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Volumn 6, Issue 7, 2010, Pages 1-12

Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SUBSTITUTION; ARTICLE; BACTERIUM ISOLATE; BUCHNERA; CAMPYLOBACTER JEJUNI; CONTROLLED STUDY; FAMILY STUDY; GENE SEQUENCE; GENETIC RECOMBINATION; GENETIC VARIABILITY; HELICOBACTER INFECTION; HELICOBACTER PYLORI; HOST; MOLECULAR CLOCK; MOLECULAR EVOLUTION; MUTATION RATE; MUTATIONAL ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; SEQUENCE HOMOLOGY; SPECIES COMPARISON; STAPHYLOCOCCUS AUREUS; VIBRIO CHOLERAE; YERSINIA PESTIS; BAYES THEOREM; FAMILY; GENETICS; HUMAN; KINETICS; MICROBIOLOGY; MIDDLE AGED; MUTATION;

EID: 77957331293     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1001036     Document Type: Article
Times cited : (128)

References (71)
  • 1
    • 19944390941 scopus 로고    scopus 로고
    • Microevolution and history of the plague bacillus, Yersinia pestis
    • Achtman M, Morelli G, Zhu P, Wirth T, Diehl I, et al. (2004) Microevolution and history of the plague bacillus, Yersinia pestis. Proc Natl Acad Sci (USA) 101: 17837-17842.
    • (2004) Proc Natl Acad Sci (USA) , vol.101 , pp. 17837-17842
    • Achtman, M.1    Morelli, G.2    Zhu, P.3    Wirth, T.4    Diehl, I.5
  • 3
    • 52949129115 scopus 로고    scopus 로고
    • Frequent emergence and limited geographic dispersal of methicillin-resistant Staphylococcus aureus
    • Nübel U, Roumagnac P, Feldkamp M, Song JH, Ko KS, et al. (2008) Frequent emergence and limited geographic dispersal of methicillin-resistant Staphylococcus aureus. Proc Natl Acad Sci (USA) 105: 14130-14135.
    • (2008) Proc Natl Acad Sci (USA) , vol.105 , pp. 14130-14135
    • Nübel, U.1    Roumagnac, P.2    Feldkamp, M.3    Song, J.H.4    Ko, K.S.5
  • 4
    • 0030931719 scopus 로고    scopus 로고
    • Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination
    • Sreevatsan S, Pan X, Stockbauer K, Connell ND, Kreiswirth BN, et al. (1997) Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc Natl Acad Sci (U S A) 94: 9869-9874.
    • (1997) Proc Natl Acad Sci (U S A) , vol.94 , pp. 9869-9874
    • Sreevatsan, S.1    Pan, X.2    Stockbauer, K.3    Connell, N.D.4    Kreiswirth, B.N.5
  • 5
    • 0034641731 scopus 로고    scopus 로고
    • Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics
    • Pupo GM, Lan R, Reeves PR (2000) Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics. Proc Natl Acad Sci (U S A) 97: 10567-10572.
    • (2000) Proc Natl Acad Sci (U S A) , vol.97 , pp. 10567-10572
    • Pupo, G.M.1    Lan, R.2    Reeves, P.R.3
  • 6
    • 66649094404 scopus 로고    scopus 로고
    • A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis
    • Leopold SR, Magrini V, Holt NJ, Shaikh N, Mardis ER, et al. (2009) A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis. Proc Natl Acad Sci (USA) 106: 8713-8718.
    • (2009) Proc Natl Acad Sci (USA) , vol.106 , pp. 8713-8718
    • Leopold, S.R.1    Magrini, V.2    Holt, N.J.3    Shaikh, N.4    Mardis, E.R.5
  • 7
    • 0042355274 scopus 로고    scopus 로고
    • Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica
    • Parkhill J, Sebaihia M, Preston A, Murphy LD, Thomson N, et al. (2003) Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Nature Genet 35: 32-40.
    • (2003) Nature Genet , vol.35 , pp. 32-40
    • Parkhill, J.1    Sebaihia, M.2    Preston, A.3    Murphy, L.D.4    Thomson, N.5
  • 9
    • 53849133821 scopus 로고    scopus 로고
    • Evolutionary history and phylogeography of human viruses
    • Holmes EC (2008) Evolutionary history and phylogeography of human viruses. Annu Rev Microbiol 62: 307-328.
    • (2008) Annu Rev Microbiol , vol.62 , pp. 307-328
    • Holmes, E.C.1
  • 10
    • 0023514080 scopus 로고
    • Evolution in bacteria: Evidence for a universal substitution rate in cellular genomes
    • Ochman H, Wilson AC (1987) Evolution in bacteria: Evidence for a universal substitution rate in cellular genomes. J Mol Evol 26: 74-86.
    • (1987) J Mol Evol , vol.26 , pp. 74-86
    • Ochman, H.1    Wilson, A.C.2
  • 11
    • 0037249773 scopus 로고    scopus 로고
    • Estimated minimal divergence times of the major bacterial and archaeal phyla
    • Sheridan PP, Freeman KH, Brenchley JE (2003) Estimated minimal divergence times of the major bacterial and archaeal phyla. Geomicrobiology Journal 20: 1-14.
    • (2003) Geomicrobiology Journal , vol.20 , pp. 1-14
    • Sheridan, P.P.1    Freeman, K.H.2    Brenchley, J.E.3
  • 12
    • 33745282930 scopus 로고    scopus 로고
    • Sex and virulence in Escherichia coli: An evolutionary perspective
    • Wirth T, Falush D, Lan R, Colles F, Mensa P, et al. (2006) Sex and virulence in Escherichia coli: an evolutionary perspective. Mol Microbiol 60: 1136-1151.
    • (2006) Mol Microbiol , vol.60 , pp. 1136-1151
    • Wirth, T.1    Falush, D.2    Lan, R.3    Colles, F.4    Mensa, P.5
  • 13
    • 10644230266 scopus 로고    scopus 로고
    • A genomic timescale of prokaryote evolution: Insights into the origin of methanogenesis, phototrophy, and the colonization of land
    • Battistuzzi FU, Feijao A, Hedges SB (2004) A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land. BMC Evol Biol 4: 44.
    • (2004) BMC Evol Biol , vol.4 , pp. 44
    • Battistuzzi, F.U.1    Feijao, A.2    Hedges, S.B.3
  • 14
    • 31444442779 scopus 로고    scopus 로고
    • Molecular clocks: When times are a-changin'
    • Ho SY, Larson G (2006) Molecular clocks: when times are a-changin'. Trends Genet 22: 79-83.
    • (2006) Trends Genet , vol.22 , pp. 79-83
    • Ho, S.Y.1    Larson, G.2
  • 16
    • 33644630612 scopus 로고    scopus 로고
    • Comparisons of dN/dS are time dependent for closely related bacterial genomes
    • Rocha EP, Smith JM, Hurst LD, Holden MT, Cooper JE, et al. (2006) Comparisons of dN/dS are time dependent for closely related bacterial genomes. J theor Biol 239: 226-235.
    • (2006) J theor Biol , vol.239 , pp. 226-235
    • Rocha, E.P.1    Smith, J.M.2    Hurst, L.D.3    Holden, M.T.4    Cooper, J.E.5
  • 17
    • 58149168840 scopus 로고    scopus 로고
    • The population genetics of dN/dS
    • doi:10.1371/journal.pgen.1000304
    • Kryazhimskiy S, Plotkin JB (2008) The population genetics of dN/dS. PLoS Genet 4: e1000304. doi:10.1371/journal.pgen.1000304.
    • (2008) PLoS Genet , vol.4
    • Kryazhimskiy, S.1    Plotkin, J.B.2
  • 19
    • 53849111617 scopus 로고    scopus 로고
    • Evolution, population structure and phylogeography of genetically monomorphic bacterial pathogens
    • Achtman M (2008) Evolution, population structure and phylogeography of genetically monomorphic bacterial pathogens. Annu Rev Microbiol 62: 53-70.
    • (2008) Annu Rev Microbiol , vol.62 , pp. 53-70
    • Achtman, M.1
  • 20
    • 58449131619 scopus 로고    scopus 로고
    • Rapid evolution and the importance of recombination to the gastroenteric pathogen Campylobacter jejuni
    • Wilson DJ, Gabriel E, Leatherbarrow AJ, Cheesbrough J, Gee S, et al. (2009) Rapid evolution and the importance of recombination to the gastroenteric pathogen Campylobacter jejuni. Mol Biol Evol 26: 385-397.
    • (2009) Mol Biol Evol , vol.26 , pp. 385-397
    • Wilson, D.J.1    Gabriel, E.2    Leatherbarrow, A.J.3    Cheesbrough, J.4    Gee, S.5
  • 21
    • 58149250207 scopus 로고    scopus 로고
    • A recalibrated molecular clock and independent origins for the cholera pandemic clones
    • doi:10.1371/journal.pone.0004053
    • Feng L, Reeves PR, Lan R, Ren Y, Gao C, et al. (2008) A recalibrated molecular clock and independent origins for the cholera pandemic clones. PLoS ONE 3: e4053. doi:10.1371/journal.pone.0004053.
    • (2008) PLoS ONE , vol.3
    • Feng, L.1    Reeves, P.R.2    Lan, R.3    Ren, Y.4    Gao, C.5
  • 22
    • 75649084906 scopus 로고    scopus 로고
    • Evolution of MRSA during hospital transmission and intercontinental spread
    • Harris SR, Feil EJ, Holden MT, Quail MA, Nickerson EK, et al. (2010) Evolution of MRSA during hospital transmission and intercontinental spread. Science 327: 469-474.
    • (2010) Science , vol.327 , pp. 469-474
    • Harris, S.R.1    Feil, E.J.2    Holden, M.T.3    Quail, M.A.4    Nickerson, E.K.5
  • 23
    • 57349088170 scopus 로고    scopus 로고
    • Genetic adaptation of Pseudomonas aeruginosa to the airways of cystic fibrosis patients is catalyzed by hypermutation
    • Mena A, Smith EE, Burns JL, Speert DP, Moskowitz SM, et al. (2008) Genetic adaptation of Pseudomonas aeruginosa to the airways of cystic fibrosis patients is catalyzed by hypermutation. J Bacteriol 190: 7910-7917.
    • (2008) J Bacteriol , vol.190 , pp. 7910-7917
    • Mena, A.1    Smith, E.E.2    Burns, J.L.3    Speert, D.P.4    Moskowitz, S.M.5
  • 24
  • 25
    • 34547226145 scopus 로고    scopus 로고
    • Tracking the in vivo evolution of multidrug resistance in Staphylococcus aureus by whole-genome sequencing
    • Mwangi MM, Wu SW, Zhou Y, Sieradzki K, De Lencastre H, et al. (2007) Tracking the in vivo evolution of multidrug resistance in Staphylococcus aureus by whole-genome sequencing. Proc Natl Acad Sci (USA) 104: 9451-9456.
    • (2007) Proc Natl Acad Sci (USA) , vol.104 , pp. 9451-9456
    • Mwangi, M.M.1    Wu, S.W.2    Zhou, Y.3    Sieradzki, K.4    De Lencastre, H.5
  • 26
    • 34447283332 scopus 로고    scopus 로고
    • Differential stability and trade-off effects of pathoadaptive mutations in the Escherichia coli FimH adhesin
    • Weissman SJ, Beskhlebnaya V, Chesnokova V, Chattopadhyay S, Stamm WE, et al. (2007) Differential stability and trade-off effects of pathoadaptive mutations in the Escherichia coli FimH adhesin. Infect Immun 75: 3548-3555.
    • (2007) Infect Immun , vol.75 , pp. 3548-3555
    • Weissman, S.J.1    Beskhlebnaya, V.2    Chesnokova, V.3    Chattopadhyay, S.4    Stamm, W.E.5
  • 27
    • 68149144388 scopus 로고    scopus 로고
    • High frequency of hotspot mutations in core genes of Escherichia coli due to short-term positive selection
    • Chattopadhyay S, Weissman SJ, Minin VN, Russo TA, Dykhuizen DE, et al. (2009) High frequency of hotspot mutations in core genes of Escherichia coli due to short-term positive selection. Proc Natl Acad Sci (USA) 106: 12412-12417.
    • (2009) Proc Natl Acad Sci (USA) , vol.106 , pp. 12412-12417
    • Chattopadhyay, S.1    Weissman, S.J.2    Minin, V.N.3    Russo, T.A.4    Dykhuizen, D.E.5
  • 28
    • 34249048365 scopus 로고    scopus 로고
    • Helicobacter pylori evolution and phenotypic diversification in a changing host
    • Suerbaum S, Josenhans C (2007) Helicobacter pylori evolution and phenotypic diversification in a changing host. Nat Rev Microbiol 5: 441-452.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 441-452
    • Suerbaum, S.1    Josenhans, C.2
  • 29
    • 58849086252 scopus 로고    scopus 로고
    • The peopling of the Pacific from a bacterial perspective
    • Moodley Y, Linz B, Yamaoka Y, Windsor HM, Breurec S, et al. (2009) The peopling of the Pacific from a bacterial perspective. Science 323: 527-530.
    • (2009) Science , vol.323 , pp. 527-530
    • Moodley, Y.1    Linz, B.2    Yamaoka, Y.3    Windsor, H.M.4    Breurec, S.5
  • 30
    • 33847201150 scopus 로고    scopus 로고
    • An African origin for the intimate association between humans and Helicobacter pylori
    • Linz B, Balloux F, Moodley Y, Manica A, Liu H, et al. (2007) An African origin for the intimate association between humans and Helicobacter pylori. Nature 445: 915-918.
    • (2007) Nature , vol.445 , pp. 915-918
    • Linz, B.1    Balloux, F.2    Moodley, Y.3    Manica, A.4    Liu, H.5
  • 31
    • 33746612926 scopus 로고    scopus 로고
    • Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines
    • doi:10.1371/journal. pgen.0020120
    • Eppinger M, Baar C, Linz B, Raddatz G, Lanz C, et al. (2006) Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines. PLoS Genet 2: e120. doi:10.1371/journal. pgen.0020120.
    • (2006) PLoS Genet , vol.2
    • Eppinger, M.1    Baar, C.2    Linz, B.3    Raddatz, G.4    Lanz, C.5
  • 32
    • 1842738286 scopus 로고    scopus 로고
    • Distinguishing human ethnic groups by means of sequences from Helicobacter pylori: Lessons from Ladakh
    • Wirth T, Wang X, Linz B, Novick RP, Lum JK, et al. (2004) Distinguishing human ethnic groups by means of sequences from Helicobacter pylori: lessons from Ladakh. Proc Natl Acad Sci (USA) 101: 4746-4751.
    • (2004) Proc Natl Acad Sci (USA) , vol.101 , pp. 4746-4751
    • Wirth, T.1    Wang, X.2    Linz, B.3    Novick, R.P.4    Lum, J.K.5
  • 33
    • 0037423837 scopus 로고    scopus 로고
    • Traces of human migrations in Helicobacter pylori populations
    • Falush D, Wirth T, Linz B, Pritchard JK, Stephens M, et al. (2003) Traces of human migrations in Helicobacter pylori populations. Science 299: 1582-1585.
    • (2003) Science , vol.299 , pp. 1582-1585
    • Falush, D.1    Wirth, T.2    Linz, B.3    Pritchard, J.K.4    Stephens, M.5
  • 34
    • 0032907038 scopus 로고    scopus 로고
    • Recombination and clonal groupings within Helicobacter pylori from different geographical regions
    • Achtman M, Azuma T, Berg DE, Ito Y, Morelli G, et al. (1999) Recombination and clonal groupings within Helicobacter pylori from different geographical regions. Mol Microbiol 32: 459-470.
    • (1999) Mol Microbiol , vol.32 , pp. 459-470
    • Achtman, M.1    Azuma, T.2    Berg, D.E.3    Ito, Y.4    Morelli, G.5
  • 35
    • 0035807822 scopus 로고    scopus 로고
    • Mutation frequency and biological cost of antibiotic resistance in Helicobacter pylori
    • Bjorkholm B, Sjolund M, Falk PG, Berg OG, Engstrand L, et al. (2001) Mutation frequency and biological cost of antibiotic resistance in Helicobacter pylori. Proc Natl Acad Sci (USA) 98: 14607-14612.
    • (2001) Proc Natl Acad Sci (USA) , vol.98 , pp. 14607-14612
    • Bjorkholm, B.1    Sjolund, M.2    Falk, P.G.3    Berg, O.G.4    Engstrand, L.5
  • 36
    • 33845674063 scopus 로고    scopus 로고
    • A paradigm for direct stress-induced mutation in prokaryotes
    • Kang JM, Iovine NM, Blaser MJ (2006) A paradigm for direct stress-induced mutation in prokaryotes. FASEB J 20: 2476-2485.
    • (2006) FASEB J , vol.20 , pp. 2476-2485
    • Kang, J.M.1    Iovine, N.M.2    Blaser, M.J.3
  • 37
    • 38049073294 scopus 로고    scopus 로고
    • The origins and early evolution of DNA mismatch repair genes-multiple horizontal gene transfers and co-evolution
    • Lin Z, Nei M, Ma H (2007) The origins and early evolution of DNA mismatch repair genes-multiple horizontal gene transfers and co-evolution. Nucleic Acids Res 35: 7591-7603.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7591-7603
    • Lin, Z.1    Nei, M.2    Ma, H.3
  • 38
    • 33750107653 scopus 로고    scopus 로고
    • Bacterial populations as perfect gases: Genomic integrity and diversification tensions in Helicobacter pylori
    • Kang J, Blaser MJ (2006) Bacterial populations as perfect gases: genomic integrity and diversification tensions in Helicobacter pylori. Nat Rev Microbiol 4: 826-836.
    • (2006) Nat Rev Microbiol , vol.4 , pp. 826-836
    • Kang, J.1    Blaser, M.J.2
  • 40
    • 50249129211 scopus 로고    scopus 로고
    • Rate heterogeneity in the evolution of Helicobacter pylori and the behavior of homoplastic sites
    • Meinersmann RJ, Romero-Gallo J, Blaser MJ (2008) Rate heterogeneity in the evolution of Helicobacter pylori and the behavior of homoplastic sites. Infect Genet Evol 8: 593-602.
    • (2008) Infect Genet Evol , vol.8 , pp. 593-602
    • Meinersmann, R.J.1    Romero-Gallo, J.2    Blaser, M.J.3
  • 41
    • 57049164377 scopus 로고    scopus 로고
    • Mosaic DNA imports with interspersions of recipient sequence after natural transformation of Helicobacter pylori
    • doi:10.1371/journal.pone.0003797
    • Kulick S, Moccia C, Didelot X, Falush D, Kraft C, et al. (2008) Mosaic DNA imports with interspersions of recipient sequence after natural transformation of Helicobacter pylori. PLoS ONE 3: e3797. doi:10.1371/journal.pone.0003797.
    • (2008) PLoS ONE , vol.3
    • Kulick, S.1    Moccia, C.2    Didelot, X.3    Falush, D.4    Kraft, C.5
  • 42
    • 63449095763 scopus 로고    scopus 로고
    • Natural transformation of Helicobacter pylori involves the integration of short DNA fragments interrupted by gaps of variable size
    • doi:10.1371/journal.ppat.1000337
    • Lin EA, Zhang XS, Levine SM, Gill SR, Falush D, et al. (2009) Natural transformation of Helicobacter pylori involves the integration of short DNA fragments interrupted by gaps of variable size. PLoS Pathog 5: e1000337. doi:10.1371/journal.ppat.1000337.
    • (2009) PLoS Pathog , vol.5
    • Lin, E.A.1    Zhang, X.S.2    Levine, S.M.3    Gill, S.R.4    Falush, D.5
  • 43
    • 0028967698 scopus 로고
    • Longterm colonization with single and multiple strains of Helicobacter pylori assessed by DNA fingerprinting
    • Taylor NS, Fox JG, Akopyants NS, Berg DE, Thompson N, et al. (1995) Longterm colonization with single and multiple strains of Helicobacter pylori assessed by DNA fingerprinting. J Clin Microbiol 33: 918-923.
    • (1995) J Clin Microbiol , vol.33 , pp. 918-923
    • Taylor, N.S.1    Fox, J.G.2    Akopyants, N.S.3    Berg, D.E.4    Thompson, N.5
  • 45
    • 0032944936 scopus 로고    scopus 로고
    • Emergence of recombinant strains of Helicobacter pylori during human infection
    • Kersulyte D, Chalkauskas H, Berg DE (1999) Emergence of recombinant strains of Helicobacter pylori during human infection. Mol Microbiol 31: 31-43.
    • (1999) Mol Microbiol , vol.31 , pp. 31-43
    • Kersulyte, D.1    Chalkauskas, H.2    Berg, D.E.3
  • 46
    • 4844221579 scopus 로고    scopus 로고
    • Genetic and transmission analysis of Helicobacter pylori strains within a family
    • Raymond J, Thiberg JM, Chevalier C, Kalach N, Bergeret M, et al. (2004) Genetic and transmission analysis of Helicobacter pylori strains within a family. Emerg Infect Dis 10: 1816-1821.
    • (2004) Emerg Infect Dis , vol.10 , pp. 1816-1821
    • Raymond, J.1    Thiberg, J.M.2    Chevalier, C.3    Kalach, N.4    Bergeret, M.5
  • 47
    • 55449117050 scopus 로고    scopus 로고
    • Horizontal versus familial transmission of Helicobacter pylori
    • doi:10.1371/journal.ppat.1000180
    • Schwarz S, Morelli G, Kusecek B, Manica A, Balloux F, et al. (2008) Horizontal versus familial transmission of Helicobacter pylori. PLoS Pathog 4: e1000180. doi:10.1371/journal.ppat.1000180.
    • (2008) PLoS Pathog , vol.4
    • Schwarz, S.1    Morelli, G.2    Kusecek, B.3    Manica, A.4    Balloux, F.5
  • 48
    • 66749184720 scopus 로고    scopus 로고
    • Pediatric Helicobacter pylori isolates display distinct gene coding capacities and virulence gene marker profiles
    • Talarico S, Gold BD, Fero J, Thompson DT, Guarner J, et al. (2009) Pediatric Helicobacter pylori isolates display distinct gene coding capacities and virulence gene marker profiles. J Clin Microbiol 47: 1680-1688.
    • (2009) J Clin Microbiol , vol.47 , pp. 1680-1688
    • Talarico, S.1    Gold, B.D.2    Fero, J.3    Thompson, D.T.4    Guarner, J.5
  • 49
    • 0035909914 scopus 로고    scopus 로고
    • Recombination and mutation during long-term gastric colonization by Helicobacter pylori: Estimates of clock rates, recombination size and minimal age
    • Falush D, Kraft C, Taylor NS, Correa P, Fox JG, et al. (2001) Recombination and mutation during long-term gastric colonization by Helicobacter pylori: Estimates of clock rates, recombination size and minimal age. Proc Natl Acad Sci (U S A) 98: 15056-15061.
    • (2001) Proc Natl Acad Sci (U S A) , vol.98 , pp. 15056-15061
    • Falush, D.1    Kraft, C.2    Taylor, N.S.3    Correa, P.4    Fox, J.G.5
  • 50
    • 0033983312 scopus 로고    scopus 로고
    • Quasispecies development of Helicobacter pylori observed in paired isolates obtained years apart from the same host
    • Kuipers EJ, Israel DA, Kusters JG, Gerrits MM, Weel J, et al. (2000) Quasispecies development of Helicobacter pylori observed in paired isolates obtained years apart from the same host. J Infect Dis 181: 273-282.
    • (2000) J Infect Dis , vol.181 , pp. 273-282
    • Kuipers, E.J.1    Israel, D.A.2    Kusters, J.G.3    Gerrits, M.M.4    Weel, J.5
  • 51
    • 34249027580 scopus 로고    scopus 로고
    • Inference of bacterial microevolution using multilocus sequence data
    • Didelot X, Falush D (2007) Inference of bacterial microevolution using multilocus sequence data. Genetics 175: 1251-1266.
    • (2007) Genetics , vol.175 , pp. 1251-1266
    • Didelot, X.1    Falush, D.2
  • 52
    • 0036964474 scopus 로고    scopus 로고
    • Approximate Bayesian computation in population genetics
    • Beaumont MA, Zhang WY, Balding DJ (2002) Approximate Bayesian computation in population genetics. Genetics 162: 2025-2035.
    • (2002) Genetics , vol.162 , pp. 2025-2035
    • Beaumont, M.A.1    Zhang, W.Y.2    Balding, D.J.3
  • 53
    • 0032735986 scopus 로고    scopus 로고
    • Population growth of human Y chromosomes: A study of Y chromosome microsatellites
    • Pritchard JK, Seielstad MT, Perez-Lezaun A, Feldman MW (1999) Population growth of human Y chromosomes: a study of Y chromosome microsatellites. Mol Biol Evol 16: 1791-1798.
    • (1999) Mol Biol Evol , vol.16 , pp. 1791-1798
    • Pritchard, J.K.1    Seielstad, M.T.2    Perez-Lezaun, A.3    Feldman, M.W.4
  • 54
    • 0037129204 scopus 로고    scopus 로고
    • Using the fossil record to estimate the age of the last common ancestor of extant primates
    • Tavare S, Marshall CR, Will O, Soligo C, Martin RD (2002) Using the fossil record to estimate the age of the last common ancestor of extant primates. Nature 416: 726-729.
    • (2002) Nature , vol.416 , pp. 726-729
    • Tavare, S.1    Marshall, C.R.2    Will, O.3    Soligo, C.4    Martin, R.D.5
  • 55
    • 29444451610 scopus 로고    scopus 로고
    • Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes
    • Voight BF, Adams AM, Frisse LA, Qian Y, Hudson RR, et al. (2005) Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes. Proc Natl Acad Sci (USA) 102: 18508-18513.
    • (2005) Proc Natl Acad Sci (USA) , vol.102 , pp. 18508-18513
    • Voight, B.F.1    Adams, A.M.2    Frisse, L.A.3    Qian, Y.4    Hudson, R.R.5
  • 57
    • 25444484077 scopus 로고    scopus 로고
    • Posterior predictive assessment of model fitness via realized discrepancies
    • Gelman A, Meng XL, Stern H (1996) Posterior predictive assessment of model fitness via realized discrepancies. Statistica Sinica 6: 733-760.
    • (1996) Statistica Sinica , vol.6 , pp. 733-760
    • Gelman, A.1    Meng, X.L.2    Stern, H.3
  • 58
    • 56049099553 scopus 로고    scopus 로고
    • Multilocus patterns of nucleotide polymorphism and the demographic history of Populus tremula
    • Ingvarsson PK (2008) Multilocus patterns of nucleotide polymorphism and the demographic history of Populus tremula. Genetics 180: 329-340.
    • (2008) Genetics , vol.180 , pp. 329-340
    • Ingvarsson, P.K.1
  • 59
    • 33644763127 scopus 로고    scopus 로고
    • Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster
    • Thornton K, Andolfatto P (2006) Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster. Genetics 172: 1607-1619.
    • (2006) Genetics , vol.172 , pp. 1607-1619
    • Thornton, K.1    Andolfatto, P.2
  • 60
    • 76549096678 scopus 로고    scopus 로고
    • The comparative genomics of viral emergence
    • Holmes EC (2010) The comparative genomics of viral emergence. Proc Natl Acad Sci (USA) 107 Supplement 1: 1742-1746.
    • (2010) Proc Natl Acad Sci (USA) , vol.107 , Issue.SUPPL. 1 , pp. 1742-1746
    • Holmes, E.C.1
  • 61
    • 13244267001 scopus 로고    scopus 로고
    • mlstdbNet - distributed multi-locus sequence typing (MLST) databases
    • Jolley KA, Chan MS, Maiden MC (2004) mlstdbNet - distributed multi-locus sequence typing (MLST) databases. BMC Bioinformatics 5: 86.
    • (2004) BMC Bioinformatics , vol.5 , pp. 86
    • Jolley, K.A.1    Chan, M.S.2    Maiden, M.C.3
  • 62
    • 73349140515 scopus 로고    scopus 로고
    • Quantitative prediction of molecular clock and Ka/ Ks at short timescales
    • Peterson GI, Masel J (2009) Quantitative prediction of molecular clock and Ka/ Ks at short timescales. Mol Biol Evol 26: 2595-2603.
    • (2009) Mol Biol Evol , vol.26 , pp. 2595-2603
    • Peterson, G.I.1    Masel, J.2
  • 63
    • 0030835739 scopus 로고    scopus 로고
    • The complete genome sequence of the gastric pathogen Helicobacter pylori
    • Tomb JF, White O, Kerlavage AR, Clayton RA, Sutton GG, et al. (1997) The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388: 539-547.
    • (1997) Nature , vol.388 , pp. 539-547
    • Tomb, J.F.1    White, O.2    Kerlavage, A.R.3    Clayton, R.A.4    Sutton, G.G.5
  • 64
    • 33645776968 scopus 로고    scopus 로고
    • The evolutionary diversification of cyanobacteria: Molecular-phylogenetic and paleontological perspectives
    • Tomitani A, Knoll AH, Cavanaugh CM, Ohno T (2006) The evolutionary diversification of cyanobacteria: molecular-phylogenetic and paleontological perspectives. Proc Natl Acad Sci (USA) 103: 5442-5447.
    • (2006) Proc Natl Acad Sci (USA) , vol.103 , pp. 5442-5447
    • Tomitani, A.1    Knoll, A.H.2    Cavanaugh, C.M.3    Ohno, T.4
  • 65
    • 0033784751 scopus 로고    scopus 로고
    • Bangiomorpha pubescens n. gen., n. sp.: Implications for the evolution of sex, multicellularity, and the Mesoproterozoic/Neoproterozoic radiation of eukaryotes
    • Butterfield NJ (2000) Bangiomorpha pubescens n. gen., n. sp.: implications for the evolution of sex, multicellularity, and the Mesoproterozoic/Neoproterozoic radiation of eukaryotes. Paleobiology 26: 386-404.
    • (2000) Paleobiology , vol.26 , pp. 386-404
    • Butterfield, N.J.1
  • 66
    • 0036838467 scopus 로고    scopus 로고
    • Volcanic gases, black smokers, and the Great Oxidation Event
    • Holland HD (2002) Volcanic gases, black smokers, and the Great Oxidation Event. Geochimica et Cosmochimica Acta 66: 3811-3826.
    • (2002) Geochimica et Cosmochimica Acta , vol.66 , pp. 3811-3826
    • Holland, H.D.1
  • 67
    • 0035811487 scopus 로고    scopus 로고
    • Morphological and ecological complexity in early eukaryotic ecosystems
    • Javaux EJ, Knoll AH, Walter MR (2001) Morphological and ecological complexity in early eukaryotic ecosystems. Nature 412: 66-69.
    • (2001) Nature , vol.412 , pp. 66-69
    • Javaux, E.J.1    Knoll, A.H.2    Walter, M.R.3
  • 68
    • 77957374766 scopus 로고    scopus 로고
    • Date-a-Clade service for the molecular tree of life
    • Date-a-Clade service for the molecular tree of life (2009) Age of crown Bilateria. http://www.fossilrecord.net/dateaclade/clade_crown_Bilateria.html.
    • (2009) Age of Crown Bilateria
  • 69
    • 77957332101 scopus 로고    scopus 로고
    • Date-a-Clade service for the molecular tree of life
    • Date-a-Clade service for the molecular tree of life (2009) Age of mammals. http://www.fossilrecord.net/dateaclade/clade-platypus-elephant.html.
    • (2009) Age of Mammals
  • 70
    • 77957357983 scopus 로고    scopus 로고
    • Tree of Life web project
    • Tree of Life web project (2009) Age of legumes. http://tolweb.org/Fabaceae/21093.
    • (2009) Age of Legumes
  • 71
    • 58449126084 scopus 로고    scopus 로고
    • The dynamics and time scale of ongoing genomic erosion in symbiotic bacteria
    • Moran NA, McLaughlin HJ, Sorek R (2009) The dynamics and time scale of ongoing genomic erosion in symbiotic bacteria. Science 323: 379-382.
    • (2009) Science , vol.323 , pp. 379-382
    • Moran, N.A.1    McLaughlin, H.J.2    Sorek, R.3


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