, 44, 1177-1185
-
(2004)
J. Chem. Inf. Comput. Sci.
, vol.44
, pp. 1177-1185
-
-
Hert, J.1
Willett, P.2
Wilton, D.J.3
Acklin, P.4
Azzaoui, K.5
Jacoby, E.6
Schuffenhauer, A.7
-
67
-
-
84878189561
-
-
SMIRKS. (accessed December 10).
-
SMIRKS. http://www.daylight.com/dayhtml/doc/theory/theory.smirks.html (accessed December 10, 2012).
-
(2012)
-
-
-
69
-
-
84878167990
-
-
SMARTS. (accessed December 10).
-
SMARTS. http://www.daylight.com/dayhtml/doc/theory/theory.smarts.html (accessed December 10, 2012).
-
(2012)
-
-
-
70
-
-
77950041116
-
B-Raf kinase inhibitors: Hit enrichment through scaffold hopping
-
Gopalsamy, A.; Shi, M.; Hu, Y.; Lee, F.; Feldberg, L.; Frommer, E.; Kim, S.; Collins, K.; Wojciechowicz, D.; Mallon, R. B-Raf kinase inhibitors: Hit enrichment through scaffold hopping Bioorg. Med. Chem. Lett. 2010, 20, 2431-2434
-
(2010)
Bioorg. Med. Chem. Lett.
, vol.20
, pp. 2431-2434
-
-
Gopalsamy, A.1
Shi, M.2
Hu, Y.3
Lee, F.4
Feldberg, L.5
Frommer, E.6
Kim, S.7
Collins, K.8
Wojciechowicz, D.9
Mallon, R.10
-
71
-
-
84861819196
-
Efficient hit-finding approaches for histone methyltransferases: The key parameters
-
Ahrens, T.; Bergner, A.; Sheppard, D.; Hafenbradl, D. Efficient hit-finding approaches for histone methyltransferases: the key parameters J. Biomol. Screen. 2012, 17, 85-98
-
(2012)
J. Biomol. Screen.
, vol.17
, pp. 85-98
-
-
Ahrens, T.1
Bergner, A.2
Sheppard, D.3
Hafenbradl, D.4
-
72
-
-
84878185291
-
-
Presented at Miptec, Basel, Switzerland, September 24-29.
-
Beyer, K.; Rye, P.; Fasler, S.; Hafenbradl, D.; Bergner, A. Identification and Characterization of Inhibitors of the Histone Demethylase LSD1. Presented at Miptec, Basel, Switzerland, September 24-29, 2012.
-
(2012)
Identification and Characterization of Inhibitors of the Histone Demethylase LSD1
-
-
Beyer, K.1
Rye, P.2
Fasler, S.3
Hafenbradl, D.4
Bergner, A.5
-
73
-
-
84878213677
-
-
Presented at Miptec, Basel, Switzerland, September 24-29.
-
Bergner, A.; Allen, V.; Beyer, K. Making Epigenetic Target Screening Smart: Computational Compound Selection and Hit Expansion Approaches for Identifying Inhibitors of LSD1. Presented at Miptec, Basel, Switzerland, September 24-29, 2012.
-
(2012)
Making Epigenetic Target Screening Smart: Computational Compound Selection and Hit Expansion Approaches for Identifying Inhibitors of LSD1
-
-
Bergner, A.1
Allen, V.2
Beyer, K.3
-
74
-
-
35748934487
-
The influence of drug-like concepts on decision-making in medicinal chemistry
-
DOI 10.1038/nrd2445, PII NRD2445
-
Leeson, P. D.; Springthorpe, B. The influence of drug-like concepts on decision-making in medicinal chemistry Nat. Rev. Drug Discovery 2007, 6, 881-890 (Pubitemid 350042396)
-
(2007)
Nature Reviews Drug Discovery
, vol.6
, Issue.11
, pp. 881-890
-
-
Leeson, P.D.1
Springthorpe, B.2
-
75
-
-
46849089254
-
Recent developments in fragment-based drug discovery
-
DOI 10.1021/jm8000373
-
Congreve, M.; Chessari, G.; Tisi, D.; Woodhead, A. J. Recent developments in fragment-based drug discovery J. Med. Chem. 2008, 51, 3661-3680 (Pubitemid 351956496)
-
(2008)
Journal of Medicinal Chemistry
, vol.51
, Issue.13
, pp. 3661-3680
-
-
Congreve, M.1
Chessari, G.2
Tisi, D.3
Woodhead, A.J.4
-
76
-
-
33845364148
-
Fragment-based drug design: How big is too big?
-
DOI 10.1021/jm060511h
-
Hajduk, P. J. Fragment-based drug design: How big is too big? J. Med. Chem. 2006, 49, 6972-6976 (Pubitemid 44885985)
-
(2006)
Journal of Medicinal Chemistry
, vol.49
, Issue.24
, pp. 6972-6976
-
-
Hajduk, P.J.1
-
77
-
-
4344592378
-
Fragment-based lead discovery
-
Rees, D. C.; Congreve, M.; Murray, C. W.; Carr, R. Fragment-based lead discovery Nat. Rev. Drug Discovery 2004, 3, 660-672 (Pubitemid 39173507)
-
(2004)
Nature Reviews Drug Discovery
, vol.3
, Issue.8
, pp. 660-672
-
-
Ress, D.C.1
Congreve, M.2
Murray, C.W.3
Carr, R.4
-
78
-
-
1842759750
-
Data shaving: A focused screening approach
-
Schreyer, S. K.; Parker, C. N.; Maggiora, G. M. Data shaving: A focused screening approach J. Chem. Inf. Comput. Sci. 2004, 44, 470-479
-
(2004)
J. Chem. Inf. Comput. Sci.
, vol.44
, pp. 470-479
-
-
Schreyer, S.K.1
Parker, C.N.2
Maggiora, G.M.3
-
79
-
-
26944503021
-
Using extended-connectivity fingerprints with Laplacian-modified Bayesian analysis in high-throughput screening follow-up
-
DOI 10.1177/1087057105281365
-
Rogers, D.; Brown, R. D.; Hahn, M. Using extended-connectivity fingerprints with Laplacian-modified Bayesian analysis in high-throughput screening follow-up J. Biomol. Screening 2005, 10, 682-686 (Pubitemid 41476802)
-
(2005)
Journal of Biomolecular Screening
, vol.10
, Issue.7
, pp. 682-686
-
-
Rogers, D.1
Brown, R.D.2
Hahn, M.3
-
80
-
-
84858053438
-
Virtual screening data fusion using both structure- and ligand-based methods
-
Svensson, F.; Karlén, A.; Sköld, C. Virtual screening data fusion using both structure- and ligand-based methods J. Chem. Inf. Model. 2011, 52, 225-232
-
(2011)
J. Chem. Inf. Model.
, vol.52
, pp. 225-232
-
-
Svensson, F.1
Karlén, A.2
Sköld, C.3
|