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Volumn 30, Issue 6, 2013, Pages 1454-1464

Chromosome painting in silico in a bacterial species reveals fine population structure

Author keywords

fineSTRUCTURE; Helicobacter pylori; homologous recombination; human evolution; phylogenetic network

Indexed keywords

ARTICLE; BACTERIAL GENETICS; CHROMOSOME PAINTING; EVOLUTION; GENE SEQUENCE; GENETIC VARIABILITY; HELICOBACTER PYLORI; HOMOLOGOUS RECOMBINATION; HOUSEKEEPING GENE; HUMAN; NONHUMAN; PHYLOGENY; POPULATION STRUCTURE; SEQUENCE ANALYSIS;

EID: 84877749743     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mst055     Document Type: Article
Times cited : (73)

References (75)
  • 1
    • 53849111617 scopus 로고    scopus 로고
    • Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens
    • AchtmanM. 2008. Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens. Annu Rev Microbiol. 62:53-70.
    • (2008) Annu Rev Microbiol. , vol.62 , pp. 53-70
    • Achtman, M.1
  • 3
    • 84871166819 scopus 로고    scopus 로고
    • Population structure and exotoxin gene content of methicillin-susceptible Staphylococcus aureus from Spanish healthy carriers
    • Argudin MA, Argumosa V, Mendoza MC, Guerra B, Rodicio MR. 2013. Population structure and exotoxin gene content of methicillin-susceptible Staphylococcus aureus from Spanish healthy carriers. Microb Pathog. 54:26-33.
    • (2013) Microb Pathog. , vol.54 , pp. 26-33
    • Argudin, M.A.1    Argumosa, V.2    Mendoza, M.C.3    Guerra, B.4    Rodicio, M.R.5
  • 4
    • 12144291018 scopus 로고    scopus 로고
    • Association between diversity in the Src homology 2 domain - containing tyrosine phosphatase binding site of Helicobacter pylori CagA protein and gastric atrophy and cancer
    • (13 Co-authors).
    • Azuma T, Yamazaki S, Yamakawa A, et al. (13 co-authors). 2004. Association between diversity in the Src homology 2 domain - containing tyrosine phosphatase binding site of Helicobacter pylori CagA protein and gastric atrophy and cancer. J Infect Dis. 189:820-827.
    • (2004) J Infect Dis. , vol.189 , pp. 820-827
    • Azuma, T.1    Yamazaki, S.2    Yamakawa, A.3
  • 5
    • 84863596741 scopus 로고    scopus 로고
    • Population structure in the Neisseria, and the biological significance of fuzzy species
    • Corander J, Connor TR, O'Dwyer CA, Kroll JS, Hanage WP. 2011. Population structure in the Neisseria, and the biological significance of fuzzy species. J R Soc Interface. 9:1208-1215.
    • (2011) J R Soc Interface. , vol.9 , pp. 1208-1215
    • Corander, J.1    Connor, T.R.2    O'Dwyer, C.A.3    Kroll, J.S.4    Hanage, W.P.5
  • 6
    • 62349132559 scopus 로고    scopus 로고
    • Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations
    • Corander J, Marttinen P, Siren J, Tang J. 2008. Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics 9:539.
    • (2008) BMC Bioinformatics , vol.9 , pp. 539
    • Corander, J.1    Marttinen, P.2    Siren, J.3    Tang, J.4
  • 7
    • 33845227584 scopus 로고    scopus 로고
    • Bayesian analysis of population structure based on linked molecular information
    • Corander J, Tang J. 2007. Bayesian analysis of population structure based on linked molecular information. Math Biosci. 205:19-31.
    • (2007) Math Biosci. , vol.205 , pp. 19-31
    • Corander, J.1    Tang, J.2
  • 8
    • 79251544864 scopus 로고    scopus 로고
    • Rapid pneumococcal evolution in response to clinical interventions
    • (24 Co-authors).
    • Croucher NJ, Harris SR, Fraser C, et al. (24 co-authors). 2011. Rapid pneumococcal evolution in response to clinical interventions. Science 331:430-434.
    • (2011) Science , vol.331 , pp. 430-434
    • Croucher, N.J.1    Harris, S.R.2    Fraser, C.3
  • 9
    • 0032714352 scopus 로고    scopus 로고
    • Genomic control for association studies
    • Devlin B, Roeder K. 1999. Genomic control for association studies. Biometrics 55:997-1004.
    • (1999) Biometrics , vol.55 , pp. 997-1004
    • Devlin, B.1    Roeder, K.2
  • 10
    • 79960935954 scopus 로고    scopus 로고
    • Recombination and population structure in Salmonella enterica
    • (12 Co-authors).
    • Didelot X, Bowden R, Street T, et al. (12 co-authors). 2011. Recombination and population structure in Salmonella enterica. PLoS Genet. 7:e1002191.
    • (2011) PLoS Genet. , vol.7
    • Didelot, X.1    Bowden, R.2    Street, T.3
  • 11
    • 84877754084 scopus 로고    scopus 로고
    • last accessed April 5 2013
    • Didelot X, Falush D. 2007a. ClonalFrame user guide. http://www.stats.ox. ac.uk/.didelot/files/clonalframe-userguide.pdf (last accessed April 5, 2013).
    • (2007) ClonalFrame user guide.
    • Didelot, X.1    Falush, D.2
  • 12
    • 34249027580 scopus 로고    scopus 로고
    • Inference of bacterial microevolution using multilocus sequence data
    • Didelot X, Falush D. 2007b. Inference of bacterial microevolution using multilocus sequence data. Genetics 175:1251-1266.
    • (2007) Genetics , vol.175 , pp. 1251-1266
    • Didelot, X.1    Falush, D.2
  • 13
    • 79251573854 scopus 로고    scopus 로고
    • Inference of homologous recombination in bacteria using whole-genome sequences
    • Didelot X, Lawson D, Darling A, Falush D. 2010. Inference of homologous recombination in bacteria using whole-genome sequences. Genetics 186:1435-1449.
    • (2010) Genetics , vol.186 , pp. 1435-1449
    • Didelot, X.1    Lawson, D.2    Darling, A.3    Falush, D.4
  • 14
    • 77954143123 scopus 로고    scopus 로고
    • Impact of recombination on bacterial evolution
    • Didelot X, Maiden MC. 2010. Impact of recombination on bacterial evolution. Trends Microbiol. 18:315-322.
    • (2010) Trends Microbiol. , vol.18 , pp. 315-322
    • Didelot, X.1    Maiden, M.C.2
  • 15
    • 84862290950 scopus 로고    scopus 로고
    • Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli
    • Didelot X, Meric G, Falush D, Darling AE. 2012. Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli. BMC Genomics 13:256.
    • (2012) BMC Genomics , vol.13 , pp. 256
    • Didelot, X.1    Meric, G.2    Falush, D.3    Darling, A.E.4
  • 16
    • 84877777336 scopus 로고    scopus 로고
    • Mapping human genetic diversity on the Japanese archipelago
    • Ding Q, Wang C, Faria S, Li H. 2011. Mapping human genetic diversity on the Japanese archipelago. Adv Anthropol. 1:19-25.
    • (2011) Adv Anthropol. , vol.1 , pp. 19-25
    • Ding, Q.1    Wang, C.2    Faria, S.3    Li, H.4
  • 17
    • 66049089612 scopus 로고    scopus 로고
    • On the origin of prokaryotic species
    • DoolittleWF, Zhaxybayeva O. 2009. On the origin of prokaryotic species. Genome Res. 19:744-756.
    • (2009) Genome Res. , vol.19 , pp. 744-756
    • Doolittle, W.F.1    Zhaxybayeva, O.2
  • 18
    • 83055168329 scopus 로고    scopus 로고
    • Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance
    • (20 Co-authors).
    • Downing T, Imamura H, Decuypere S, et al. (20 co-authors). 2011. Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance. Genome Res. 21:2143-2156.
    • (2011) Genome Res. , vol.21 , pp. 2143-2156
    • Downing, T.1    Imamura, H.2    Decuypere, S.3
  • 19
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK. 2003. Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics 164:1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 20
    • 0037423837 scopus 로고    scopus 로고
    • Traces of human migrations in Helicobacter pylori populations
    • (13 Co-authors).
    • Falush D, Wirth T, Linz B, et al. (13 co-authors). 2003. Traces of human migrations in Helicobacter pylori populations. Science 299: 1582-1585.
    • (2003) Science , vol.299 , pp. 1582-1585
    • Falush, D.1    Wirth, T.2    Linz, B.3
  • 21
    • 0034769889 scopus 로고    scopus 로고
    • Recombination and the population structures of bacterial pathogens
    • Feil EJ, Spratt BG. 2001. Recombination and the population structures of bacterial pathogens. Annu Rev Microbiol. 55:561-590.
    • (2001) Annu Rev Microbiol. , vol.55 , pp. 561-590
    • Feil, E.J.1    Spratt, B.G.2
  • 22
    • 79952129488 scopus 로고    scopus 로고
    • Birth and death of genes linked to chromosomal inversion
    • (12 Co-authors).
    • Furuta Y, Kawai M, Yahara K, et al. (12 co-authors). 2011. Birth and death of genes linked to chromosomal inversion. Proc Natl Acad Sci U S A. 108:1501-1506.
    • (2011) Proc Natl Acad Sci U S A. , vol.108 , pp. 1501-1506
    • Furuta, Y.1    Kawai, M.2    Yahara, K.3
  • 23
    • 80051655843 scopus 로고    scopus 로고
    • Evolution of cagA oncogene of Helicobacter pylori through recombination
    • Furuta Y, Yahara K, Hatakeyama M, Kobayashi I. 2011. Evolution of cagA oncogene of Helicobacter pylori through recombination. PLoS One 6: E23499.
    • (2011) PLoS One , vol.6
    • Furuta, Y.1    Yahara, K.2    Hatakeyama, M.3    Kobayashi, I.4
  • 24
    • 0035054380 scopus 로고    scopus 로고
    • Automated finishing with autofinish
    • Gordon D, Desmarais C, Green P. 2001. Automated finishing with autofinish. Genome Res. 11:614-625.
    • (2001) Genome Res. , vol.11 , pp. 614-625
    • Gordon, D.1    Desmarais, C.2    Green, P.3
  • 25
    • 0028960407 scopus 로고
    • Y chromosomal DNA variation and the peopling of Japan
    • Hammer MF, Horai S. 1995. Y chromosomal DNA variation and the peopling of Japan. Am J Hum Genet. 56:951-962.
    • (1995) Am J Hum Genet. , vol.56 , pp. 951-962
    • Hammer, M.F.1    Horai, S.2
  • 27
    • 67149119196 scopus 로고    scopus 로고
    • Hyper-recombination, diversity, and antibiotic resistance in pneumococcus
    • Hanage WP, Fraser C, Tang J, Connor TR, Corander J. 2009. Hyper-recombination, diversity, and antibiotic resistance in pneumococcus. Science 324:1454-1457.
    • (2009) Science , vol.324 , pp. 1454-1457
    • Hanage, W.P.1    Fraser, C.2    Tang, J.3    Connor, T.R.4    Corander, J.5
  • 28
    • 0002080450 scopus 로고
    • Dual structuremodel for the population history of the Japanese
    • Hanihara K. 1991. Dual structuremodel for the population history of the Japanese. Japan Rev. 2:1-33.
    • (1991) Japan Rev. , vol.2 , pp. 1-33
    • Hanihara, K.1
  • 29
    • 84859326308 scopus 로고    scopus 로고
    • Wholegenome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing
    • (24 Co-authors). S1
    • Harris SR, Clarke IN, Seth-Smith HM, et al. (24 co-authors). 2012. Wholegenome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing. Nat Genet. 44:413-419, S1.
    • (2012) Nat Genet. , vol.44 , pp. 413-419
    • Harris, S.R.1    Clarke, I.N.2    Seth-Smith, H.M.3
  • 30
    • 84857462303 scopus 로고    scopus 로고
    • Genomic ancestry of North Africans supports back-to-Africa migrations
    • (12 Co-authors).
    • Henn BM, Botigue LR, Gravel S, et al. (12 co-authors). 2012. Genomic ancestry of North Africans supports back-to-Africa migrations. PLoS Genet. 8:e1002397.
    • (2012) PLoS Genet. , vol.8
    • Henn, B.M.1    Botigue, L.R.2    Gravel, S.3
  • 31
    • 58149174244 scopus 로고    scopus 로고
    • High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography
    • (11 Co-authors).
    • Hershberg R, Lipatov M, Small PM, et al. (11 co-authors). 2008. High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 6:e311.
    • (2008) PLoS Biol. , vol.6
    • Hershberg, R.1    Lipatov, M.2    Small, P.M.3
  • 32
    • 67349176068 scopus 로고    scopus 로고
    • Genetics in geographically structured populations: Defining, estimating and interpreting F(ST
    • Holsinger KE, Weir BS. 2009. Genetics in geographically structured populations: Defining, estimating and interpreting F(ST). Nat Rev Genet. 10:639-650.
    • (2009) Nat Rev Genet. , vol.10 , pp. 639-650
    • Holsinger, K.E.1    Weir, B.S.2
  • 33
    • 84865683817 scopus 로고    scopus 로고
    • Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe
    • 12 co-authors).
    • Holt KE, Baker S, Weill FX, et al. (12 co-authors). 2012. Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe. Nat Genet. 44:1056-1059.
    • (2012) Nat Genet. , vol.44 , pp. 1056-1059
    • Holt, K.E.1    Baker, S.2    Weill, F.X.3
  • 35
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson DH, Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 23:254-267.
    • (2006) Mol Biol Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 36
    • 39749197456 scopus 로고    scopus 로고
    • Genotype, haplotype and copy-number variation in worldwide human populations
    • (12 Co-authors).
    • Jakobsson M, Scholz SW, Scheet P, et al. (12 co-authors). 2008. Genotype, haplotype and copy-number variation in worldwide human populations. Nature 451:998-1003.
    • (2008) Nature , vol.451 , pp. 998-1003
    • Jakobsson, M.1    Scholz, S.W.2    Scheet, P.3
  • 37
    • 44349095887 scopus 로고    scopus 로고
    • Adegenet: A R package for the multivariate analysis of genetic markers
    • Jombart T. 2008. Adegenet: A R package for the multivariate analysis of genetic markers. Bioinformatics 24:1403-1405.
    • (2008) Bioinformatics , vol.24 , pp. 1403-1405
    • Jombart, T.1
  • 38
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: Improvement in accuracy of multiple sequence alignment
    • Katoh K, Kuma K, Toh H, Miyata T. 2005. MAFFT version 5: Improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 33:511-518.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 39
    • 79955883801 scopus 로고    scopus 로고
    • Evolution in an oncogenic bacterial species with extreme genome plasticity: Helicobacter pylori East Asian genomes
    • (12 Co-authors).
    • KawaiM, Furuta Y, Yahara K, et al. (12 co-authors). 2011. Evolution in an oncogenic bacterial species with extreme genome plasticity: Helicobacter pylori East Asian genomes. BMC Microbiol. 11:104.
    • (2011) BMC Microbiol. , vol.11 , pp. 104
    • KawaiM Furuta, Y.1    Yahara, K.2
  • 40
    • 79953187986 scopus 로고    scopus 로고
    • Helicobacter pylori genome evolution during human infection
    • (12 Co-authors).
    • Kennemann L, Didelot X, Aebischer T, et al. (12 co-authors). 2011. Helicobacter pylori genome evolution during human infection. Proc Natl Acad Sci U S A. 108:5033-5038.
    • (2011) Proc Natl Acad Sci U S A. , vol.108 , pp. 5033-5038
    • Kennemann, L.1    Didelot, X.2    Aebischer, T.3
  • 41
    • 78649729116 scopus 로고    scopus 로고
    • Helicobacter pylori from Peruvian Amerindians: Traces of human migrations in strains from remote Amazon, and genome sequence of an Amerind strain
    • (15 Co-authors).
    • Kersulyte D, Kalia A, Gilman RH, et al. (15 co-authors). 2010. Helicobacter pylori from Peruvian Amerindians: Traces of human migrations in strains from remote Amazon, and genome sequence of an Amerind strain. PLoS One 5:e15076.
    • (2010) PLoS One , vol.5
    • Kersulyte, D.1    Kalia, A.2    Gilman, R.H.3
  • 42
    • 84867422922 scopus 로고    scopus 로고
    • Population identiEcation using genetic data
    • Lawson D, Falush D. 2012. Population identiEcation using genetic data. Annu Rev Genomics Hum Genet. 13:337-361.
    • (2012) Annu Rev Genomics Hum Genet. , vol.13 , pp. 337-361
    • Lawson, D.1    Falush, D.2
  • 43
    • 84857477622 scopus 로고    scopus 로고
    • Inference of population structure using dense haplotype data
    • Lawson DJ, Hellenthal G, Myers S, Falush D. 2012. Inference of population structure using dense haplotype data. PLoS Genet. 8:e1002453.
    • (2012) PLoS Genet. , vol.8
    • Lawson, D.J.1    Hellenthal, G.2    Myers, S.3    Falush, D.4
  • 44
    • 33847201150 scopus 로고    scopus 로고
    • An African origin for the intimate association between humans and Helicobacter pylori
    • (12 Co-authors).
    • Linz B, Balloux F, Moodley Y, et al. (12 co-authors). 2007. An African origin for the intimate association between humans and Helicobacter pylori. Nature 445:915-918.
    • (2007) Nature , vol.445 , pp. 915-918
    • Linz, B.1    Balloux, F.2    Moodley, Y.3
  • 46
    • 0018080152 scopus 로고
    • Synthetic maps of human gene frequencies in Europeans
    • Menozzi P, Piazza A, Cavalli-Sforza L. 1978. Synthetic maps of human gene frequencies in Europeans. Science 201:786-792.
    • (1978) Science , vol.201 , pp. 786-792
    • Menozzi, P.1    Piazza, A.2    Cavalli-Sforza, L.3
  • 48
    • 84863692086 scopus 로고    scopus 로고
    • Age of the association between Helicobacter pylori and man
    • (12 Co-authors).
    • Moodley Y, Linz B, Bond RP, et al. (12 co-authors). 2012. Age of the association between Helicobacter pylori and man. PLoS Pathog. 8: E1002693.
    • (2012) PLoS Pathog. , vol.8
    • Moodley, Y.1    Linz, B.2    Bond, R.P.3
  • 49
    • 58849086252 scopus 로고    scopus 로고
    • The peopling of the Pacific from a bacterial perspective
    • (15 Co-authors).
    • Moodley Y, Linz B, Yamaoka Y, et al. (15 co-authors). 2009. The peopling of the Pacific from a bacterial perspective. Science 323:527-530.
    • (2009) Science , vol.323 , pp. 527-530
    • Moodley, Y.1    Linz, B.2    Yamaoka, Y.3
  • 51
    • 78649470145 scopus 로고    scopus 로고
    • Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity
    • (24 Co-authors).
    • Morelli G, Song Y, Mazzoni CJ, et al. (24 co-authors). 2010. Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nat Genet. 42:1140-1143.
    • (2010) Nat Genet. , vol.42 , pp. 1140-1143
    • Morelli, G.1    Song, Y.2    Mazzoni, C.J.3
  • 52
    • 15944420911 scopus 로고    scopus 로고
    • Cluster analysis and association study of structured multilocus genotype data
    • Nakamura T, Shoji A, Fujisawa H, Kamatani N. 2005. Cluster analysis and association study of structured multilocus genotype data. J Hum Genet. 50:53-61.
    • (2005) J Hum Genet. , vol.50 , pp. 53-61
    • Nakamura, T.1    Shoji, A.2    Fujisawa, H.3    Kamatani, N.4
  • 53
    • 80052748466 scopus 로고    scopus 로고
    • Perspectives on human population structure at the cusp of the sequencing era
    • Novembre J, Ramachandran S. 2011. Perspectives on human population structure at the cusp of the sequencing era. Annu Rev Genomics Hum Genet. 12:245-274.
    • (2011) Annu Rev Genomics Hum Genet. , vol.12 , pp. 245-274
    • Novembre, J.1    Ramachandran, S.2
  • 54
    • 84868201561 scopus 로고    scopus 로고
    • Intracontinental spread of human invasive Salmonella typhimurium pathovariants in sub-Saharan Africa
    • (21 Co-authors).
    • Okoro CK, Kingsley RA, Connor TR, et al. (21 co-authors). 2012. Intracontinental spread of human invasive Salmonella typhimurium pathovariants in sub-Saharan Africa. Nat Genet. 44:1225-1221.
    • (2012) Nat Genet. , vol.44 , pp. 1225-1221
    • Okoro, C.K.1    Kingsley, R.A.2    Connor, T.R.3
  • 56
    • 79959679871 scopus 로고    scopus 로고
    • Inferring the population expansions in peopling of Japan
    • Peng MS, Zhang YP. 2011. Inferring the population expansions in peopling of Japan. PLoS One 6:e21509.
    • (2011) PLoS One , vol.6
    • Peng, M.S.1    Zhang, Y.P.2
  • 58
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 60
    • 0034759330 scopus 로고    scopus 로고
    • Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds
    • (12 co-authors).
    • Rosenberg NA, Burke T, Elo K, et al. (12 co-authors). 2001. Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds. Genetics 159:699-713.
    • (2001) Genetics , vol.159 , pp. 699-713
    • Rosenberg, N.A.1    Burke, T.2    Elo, K.3
  • 62
    • 33747887088 scopus 로고    scopus 로고
    • Relationship between the diversity of the cagA gene of Helicobacter pylori and gastric cancer in Okinawa, Japan
    • (13 Co-authors).
    • Satomi S, Yamakawa A, Matsunaga S, et al. (13 co-authors). 2006. Relationship between the diversity of the cagA gene of Helicobacter pylori and gastric cancer in Okinawa, Japan. J Gastroenterol. 41:668-673.
    • (2006) J Gastroenterol. , vol.41 , pp. 668-673
    • Satomi, S.1    Yamakawa, A.2    Matsunaga, S.3
  • 64
    • 27144493223 scopus 로고    scopus 로고
    • Genome trees and the nature of genome evolution
    • Snel B, Huynen MA, Dutilh BE. 2005. Genome trees and the nature of genome evolution. Annu Rev Microbiol. 59:191-209.
    • (2005) Annu Rev Microbiol. , vol.59 , pp. 191-209
    • Snel, B.1    Huynen, M.A.2    Dutilh, B.E.3
  • 65
    • 34249048365 scopus 로고    scopus 로고
    • Helicobacter pylori evolution and phenotypic diversification in a changing host
    • Suerbaum S, Josenhans C. 2007. Helicobacter pylori evolution and phenotypic diversification in a changing host. Nat Rev Microbiol. 5: 441-452.
    • (2007) Nat Rev Microbiol. , vol.5 , pp. 441-452
    • Suerbaum, S.1    Josenhans, C.2
  • 66
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2012. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731-2739.
    • (2012) Mol Biol Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 67
    • 71549135542 scopus 로고    scopus 로고
    • Diverse characteristics of the CagA gene of Helicobacter pylori strains collected from patients from southern Vietnam with gastric cancer and peptic ulcer
    • (11 Co-authors).
    • Truong BX, Mai VT, Tanaka H, et al. (11 co-authors). 2009. Diverse characteristics of the CagA gene of Helicobacter pylori strains collected from patients from southern Vietnam with gastric cancer and peptic ulcer. J Clin Microbiol. 47:4021-4028.
    • (2009) J Clin Microbiol. , vol.47 , pp. 4021-4028
    • Truong, B.X.1    Mai, V.T.2    Tanaka, H.3
  • 68
    • 32644443138 scopus 로고    scopus 로고
    • Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes
    • Uchiyama I. 2006. Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes. Nucleic Acids Res. 34:647-658.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 647-658
    • Uchiyama, I.1
  • 69
    • 58149523840 scopus 로고    scopus 로고
    • Multiple genome alignment for identifying the core structure among moderately related microbial genomes
    • Uchiyama I. 2008. Multiple genome alignment for identifying the core structure among moderately related microbial genomes. BMC Genomics 9:515.
    • (2008) BMC Genomics , vol.9 , pp. 515
    • Uchiyama, I.1
  • 70
    • 0037022583 scopus 로고    scopus 로고
    • Dynamics of bacterial phenotype selection in a colonized host
    • Webb GF, Blaser MJ. 2002. Dynamics of bacterial phenotype selection in a colonized host. Proc Natl Acad Sci U S A. 99:3135-3140.
    • (2002) Proc Natl Acad Sci U S A. , vol.99 , pp. 3135-3140
    • Webb, G.F.1    Blaser, M.J.2
  • 71
    • 84865417779 scopus 로고    scopus 로고
    • Genome-wide survey of mutual homologous recombination in a highly sexual bacterial species
    • (12 Co-authors).
    • Yahara K, Kawai M, Furuta Y, et al. (12 co-authors). 2012. Genome-wide survey of mutual homologous recombination in a highly sexual bacterial species. Genome Biol Evol. 4:628-640.
    • (2012) Genome Biol Evol. , vol.4 , pp. 628-640
    • Yahara, K.1    Kawai, M.2    Furuta, Y.3
  • 72
    • 53049090475 scopus 로고    scopus 로고
    • Japanese population structure, based on SNP genotypes from 7003 individuals compared to other ethnic groups: Effects on population-based association studies
    • Yamaguchi-Kabata Y, Nakazono K, Takahashi A, Saito S, Hosono N, Kubo M, Nakamura Y, Kamatani N. 2008. Japanese population structure, based on SNP genotypes from 7003 individuals compared to other ethnic groups: Effects on population-based association studies. Am J Hum Genet. 83:445-456.
    • (2008) Am J Hum Genet. , vol.83 , pp. 445-456
    • Yamaguchi-Kabata, Y.1    Nakazono, K.2    Takahashi, A.3    Saito, S.4    Hosono, N.5    Kubo, M.6    Nakamura, Y.7    Kamatani, N.8
  • 73
    • 23744465646 scopus 로고    scopus 로고
    • Distinct diversity of vacA, cagA, and cagE genes of Helicobacter pylori associated with peptic ulcer in Japan
    • (11 Co-authors).
    • Yamazaki S, Yamakawa A, Okuda T, et al. (11 co-authors). 2005. Distinct diversity of vacA, cagA, and cagE genes of Helicobacter pylori associated with peptic ulcer in Japan. J Clin Microbiol. 43: 3906-3916.
    • (2005) J Clin Microbiol. , vol.43 , pp. 3906-3916
    • Yamazaki, S.1    Yamakawa, A.2    Okuda, T.3
  • 74
    • 17644416423 scopus 로고    scopus 로고
    • Practical population group assignment with selected informative markers: Characteristics and properties of Bayesian clustering via STRUCTURE
    • Yang BZ, Zhao H, Kranzler HR, Gelernter J. 2005. Practical population group assignment with selected informative markers: Characteristics and properties of Bayesian clustering via STRUCTURE. Genet Epidemiol. 28:302-312.
    • (2005) Genet Epidemiol. , vol.28 , pp. 302-312
    • Yang, B.Z.1    Zhao, H.2    Kranzler, H.R.3    Gelernter, J.4


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