-
1
-
-
0037057683
-
Helicobacter pylori infection
-
Suerbaum S, Michetti P, (2002) Helicobacter pylori infection. N Engl J Med 347: 1175-1186.
-
(2002)
N Engl J Med
, vol.347
, pp. 1175-1186
-
-
Suerbaum, S.1
Michetti, P.2
-
2
-
-
33847201150
-
An African origin for the intimate association between humans and Helicobacter pylori
-
Linz B, Balloux F, Moodley Y, Manica A, Liu H, et al. (2007) An African origin for the intimate association between humans and Helicobacter pylori. Nature 445: 915-918.
-
(2007)
Nature
, vol.445
, pp. 915-918
-
-
Linz, B.1
Balloux, F.2
Moodley, Y.3
Manica, A.4
Liu, H.5
-
3
-
-
77958168623
-
Type IV secretion systems in Helicobacter pylori
-
In: Yamaoka Y, editors, Caister Academic Press
-
Fischer W, Karnholz A, Jimenez-Soto LF, Haas R, (2008) Type IV secretion systems in Helicobacter pylori. In: Yamaoka Y, editors. Helicobacter pylori: molecular genetics and cellular biology Caister Academic Press.
-
(2008)
Helicobacter Pylori: Molecular Genetics and Cellular Biology
-
-
Fischer, W.1
Karnholz, A.2
Jimenez-Soto, L.F.3
Haas, R.4
-
4
-
-
0037169076
-
SHP-2 tyrosine phosphatase as an intracellular target of Helicobacter pylori CagA protein
-
Higashi H, Tsutsumi R, Muto S, Sugiyama T, Azuma T, et al. (2002) SHP-2 tyrosine phosphatase as an intracellular target of Helicobacter pylori CagA protein. Science 295: 683-686.
-
(2002)
Science
, vol.295
, pp. 683-686
-
-
Higashi, H.1
Tsutsumi, R.2
Muto, S.3
Sugiyama, T.4
Azuma, T.5
-
5
-
-
0033456273
-
Altered states: involvement of phosphorylated CagA in the induction of host cellular growth changes by Helicobacter pylori
-
Segal ED, Cha J, Lo J, Falkow S, Tompkins LS, (1999) Altered states: involvement of phosphorylated CagA in the induction of host cellular growth changes by Helicobacter pylori. Proc Natl Acad Sci U S A 96: 14559-14564.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 14559-14564
-
-
Segal, E.D.1
Cha, J.2
Lo, J.3
Falkow, S.4
Tompkins, L.S.5
-
6
-
-
1942540791
-
Atypical PKC phosphorylates PAR-1 kinases to regulate localization and activity
-
Hurov JB, Watkins JL, Piwnica-Worms H, (2004) Atypical PKC phosphorylates PAR-1 kinases to regulate localization and activity. Curr Biol 14: 736-741.
-
(2004)
Curr Biol
, vol.14
, pp. 736-741
-
-
Hurov, J.B.1
Watkins, J.L.2
Piwnica-Worms, H.3
-
7
-
-
4344699150
-
aPKC acts upstream of PAR-1b in both the establishment and maintenance of mammalian epithelial polarity
-
Suzuki A, Hirata M, Kamimura K, Maniwa R, Yamanaka T, et al. (2004) aPKC acts upstream of PAR-1b in both the establishment and maintenance of mammalian epithelial polarity. Curr Biol 14: 1425-1435.
-
(2004)
Curr Biol
, vol.14
, pp. 1425-1435
-
-
Suzuki, A.1
Hirata, M.2
Kamimura, K.3
Maniwa, R.4
Yamanaka, T.5
-
8
-
-
34249090814
-
Helicobacter pylori CagA targets PAR1/MARK kinase to disrupt epithelial cell polarity
-
Saadat I, Higashi H, Obuse C, Umeda M, Murata-Kamiya N, et al. (2007) Helicobacter pylori CagA targets PAR1/MARK kinase to disrupt epithelial cell polarity. Nature 447: 330-333.
-
(2007)
Nature
, vol.447
, pp. 330-333
-
-
Saadat, I.1
Higashi, H.2
Obuse, C.3
Umeda, M.4
Murata-Kamiya, N.5
-
9
-
-
38849168048
-
Analysis of detergent-resistant membranes of Helicobacter pylori infected gastric adenocarcinoma cells reveals a role for MARK2/Par1b in CagA-mediated disruption of cellular polarity
-
Zeaiter Z, Cohen D, Musch A, Bagnoli F, Covacci A, et al. (2008) Analysis of detergent-resistant membranes of Helicobacter pylori infected gastric adenocarcinoma cells reveals a role for MARK2/Par1b in CagA-mediated disruption of cellular polarity. Cell Microbiol 10: 781-794.
-
(2008)
Cell Microbiol
, vol.10
, pp. 781-794
-
-
Zeaiter, Z.1
Cohen, D.2
Musch, A.3
Bagnoli, F.4
Covacci, A.5
-
10
-
-
0037195107
-
Biological activity of the Helicobacter pylori virulence factor CagA is determined by variation in the tyrosine phosphorylation sites
-
Higashi H, Tsutsumi R, Fujita A, Yamazaki S, Asaka M, et al. (2002) Biological activity of the Helicobacter pylori virulence factor CagA is determined by variation in the tyrosine phosphorylation sites. Proc Natl Acad Sci U S A 99: 14428-14433.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 14428-14433
-
-
Higashi, H.1
Tsutsumi, R.2
Fujita, A.3
Yamazaki, S.4
Asaka, M.5
-
11
-
-
33747887088
-
Relationship between the diversity of the cagA gene of Helicobacter pylori and gastric cancer in Okinawa, Japan
-
Satomi S, Yamakawa A, Matsunaga S, Masaki R, Inagaki T, et al. (2006) Relationship between the diversity of the cagA gene of Helicobacter pylori and gastric cancer in Okinawa, Japan. J Gastroenterol 41: 668-673.
-
(2006)
J Gastroenterol
, vol.41
, pp. 668-673
-
-
Satomi, S.1
Yamakawa, A.2
Matsunaga, S.3
Masaki, R.4
Inagaki, T.5
-
12
-
-
38949199463
-
Transgenic expression of Helicobacter pylori CagA induces gastrointestinal and hematopoietic neoplasms in mouse
-
Ohnishi N, Yuasa H, Tanaka S, Sawa H, Miura M, et al. (2008) Transgenic expression of Helicobacter pylori CagA induces gastrointestinal and hematopoietic neoplasms in mouse. Proc Natl Acad Sci U S A 105: 1003-1008.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 1003-1008
-
-
Ohnishi, N.1
Yuasa, H.2
Tanaka, S.3
Sawa, H.4
Miura, M.5
-
13
-
-
70350743132
-
Differential oncogenic potential of geographically distinct Helicobacter pylori CagA isoforms in mice
-
Miura M, Ohnishi N, Tanaka S, Yanagiya K, Hatakeyama M, (2009) Differential oncogenic potential of geographically distinct Helicobacter pylori CagA isoforms in mice. Int J Cancer 125: 2497-2504.
-
(2009)
Int J Cancer
, vol.125
, pp. 2497-2504
-
-
Miura, M.1
Ohnishi, N.2
Tanaka, S.3
Yanagiya, K.4
Hatakeyama, M.5
-
14
-
-
58249083314
-
Helicobacter pylori CagA phosphorylation-independent function in epithelial proliferation and inflammation
-
Suzuki M, Mimuro H, Kiga K, Fukumatsu M, Ishijima N, et al. (2009) Helicobacter pylori CagA phosphorylation-independent function in epithelial proliferation and inflammation. Cell Host Microbe 5: 23-34.
-
(2009)
Cell Host Microbe
, vol.5
, pp. 23-34
-
-
Suzuki, M.1
Mimuro, H.2
Kiga, K.3
Fukumatsu, M.4
Ishijima, N.5
-
15
-
-
33845943988
-
Structural basis and functional consequence of Helicobacter pylori CagA multimerization in cells
-
Ren S, Higashi H, Lu H, Azuma T, Hatakeyama M, (2006) Structural basis and functional consequence of Helicobacter pylori CagA multimerization in cells. J Biol Chem 281: 32344-32352.
-
(2006)
J Biol Chem
, vol.281
, pp. 32344-32352
-
-
Ren, S.1
Higashi, H.2
Lu, H.3
Azuma, T.4
Hatakeyama, M.5
-
16
-
-
78650196039
-
Anthropological and clinical implications for the structural diversity of the Helicobacter pylori CagA oncoprotein
-
Hatakeyama M, (2010) Anthropological and clinical implications for the structural diversity of the Helicobacter pylori CagA oncoprotein. Cancer science 102: 36-43.
-
(2010)
Cancer Science
, vol.102
, pp. 36-43
-
-
Hatakeyama, M.1
-
17
-
-
70450170758
-
A comprehensive sequence and disease correlation analyses for the C-terminal region of CagA protein of Helicobacter pylori
-
Xia Y, Yamaoka Y, Zhu Q, Matha I, Gao X, (2009) A comprehensive sequence and disease correlation analyses for the C-terminal region of CagA protein of Helicobacter pylori. PLoS One 4: e7736.
-
(2009)
PLoS One
, vol.4
-
-
Xia, Y.1
Yamaoka, Y.2
Zhu, Q.3
Matha, I.4
Gao, X.5
-
18
-
-
23744465646
-
Distinct diversity of vacA, cagA, and cagE genes of Helicobacter pylori associated with peptic ulcer in Japan
-
Yamazaki S, Yamakawa A, Okuda T, Ohtani M, Suto H, et al. (2005) Distinct diversity of vacA, cagA, and cagE genes of Helicobacter pylori associated with peptic ulcer in Japan. J Clin Microbiol 43: 3906-3916.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 3906-3916
-
-
Yamazaki, S.1
Yamakawa, A.2
Okuda, T.3
Ohtani, M.4
Suto, H.5
-
19
-
-
0035909914
-
Recombination and mutation during long-term gastric colonization by Helicobacter pylori: estimates of clock rates, recombination size, and minimal age
-
Falush D, Kraft C, Taylor NS, Correa P, Fox JG, et al. (2001) Recombination and mutation during long-term gastric colonization by Helicobacter pylori: estimates of clock rates, recombination size, and minimal age. Proc Natl Acad Sci U S A 98: 15056-15061.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 15056-15061
-
-
Falush, D.1
Kraft, C.2
Taylor, N.S.3
Correa, P.4
Fox, J.G.5
-
20
-
-
55449115425
-
Comparative and evolutionary analysis of the bacterial homologous recombination systems
-
Rocha EP, Cornet E, Michel B, (2005) Comparative and evolutionary analysis of the bacterial homologous recombination systems. PLoS Genet 1: e15.
-
(2005)
PLoS Genet
, vol.1
-
-
Rocha, E.P.1
Cornet, E.2
Michel, B.3
-
21
-
-
0029053856
-
Dependence of frequency of homologous recombination on the homology length
-
Fujitani Y, Yamamoto K, Kobayashi I, (1995) Dependence of frequency of homologous recombination on the homology length. Genetics 140: 797-809.
-
(1995)
Genetics
, vol.140
, pp. 797-809
-
-
Fujitani, Y.1
Yamamoto, K.2
Kobayashi, I.3
-
22
-
-
0022689021
-
Homologous recombination in Escherichia coli: dependence on substrate length and homology
-
Shen P, Huang HV, (1986) Homologous recombination in Escherichia coli: dependence on substrate length and homology. Genetics 112: 441-457.
-
(1986)
Genetics
, vol.112
, pp. 441-457
-
-
Shen, P.1
Huang, H.V.2
-
23
-
-
0002449314
-
Illegitimate recombination in bacteria
-
In: Berg DE, Howe MM, editors, American Society for Microbiology
-
Ehrlich SD, (1989) Illegitimate recombination in bacteria. In: Berg DE, Howe MM, editors. Mobile DNA American Society for Microbiology pp. 799-832.
-
(1989)
Mobile DNA
, pp. 799-832
-
-
Ehrlich, S.D.1
-
24
-
-
77952309317
-
Genome comparison and context analysis reveals putative mobile forms of restriction-modification systems and related rearrangements
-
Furuta Y, Abe K, Kobayashi I, (2010) Genome comparison and context analysis reveals putative mobile forms of restriction-modification systems and related rearrangements. Nucleic Acids Res 38: 2428-2443.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 2428-2443
-
-
Furuta, Y.1
Abe, K.2
Kobayashi, I.3
-
25
-
-
0034707190
-
Insertion with long target duplication: a mechanism for gene mobility suggested from comparison of two related bacterial genomes
-
Nobusato A, Uchiyama I, Ohashi S, Kobayashi I, (2000) Insertion with long target duplication: a mechanism for gene mobility suggested from comparison of two related bacterial genomes. Gene 259: 99-108.
-
(2000)
Gene
, vol.259
, pp. 99-108
-
-
Nobusato, A.1
Uchiyama, I.2
Ohashi, S.3
Kobayashi, I.4
-
26
-
-
70249146203
-
Helicobacter Pylori's plasticity zones are novel transposable elements
-
Kersulyte D, Lee W, Subramaniam D, Anant S, Herrera P, et al. (2009) Helicobacter Pylori's plasticity zones are novel transposable elements. PLoS One 4: e6859.
-
(2009)
PLoS One
, vol.4
-
-
Kersulyte, D.1
Lee, W.2
Subramaniam, D.3
Anant, S.4
Herrera, P.5
-
27
-
-
79952129488
-
Birth and death of genes linked to chromosomal inversion
-
Furuta Y, Kawai M, Yahara K, Takahashi N, Handa N, et al. (2011) Birth and death of genes linked to chromosomal inversion. Proc Natl Acad Sci U S A 108: 1501-1506.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 1501-1506
-
-
Furuta, Y.1
Kawai, M.2
Yahara, K.3
Takahashi, N.4
Handa, N.5
-
28
-
-
1942441432
-
The diversity within an expanded and redefined repertoire of phase-variable genes in Helicobacter pylori
-
Salaun L, (2004) The diversity within an expanded and redefined repertoire of phase-variable genes in Helicobacter pylori. Microbiology 150: 817-830.
-
(2004)
Microbiology
, vol.150
, pp. 817-830
-
-
Salaun, L.1
-
29
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
30
-
-
0042943204
-
Natural variation in populations of persistently colonizing bacteria affect human host cell phenotype
-
Aras RA, Lee Y, Kim SK, Israel D, Peek RM Jr, et al. (2003) Natural variation in populations of persistently colonizing bacteria affect human host cell phenotype. J Infect Dis 188: 486-496.
-
(2003)
J Infect Dis
, vol.188
, pp. 486-496
-
-
Aras, R.A.1
Lee, Y.2
Kim, S.K.3
Israel, D.4
Peek Jr., R.M.5
-
31
-
-
0032754046
-
Effect of DNA sequence divergence on homologous recombination as analyzed by a random-walk model
-
Fujitani Y, Kobayashi I, (1999) Effect of DNA sequence divergence on homologous recombination as analyzed by a random-walk model. Genetics 153: 1973-1988.
-
(1999)
Genetics
, vol.153
, pp. 1973-1988
-
-
Fujitani, Y.1
Kobayashi, I.2
-
32
-
-
54949087520
-
Structural and functional diversity in the PAR1b/MARK2-binding region of Helicobacter pylori CagA
-
Lu HS, Saito Y, Umeda M, Murata-Kamiya N, Zhang HM, et al. (2008) Structural and functional diversity in the PAR1b/MARK2-binding region of Helicobacter pylori CagA. Cancer Sci 99: 2004-2011.
-
(2008)
Cancer Sci
, vol.99
, pp. 2004-2011
-
-
Lu, H.S.1
Saito, Y.2
Umeda, M.3
Murata-Kamiya, N.4
Zhang, H.M.5
-
33
-
-
2142738304
-
WebLogo: a sequence logo generator
-
Crooks GE, Hon G, Chandonia JM, Brenner SE, (2004) WebLogo: a sequence logo generator. Genome Res 14: 1188-1190.
-
(2004)
Genome Res
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
35
-
-
78649729116
-
Helicobacter pylori from Peruvian Amerindians: Traces of Human Migrations in Strains from Remote Amazon, and Genome Sequence of an Amerind Strain
-
Kersulyte D, Kalia A, Gilman RH, Mendez M, Herrera P, et al. (2010) Helicobacter pylori from Peruvian Amerindians: Traces of Human Migrations in Strains from Remote Amazon, and Genome Sequence of an Amerind Strain. PLoS One 5: e15076.
-
(2010)
PLoS One
, vol.5
-
-
Kersulyte, D.1
Kalia, A.2
Gilman, R.H.3
Mendez, M.4
Herrera, P.5
-
36
-
-
77954025815
-
Host-interactive genes in Amerindian Helicobacter pylori diverge from their Old World homologs and mediate inflammatory responses
-
Mane SP, Dominguez-Bello MG, Blaser MJ, Sobral BW, Hontecillas R, et al. (2010) Host-interactive genes in Amerindian Helicobacter pylori diverge from their Old World homologs and mediate inflammatory responses. J Bacteriol 192: 3078-3092.
-
(2010)
J Bacteriol
, vol.192
, pp. 3078-3092
-
-
Mane, S.P.1
Dominguez-Bello, M.G.2
Blaser, M.J.3
Sobral, B.W.4
Hontecillas, R.5
-
37
-
-
0037165666
-
Helicobacter pylori in North and South America before Columbus
-
Yamaoka Y, Orito E, Mizokami M, Gutierrez O, Saitou N, et al. (2002) Helicobacter pylori in North and South America before Columbus. FEBS Lett 517: 180-184.
-
(2002)
FEBS Lett
, vol.517
, pp. 180-184
-
-
Yamaoka, Y.1
Orito, E.2
Mizokami, M.3
Gutierrez, O.4
Saitou, N.5
-
38
-
-
77952880166
-
Clinical relevance of cagPAI intactness in Helicobacter pylori isolates from Vietnam
-
Nguyen LT, Uchida T, Tsukamoto Y, Trinh TD, Ta L, et al. (2010) Clinical relevance of cagPAI intactness in Helicobacter pylori isolates from Vietnam. Eur J Clin Microbiol Infect Dis 29: 651-660.
-
(2010)
Eur J Clin Microbiol Infect Dis
, vol.29
, pp. 651-660
-
-
Nguyen, L.T.1
Uchida, T.2
Tsukamoto, Y.3
Trinh, T.D.4
Ta, L.5
-
39
-
-
71549135542
-
Diverse characteristics of the CagA gene of Helicobacter pylori strains collected from patients from southern vietnam with gastric cancer and peptic ulcer
-
Truong BX, Mai VT, Tanaka H, Ly le T, Thong TM, et al. (2009) Diverse characteristics of the CagA gene of Helicobacter pylori strains collected from patients from southern vietnam with gastric cancer and peptic ulcer. J Clin Microbiol 47: 4021-4028.
-
(2009)
J Clin Microbiol
, vol.47
, pp. 4021-4028
-
-
Truong, B.X.1
Mai, V.T.2
Tanaka, H.3
Ly le, T.4
Thong, T.M.5
-
40
-
-
77449144044
-
Helicobacter pylori CagA inhibits PAR1-MARK family kinases by mimicking host substrates
-
Nesić D, Miller MC, Quinkert ZT, Stein M, Chait BT, et al. (2010) Helicobacter pylori CagA inhibits PAR1-MARK family kinases by mimicking host substrates. Nature structural & molecular biology 17: 130-132.
-
(2010)
Nature Structural & Molecular Biology
, vol.17
, pp. 130-132
-
-
Nesić, D.1
Miller, M.C.2
Quinkert, Z.T.3
Stein, M.4
Chait, B.T.5
-
41
-
-
69249108120
-
Role of partitioning-defective 1/microtubule affinity-regulating kinases in the morphogenetic activity of Helicobacter pylori CagA
-
Lu H, Murata-Kamiya N, Saito Y, Hatakeyama M, (2009) Role of partitioning-defective 1/microtubule affinity-regulating kinases in the morphogenetic activity of Helicobacter pylori CagA. J Biol Chem 284: 23024-23036.
-
(2009)
J Biol Chem
, vol.284
, pp. 23024-23036
-
-
Lu, H.1
Murata-Kamiya, N.2
Saito, Y.3
Hatakeyama, M.4
-
43
-
-
79955883801
-
Evolution in an oncogenic bacterial species with extreme genome plasticity: Helicobacter pylori East Asian genomes
-
in press
-
Kawai M, Furuta Y, Yahara K, Tsuru T, Oshima K, et al. (2011) Evolution in an oncogenic bacterial species with extreme genome plasticity: Helicobacter pylori East Asian genomes. BMC Microbiol in press.
-
(2011)
BMC Microbiol
-
-
Kawai, M.1
Furuta, Y.2
Yahara, K.3
Tsuru, T.4
Oshima, K.5
-
44
-
-
0033806018
-
Functional organization and insertion specificity of IS607, a chimeric element of Helicobacter pylori
-
Kersulyte D, Mukhopadhyay AK, Shirai M, Nakazawa T, Berg DE, (2000) Functional organization and insertion specificity of IS607, a chimeric element of Helicobacter pylori. J Bacteriol 182: 5300-5308.
-
(2000)
J Bacteriol
, vol.182
, pp. 5300-5308
-
-
Kersulyte, D.1
Mukhopadhyay, A.K.2
Shirai, M.3
Nakazawa, T.4
Berg, D.E.5
-
45
-
-
7744237424
-
Sequence organization and insertion specificity of the novel chimeric ISHp609 transposable element of Helicobacter pylori
-
Kersulyte D, Kalia A, Zhang M, Lee HK, Subramaniam D, et al. (2004) Sequence organization and insertion specificity of the novel chimeric ISHp609 transposable element of Helicobacter pylori. J Bacteriol 186: 7521-7528.
-
(2004)
J Bacteriol
, vol.186
, pp. 7521-7528
-
-
Kersulyte, D.1
Kalia, A.2
Zhang, M.3
Lee, H.K.4
Subramaniam, D.5
-
46
-
-
0032569979
-
Novel sequence organization and insertion specificity of IS605 and IS606: chimaeric transposable elements of Helicobacter pylori
-
Kersulyte D, Akopyants NS, Clifton SW, Roe BA, Berg DE, (1998) Novel sequence organization and insertion specificity of IS605 and IS606: chimaeric transposable elements of Helicobacter pylori. Gene 223: 175-186.
-
(1998)
Gene
, vol.223
, pp. 175-186
-
-
Kersulyte, D.1
Akopyants, N.S.2
Clifton, S.W.3
Roe, B.A.4
Berg, D.E.5
-
47
-
-
33744942629
-
Genome comparison in silico in Neisseria suggests integration of filamentous bacteriophages by their own transposase
-
Kawai M, Uchiyama I, Kobayashi I, (2005) Genome comparison in silico in Neisseria suggests integration of filamentous bacteriophages by their own transposase. DNA Res 12: 389-401.
-
(2005)
DNA Res
, vol.12
, pp. 389-401
-
-
Kawai, M.1
Uchiyama, I.2
Kobayashi, I.3
-
48
-
-
77955292149
-
Helicobacter pylori exploits host membrane phosphatidylserine for delivery, localization, and pathophysiological action of the CagA oncoprotein
-
Murata-Kamiya N, Kikuchi K, Hayashi T, Higashi H, Hatakeyama M, (2010) Helicobacter pylori exploits host membrane phosphatidylserine for delivery, localization, and pathophysiological action of the CagA oncoprotein. Cell Host Microbe 7: 399-411.
-
(2010)
Cell Host Microbe
, vol.7
, pp. 399-411
-
-
Murata-Kamiya, N.1
Kikuchi, K.2
Hayashi, T.3
Higashi, H.4
Hatakeyama, M.5
-
49
-
-
77957335214
-
A global overview of the genetic and functional diversity in the Helicobacter pylori cag pathogenicity island
-
Olbermann P, Josenhans C, Moodley Y, Uhr M, Stamer C, et al. (2010) A global overview of the genetic and functional diversity in the Helicobacter pylori cag pathogenicity island. PLoS genetics 6: e1001069.
-
(2010)
PLoS Genetics
, vol.6
-
-
Olbermann, P.1
Josenhans, C.2
Moodley, Y.3
Uhr, M.4
Stamer, C.5
-
50
-
-
77954033702
-
Evolution of bacterial genes: evidences of positive Darwinian selection and fixation of base substitutions in virulence genes of Helicobacter pylori
-
Torres-Morquecho A, Giono-Cerezo S, Camorlinga-Ponce M, Vargas-Mendoza CF, Torres J, (2010) Evolution of bacterial genes: evidences of positive Darwinian selection and fixation of base substitutions in virulence genes of Helicobacter pylori. Infect Genet Evol 10: 764-776.
-
(2010)
Infect Genet Evol
, vol.10
, pp. 764-776
-
-
Torres-Morquecho, A.1
Giono-Cerezo, S.2
Camorlinga-Ponce, M.3
Vargas-Mendoza, C.F.4
Torres, J.5
-
51
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang Z, (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
52
-
-
79251649504
-
Estimating selection pressures on alignments of coding sequences
-
In: Lemey P, Salemi M, Vandamme AM, editors, Cambridge University Press Cambridge
-
Pond SLK, Poon AFY, Frost SDW, (2009) Estimating selection pressures on alignments of coding sequences. In: Lemey P, Salemi M, Vandamme AM, editors. The Phylogenetic handbook: a practical approach to phylogenetic analysis and hypothesis testing Cambridge University Press Cambridge.
-
(2009)
The Phylogenetic Handbook: A Practical Approach to Phylogenetic Analysis and Hypothesis Testing
-
-
Pond, S.L.K.1
Poon, A.F.Y.2
Frost, S.D.W.3
-
53
-
-
27844569825
-
Site-to-site variation of synonymous substitution rates
-
Pond SK, Muse SV, (2005) Site-to-site variation of synonymous substitution rates. Mol Biol Evol 22: 2375-2385.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2375-2385
-
-
Pond, S.K.1
Muse, S.V.2
-
54
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
55
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
56
-
-
15844406550
-
HyPhy: hypothesis testing using phylogenies
-
Pond SL, Frost SD, Muse SV, (2005) HyPhy: hypothesis testing using phylogenies. Bioinformatics 21: 676-679.
-
(2005)
Bioinformatics
, vol.21
, pp. 676-679
-
-
Pond, S.L.1
Frost, S.D.2
Muse, S.V.3
-
57
-
-
0028024626
-
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome
-
Muse SV, Gaut BS, (1994) A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome. Mol Biol Evol 11: 715-724.
-
(1994)
Mol Biol Evol
, vol.11
, pp. 715-724
-
-
Muse, S.V.1
Gaut, B.S.2
-
59
-
-
13744252890
-
MAFFT version 5: improvement in accuracy of multiple sequence alignment
-
Katoh K, Kuma K, Toh H, Miyata T, (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33: 511-518.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.2
Toh, H.3
Miyata, T.4
-
60
-
-
0004246255
-
-
Pearson Education, Inc
-
Watson JD, Baker TA, Bell SP, Gann A, Levine M, et al. (2008) Molecular biology of the gene Pearson Education, Inc.
-
(2008)
Molecular Biology of the Gene
-
-
Watson, J.D.1
Baker, T.A.2
Bell, S.P.3
Gann, A.4
Levine, M.5
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