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Volumn 8, Issue 5, 2013, Pages 477-485

Large-scale global identification of protein lysine methylation in vivo

Author keywords

Affinity; Histone; Immunoprecipitation; Mass spectrometry; Methylation; Non histone; Proteomics

Indexed keywords

LYSINE; METHYLTRANSFERASE; SHORT HAIRPIN RNA; TRANSCRIPTION FACTOR EZH2; TRYPSIN;

EID: 84877345971     PISSN: 15592294     EISSN: 15592308     Source Type: Journal    
DOI: 10.4161/epi.24547     Document Type: Article
Times cited : (122)

References (50)
  • 1
    • 0036532202 scopus 로고    scopus 로고
    • Histone methylation in transcriptional control
    • PMID:11893494
    • Kouzarides T. Histone methylation in transcriptional control. Curr Opin Genet Dev 2002; 12:198-209; PMID:11893494; http://dx.doi.org/10.1016/S0959-437X(02)00287-3.
    • (2002) Curr Opin Genet Dev , vol.12 , pp. 198-209
    • Kouzarides, T.1
  • 2
    • 0036591878 scopus 로고    scopus 로고
    • The many faces of histone lysine methylation
    • PMID:12067650
    • Lachner M, Jenuwein T. The many faces of histone lysine methylation. Curr Opin Cell Biol 2002; 14:286-98; PMID:12067650; http://dx.doi.org/10.1016/S0955-0674(02)00335-6.
    • (2002) Curr Opin Cell Biol , vol.14 , pp. 286-298
    • Lachner, M.1    Jenuwein, T.2
  • 3
    • 0242348752 scopus 로고    scopus 로고
    • Histone lysine methylation: A signature for chromatin function
    • PMID:14585615
    • Sims RJ 3rd, Nishioka K, Reinberg D. Histone lysine methylation: a signature for chromatin function. Trends Genet 2003; 19:629-39; PMID:14585615; http://dx.doi.org/10.1016/j.tig.2003.09.007.
    • (2003) Trends Genet , vol.19 , pp. 629-639
    • Sims III, R.J.1    Nishioka, K.2    Reinberg, D.3
  • 4
    • 84859893371 scopus 로고    scopus 로고
    • Histone methylation: A dynamic mark in health, disease and inheritance
    • PMID:22473383
    • Greer EL, Shi Y. Histone methylation: a dynamic mark in health, disease and inheritance. Nat Rev Genet 2012; 13:343-57; PMID:22473383; http://dx.doi. org/10.1038/nrg3173.
    • (2012) Nat Rev Genet , vol.13 , pp. 343-357
    • Greer, E.L.1    Shi, Y.2
  • 5
    • 55949136562 scopus 로고    scopus 로고
    • Roles of the EZH2 histone methyltransferase in cancer epigenetics
    • PMID:18723033
    • Simon JA, Lange CA. Roles of the EZH2 histone methyltransferase in cancer epigenetics. Mutat Res 2008; 647:21-9; PMID:18723033; http://dx.doi. org/10.1016/j.mrfmmm.2008.07.010.
    • (2008) Mutat Res , vol.647 , pp. 21-29
    • Simon, J.A.1    Lange, C.A.2
  • 6
    • 79960367903 scopus 로고    scopus 로고
    • Chemogenetic analysis of human protein methyltransferases
    • PMID:21564555
    • Richon VM, Johnston D, Sneeringer CJ, Jin L, Majer CR, Elliston K, et al. Chemogenetic analysis of human protein methyltransferases. Chem Biol Drug Des 2011; 78:199-210; PMID:21564555; http://dx.doi. org/10.1111/j.1747-0285.2011.01135.x.
    • (2011) Chem Biol Drug Des , vol.78 , pp. 199-210
    • Richon, V.M.1    Johnston, D.2    Sneeringer, C.J.3    Jin, L.4    Majer, C.R.5    Elliston, K.6
  • 7
    • 9244247669 scopus 로고    scopus 로고
    • Regulation of p53 activity through lysine methylation
    • PMID:15525938
    • Chuikov S, Kurash JK, Wilson JR, Xiao B, Justin N, Ivanov GS, et al. Regulation of p53 activity through lysine methylation. Nature 2004; 432:353-60; PMID:15525938; http://dx.doi.org/10.1038/nature03117.
    • (2004) Nature , vol.432 , pp. 353-360
    • Chuikov, S.1    Kurash, J.K.2    Wilson, J.R.3    Xiao, B.4    Justin, N.5    Ivanov, G.S.6
  • 8
    • 33845204856 scopus 로고    scopus 로고
    • Repression of p53 activity by Smyd2-mediated methylation
    • PMID:17108971
    • Huang J, Perez-Burgos L, Placek BJ, Sengupta R, Richter M, Dorsey JA, et al. Repression of p53 activity by Smyd2-mediated methylation. Nature 2006; 444:629-32; PMID:17108971; http://dx.doi. org/10.1038/nature05287.
    • (2006) Nature , vol.444 , pp. 629-632
    • Huang, J.1    Perez-Burgos, L.2    Placek, B.J.3    Sengupta, R.4    Richter, M.5    Dorsey, J.A.6
  • 9
    • 0036962410 scopus 로고    scopus 로고
    • Placental growth factor (PlGF) and its receptor Flt-1 (VEGFR-1): Novel therapeutic targets for angiogenic disorders
    • PMID:12543719
    • Luttun A, Tjwa M, Carmeliet P. Placental growth factor (PlGF) and its receptor Flt-1 (VEGFR-1): novel therapeutic targets for angiogenic disorders. Ann N Y Acad Sci 2002; 979:80-93; PMID:12543719; http://dx.doi. org/10.1111/j.1749-6632.2002.tb04870.x.
    • (2002) Ann N Y Acad Sci , vol.979 , pp. 80-93
    • Luttun, A.1    Tjwa, M.2    Carmeliet, P.3
  • 10
    • 1942534675 scopus 로고    scopus 로고
    • Gene-specific modulation of TAF10 function by SET9-mediated methylation
    • PMID:15099517
    • Kouskouti A, Scheer E, Staub A, Tora L, Talianidis I. Gene-specific modulation of TAF10 function by SET9-mediated methylation. Mol Cell 2004; 14:175-82; PMID:15099517; http://dx.doi.org/10.1016/S1097-2765(04)00182-0.
    • (2004) Mol Cell , vol.14 , pp. 175-182
    • Kouskouti, A.1    Scheer, E.2    Staub, A.3    Tora, L.4    Talianidis, I.5
  • 11
    • 38949178369 scopus 로고    scopus 로고
    • Methylation of p53 by Set7/9 mediates p53 acetylation and activity in vivo
    • PMID:18280244
    • Kurash JK, Lei H, Shen Q, Marston WL, Granda BW, Fan H, et al. Methylation of p53 by Set7/9 mediates p53 acetylation and activity in vivo. Mol Cell 2008; 29:392-400; PMID:18280244; http://dx.doi. org/10.1016/j.molcel.2007.12.025.
    • (2008) Mol Cell , vol.29 , pp. 392-400
    • Kurash, J.K.1    Lei, H.2    Shen, Q.3    Marston, W.L.4    Granda, B.W.5    Fan, H.6
  • 12
    • 43749093216 scopus 로고    scopus 로고
    • Protein lysine methyltransferase G9a acts on non-histone targets
    • PMID:18438403
    • Rathert P, Dhayalan A, Murakami M, Zhang X, Tamas R, Jurkowska R, et al. Protein lysine methyltransferase G9a acts on non-histone targets. Nat Chem Biol 2008; 4:344-6; PMID:18438403; http://dx.doi.org/10.1038/nchembio.88.
    • (2008) Nat Chem Biol , vol.4 , pp. 344-346
    • Rathert, P.1    Dhayalan, A.2    Murakami, M.3    Zhang, X.4    Tamas, R.5    Jurkowska, R.6
  • 13
    • 80054815567 scopus 로고    scopus 로고
    • A proteomic approach for the identification of novel lysine methyltransferase substrates
    • PMID:22024134
    • Levy D, Liu CL, Yang Z, Newman AM, Alizadeh AA, Utz PJ, et al. A proteomic approach for the identification of novel lysine methyltransferase substrates. Epigenetics Chromatin 2011; 4:19; PMID:22024134; http://dx.doi.org/10.1186/1756-8935-4-19.
    • (2011) Epigenetics Chromatin , vol.4 , pp. 19
    • Levy, D.1    Liu, C.L.2    Yang, Z.3    Newman, A.M.4    Alizadeh, A.A.5    Utz, P.J.6
  • 14
    • 38649139336 scopus 로고    scopus 로고
    • Largescale identification and evolution indexing of tyrosine phosphorylation sites from murine brain
    • PMID:18034455
    • Ballif BA, Carey GR, Sunyaev SR, Gygi SP. Largescale identification and evolution indexing of tyrosine phosphorylation sites from murine brain. J Proteome Res 2008; 7:311-8; PMID:18034455; http://dx.doi. org/10.1021/pr0701254.
    • (2008) J Proteome Res , vol.7 , pp. 311-318
    • Ballif, B.A.1    Carey, G.R.2    Sunyaev, S.R.3    Gygi, S.P.4
  • 15
    • 68949212379 scopus 로고    scopus 로고
    • Lysine acetylation targets protein complexes and co-regulates major cellular functions
    • PMID:19608861
    • Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, et al. Lysine acetylation targets protein complexes and co-regulates major cellular functions. Science 2009; 325:834-40; PMID:19608861; http://dx.doi.org/10.1126/science.1175371.
    • (2009) Science , vol.325 , pp. 834-840
    • Choudhary, C.1    Kumar, C.2    Gnad, F.3    Nielsen, M.L.4    Rehman, M.5    Walther, T.C.6
  • 16
    • 82455179484 scopus 로고    scopus 로고
    • Systematic and quantitative assessment of the ubiquitin-modified proteome
    • PMID:21906983
    • Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, et al. Systematic and quantitative assessment of the ubiquitin-modified proteome. Mol Cell 2011; 44:325-40; PMID:21906983; http://dx.doi. org/10.1016/j.molcel.2011.08.025.
    • (2011) Mol Cell , vol.44 , pp. 325-340
    • Kim, W.1    Bennett, E.J.2    Huttlin, E.L.3    Guo, A.4    Li, J.5    Possemato, A.6
  • 17
    • 33746992118 scopus 로고    scopus 로고
    • Substrate and functional diversity of lysine acetylation revealed by a proteomics survey
    • PMID:16916647
    • Kim SC, Sprung R, Chen Y, Xu Y, Ball H, Pei J, et al. Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. Mol Cell 2006; 23:607-18; PMID:16916647; http://dx.doi. org/10.1016/j.molcel.2006.06.026.
    • (2006) Mol Cell , vol.23 , pp. 607-618
    • Kim, S.C.1    Sprung, R.2    Chen, Y.3    Xu, Y.4    Ball, H.5    Pei, J.6
  • 18
    • 47249157351 scopus 로고    scopus 로고
    • Combinatorial modification of human histone H4 quantitated by two-dimensional liquid chromatography coupled with top down mass spectrometry
    • PMID:18381279
    • Pesavento JJ, Bullock CR, LeDuc RD, Mizzen CA, Kelleher NL. Combinatorial modification of human histone H4 quantitated by two-dimensional liquid chromatography coupled with top down mass spectrometry. J Biol Chem 2008; 283:14927-37; PMID:18381279; http://dx.doi.org/10.1074/jbc. M709796200.
    • (2008) J Biol Chem , vol.283 , pp. 14927-14937
    • Pesavento, J.J.1    Bullock, C.R.2    LeDuc, R.D.3    Mizzen, C.A.4    Kelleher, N.L.5
  • 19
    • 37548998570 scopus 로고    scopus 로고
    • Automethylation of G9a and its implication in wider substrate specificity and HP1 binding
    • PMID:17962312
    • Chin HG, Estève PO, Pradhan M, Benner J, Patnaik D, Carey MF, et al. Automethylation of G9a and its implication in wider substrate specificity and HP1 binding. Nucleic Acids Res 2007; 35:7313-23; PMID:17962312; http://dx.doi.org/10.1093/nar/gkm726.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7313-7323
    • Chin, H.G.1    Estève, P.O.2    Pradhan, M.3    Benner, J.4    Patnaik, D.5    Carey, M.F.6
  • 20
    • 11144241618 scopus 로고    scopus 로고
    • Substrate specificity and kinetic mechanism of mammalian G9a histone H3 methyltransferase
    • PMID:15485804
    • Patnaik D, Chin HG, Estève PO, Benner J, Jacobsen SE, Pradhan S. Substrate specificity and kinetic mechanism of mammalian G9a histone H3 methyltransferase. J Biol Chem 2004; 279:53248-58; PMID:15485804; http://dx.doi.org/10.1074/jbc.M409604200.
    • (2004) J Biol Chem , vol.279 , pp. 53248-53258
    • Patnaik, D.1    Chin, H.G.2    Estève, P.O.3    Benner, J.4    Jacobsen, S.E.5    Pradhan, S.6
  • 21
    • 14044256546 scopus 로고    scopus 로고
    • In vitro and in vivo analyses of a Phe/Tyr switch controlling product specificity of histone lysine methyltransferases
    • PMID:15590646
    • Collins RE, Tachibana M, Tamaru H, Smith KM, Jia D, Zhang X, et al. In vitro and in vivo analyses of a Phe/Tyr switch controlling product specificity of histone lysine methyltransferases. J Biol Chem 2005; 280:5563-70; PMID:15590646; http://dx.doi. org/10.1074/jbc.M410483200.
    • (2005) J Biol Chem , vol.280 , pp. 5563-5570
    • Collins, R.E.1    Tachibana, M.2    Tamaru, H.3    Smith, K.M.4    Jia, D.5    Zhang, X.6
  • 22
    • 48849107682 scopus 로고    scopus 로고
    • Identifying and quantifying sites of protein methylation by heavy methyl SILAC
    • Chapter 14:Unit 14 9
    • Ong SE, Mann M. Identifying and quantifying sites of protein methylation by heavy methyl SILAC. Curr Protoc Protein Sci 2006; Chapter 14:Unit 14 9.
    • (2006) Curr Protoc Protein Sci
    • Ong, S.E.1    Mann, M.2
  • 24
    • 33746298724 scopus 로고    scopus 로고
    • Quantitative proteomic analysis of post-translational modifications of human histones
    • PMID:16627869
    • Beck HC, Nielsen EC, Matthiesen R, Jensen LH, Sehested M, Finn P, et al. Quantitative proteomic analysis of post-translational modifications of human histones. Mol Cell Proteomics 2006; 5:1314-25; PMID:16627869; http://dx.doi.org/10.1074/mcp. M600007-MCP200.
    • (2006) Mol Cell Proteomics , vol.5 , pp. 1314-1325
    • Beck, H.C.1    Nielsen, E.C.2    Matthiesen, R.3    Jensen, L.H.4    Sehested, M.5    Finn, P.6
  • 25
    • 84856290619 scopus 로고    scopus 로고
    • Smyd2 controls cytoplasmic lysine methylation of Hsp90 and myofilament organization
    • PMID:22241783
    • Donlin LT, Andresen C, Just S, Rudensky E, Pappas CT, Kruger M, et al. Smyd2 controls cytoplasmic lysine methylation of Hsp90 and myofilament organization. Genes Dev 2012; 26:114-9; PMID:22241783; http://dx.doi.org/10.1101/gad.177758.111.
    • (2012) Genes Dev , vol.26 , pp. 114-119
    • Donlin, L.T.1    Andresen, C.2    Just, S.3    Rudensky, E.4    Pappas, C.T.5    Kruger, M.6
  • 26
    • 84860833500 scopus 로고    scopus 로고
    • Reorganizing the protein space at the Universal Protein Resource (UniProt)
    • UniProt Consortium, PMID:22102590
    • UniProt Consortium. Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res 2012; 40(Database issue):D71-5; PMID:22102590; http://dx.doi.org/10.1093/nar/gkr981.
    • (2012) Nucleic Acids Res , vol.40 , Issue.DATABASE ISSUE
  • 27
    • 0032522219 scopus 로고    scopus 로고
    • The elongation factor 1 A-2 isoform from rabbit: Cloning of the cDNA and characterization of the protein
    • PMID:9518480
    • Kahns S, Lund A, Kristensen P, Knudsen CR, Clark BF, Cavallius J, et al. The elongation factor 1 A-2 isoform from rabbit: cloning of the cDNA and characterization of the protein. Nucleic Acids Res 1998; 26:1884-90; PMID:9518480; http://dx.doi.org/10.1093/nar/26.8.1884.
    • (1998) Nucleic Acids Res , vol.26 , pp. 1884-1890
    • Kahns, S.1    Lund, A.2    Kristensen, P.3    Knudsen, C.R.4    Clark, B.F.5    Cavallius, J.6
  • 28
    • 77649090565 scopus 로고    scopus 로고
    • Identification of arginine-and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications
    • PMID:20137074
    • Pang CN, Gasteiger E, Wilkins MR. Identification of arginine-and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications. BMC Genomics 2010; 11:92; PMID:20137074; http://dx.doi.org/10.1186/1471-2164-11-92.
    • (2010) BMC Genomics , vol.11 , pp. 92
    • Pang, C.N.1    Gasteiger, E.2    Wilkins, M.R.3
  • 29
    • 2942595014 scopus 로고    scopus 로고
    • A proteomic analysis of arginine-methylated protein complexes
    • PMID:14534352
    • Boisvert FM, Côté J, Boulanger MC, Richard S. A proteomic analysis of arginine-methylated protein complexes. Mol Cell Proteomics 2003; 2:1319-30; PMID:14534352; http://dx.doi.org/10.1074/mcp. M300088-MCP200.
    • (2003) Mol Cell Proteomics , vol.2 , pp. 1319-1330
    • Boisvert, F.M.1    Côté, J.2    Boulanger, M.C.3    Richard, S.4
  • 30
    • 84864213113 scopus 로고    scopus 로고
    • Systematic functional prioritization of protein posttranslational modifications
    • PMID:22817900
    • Beltrao P, Albanèse V, Kenner LR, Swaney DL, Burlingame A, Villén J, et al. Systematic functional prioritization of protein posttranslational modifications. Cell 2012; 150:413-25; PMID:22817900; http://dx.doi.org/10.1016/j.cell.2012.05.036.
    • (2012) Cell , vol.150 , pp. 413-425
    • Beltrao, P.1    Albanèse, V.2    Kenner, L.R.3    Swaney, D.L.4    Burlingame, A.5    Villén, J.6
  • 31
    • 0032427628 scopus 로고    scopus 로고
    • The role of ATM in DNA damage responses and cancer
    • PMID:9916992
    • Canman CE, Lim DS. The role of ATM in DNA damage responses and cancer. Oncogene 1998; 17:3301-8; PMID:9916992; http://dx.doi.org/10.1038/sj.onc.1202577.
    • (1998) Oncogene , vol.17 , pp. 3301-3308
    • Canman, C.E.1    Lim, D.S.2
  • 33
    • 34249947699 scopus 로고    scopus 로고
    • ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage
    • PMID:17525332
    • Matsuoka S, Ballif BA, Smogorzewska A, McDonald ER 3rd, Hurov KE, Luo J, et al. ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage. Science 2007; 316:1160-6; PMID:17525332; http://dx.doi.org/10.1126/science. 1140321.
    • (2007) Science , vol.316 , pp. 1160-1166
    • Matsuoka, S.1    Ballif, B.A.2    Smogorzewska, A.3    McDonald III, E.R.4    Hurov, K.E.5    Luo, J.6
  • 34
    • 37549028411 scopus 로고    scopus 로고
    • DNA damageinduced acetylation of lysine 3016 of ATM activates ATM kinase activity
    • PMID:17923702
    • Sun Y, Xu Y, Roy K, Price BD. DNA damageinduced acetylation of lysine 3016 of ATM activates ATM kinase activity. Mol Cell Biol 2007; 27:8502-9; PMID:17923702; http://dx.doi.org/10.1128/MCB.01382-07.
    • (2007) Mol Cell Biol , vol.27 , pp. 8502-8509
    • Sun, Y.1    Xu, Y.2    Roy, K.3    Price, B.D.4
  • 35
    • 33750456519 scopus 로고    scopus 로고
    • Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
    • PMID:17081983
    • Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, et al. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 2006; 127:635-48; PMID:17081983; http://dx.doi. org/10.1016/j.cell.2006.09.026.
    • (2006) Cell , vol.127 , pp. 635-648
    • Olsen, J.V.1    Blagoev, B.2    Gnad, F.3    Macek, B.4    Kumar, C.5    Mortensen, P.6
  • 37
    • 70350462371 scopus 로고    scopus 로고
    • Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions
    • PMID:19690332
    • Mayya V, Lundgren DH, Hwang SI, Rezaul K, Wu L, Eng JK, et al. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. Sci Signal 2009; 2:ra46; PMID:19690332; http://dx.doi.org/10.1126/scisignal.2000007.
    • (2009) Sci Signal , vol.2
    • Mayya, V.1    Lundgren, D.H.2    Hwang, S.I.3    Rezaul, K.4    Wu, L.5    Eng, J.K.6
  • 38
    • 84863579070 scopus 로고    scopus 로고
    • Histone lysine methyltransferase SETD8 promotes carcinogenesis by deregulating PCNA expression
    • PMID:22556262
    • Takawa M, Cho HS, Hayami S, Toyokawa G, Kogure M, Yamane Y, et al. Histone lysine methyltransferase SETD8 promotes carcinogenesis by deregulating PCNA expression. Cancer Res 2012; 72:3217-27; PMID:22556262; http://dx.doi.org/10.1158/0008-5472.CAN-11-3701.
    • (2012) Cancer Res , vol.72 , pp. 3217-3227
    • Takawa, M.1    Cho, H.S.2    Hayami, S.3    Toyokawa, G.4    Kogure, M.5    Yamane, Y.6
  • 39
    • 67650102336 scopus 로고    scopus 로고
    • Overexpression of SMYD2 relates to tumor cell proliferation and malignant outcome of esophageal squamous cell carcinoma
    • PMID:19423649
    • Komatsu S, Imoto I, Tsuda H, Kozaki KI, Muramatsu T, Shimada Y, et al. Overexpression of SMYD2 relates to tumor cell proliferation and malignant outcome of esophageal squamous cell carcinoma. Carcinogenesis 2009; 30:1139-46; PMID:19423649; http://dx.doi. org/10.1093/carcin/bgp116.
    • (2009) Carcinogenesis , vol.30 , pp. 1139-1146
    • Komatsu, S.1    Imoto, I.2    Tsuda, H.3    Kozaki, K.I.4    Muramatsu, T.5    Shimada, Y.6
  • 40
    • 77449086407 scopus 로고    scopus 로고
    • In vivo residue-specific histone methylation dynamics
    • PMID:19940157
    • Zee BM, Levin RS, Xu B, LeRoy G, Wingreen NS, Garcia BA. In vivo residue-specific histone methylation dynamics. J Biol Chem 2010; 285:3341-50; PMID:19940157; http://dx.doi.org/10.1074/jbc. M109.063784.
    • (2010) J Biol Chem , vol.285 , pp. 3341-3350
    • Zee, B.M.1    Levin, R.S.2    Xu, B.3    LeRoy, G.4    Wingreen, N.S.5    Garcia, B.A.6
  • 41
    • 0037039159 scopus 로고    scopus 로고
    • Directed proteomic analysis of the human nucleolus
    • PMID:11790298
    • Andersen JS, Lyon CE, Fox AH, Leung AK, Lam YW, Steen H, et al. Directed proteomic analysis of the human nucleolus. Curr Biol 2002; 12:1-11; PMID:11790298; http://dx.doi.org/10.1016/S0960-9822(01)00650-9.
    • (2002) Curr Biol , vol.12 , pp. 1-11
    • Andersen, J.S.1    Lyon, C.E.2    Fox, A.H.3    Leung, A.K.4    Lam, Y.W.5    Steen, H.6
  • 42
    • 34547809957 scopus 로고    scopus 로고
    • Modulation of p53 function by SET8-mediated methylation at lysine 382
    • PMID:17707234
    • Shi X, Kachirskaia I, Yamaguchi H, West LE, Wen H, Wang EW, et al. Modulation of p53 function by SET8-mediated methylation at lysine 382. Mol Cell 2007; 27:636-46; PMID:17707234; http://dx.doi. org/10.1016/j.molcel.2007.07.012.
    • (2007) Mol Cell , vol.27 , pp. 636-646
    • Shi, X.1    Kachirskaia, I.2    Yamaguchi, H.3    West, L.E.4    Wen, H.5    Wang, E.W.6
  • 43
    • 21144458164 scopus 로고    scopus 로고
    • Immunoaffinity profiling of tyrosine phosphorylation in cancer cells
    • PMID:15592455
    • Rush J, Moritz A, Lee KA, Guo A, Goss VL, Spek EJ, et al. Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. Nat Biotechnol 2005; 23:94-101; PMID:15592455; http://dx.doi.org/10.1038/nbt1046.
    • (2005) Nat Biotechnol , vol.23 , pp. 94-101
    • Rush, J.1    Moritz, A.2    Lee, K.A.3    Guo, A.4    Goss, V.L.5    Spek, E.J.6
  • 44
    • 0037317228 scopus 로고    scopus 로고
    • Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics
    • PMID:12585499
    • Rappsilber J, Ishihama Y, Mann M. Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Anal Chem 2003; 75:663-70; PMID:12585499; http://dx.doi.org/10.1021/ac026117i.
    • (2003) Anal Chem , vol.75 , pp. 663-670
    • Rappsilber, J.1    Ishihama, Y.2    Mann, M.3
  • 45
    • 21444449702 scopus 로고    scopus 로고
    • pFind: A novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry
    • PMID:15817687
    • Li D, Fu Y, Sun R, Ling CX, Wei Y, Zhou H, et al. pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry. Bioinformatics 2005; 21:3049-50; PMID:15817687; http://dx.doi. org/10.1093/bioinformatics/bti439.
    • (2005) Bioinformatics , vol.21 , pp. 3049-3050
    • Li, D.1    Fu, Y.2    Sun, R.3    Ling, C.X.4    Wei, Y.5    Zhou, H.6
  • 46
    • 3042818018 scopus 로고    scopus 로고
    • The International Protein Index: An integrated database for proteomics experiments
    • PMID:15221759
    • Kersey PJ, Duarte J, Williams A, Karavidopoulou Y, Birney E, Apweiler R. The International Protein Index: an integrated database for proteomics experiments. Proteomics 2004; 4:1985-8; PMID:15221759; http://dx.doi.org/10.1002/pmic.200300721.
    • (2004) Proteomics , vol.4 , pp. 1985-1988
    • Kersey, P.J.1    Duarte, J.2    Williams, A.3    Karavidopoulou, Y.4    Birney, E.5    Apweiler, R.6
  • 47
    • 24044513966 scopus 로고    scopus 로고
    • Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
    • PMID:16118637
    • Elias JE, Haas W, Faherty BK, Gygi SP. Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations. Nat Methods 2005; 2:667-75; PMID:16118637; http://dx.doi. org/10.1038/nmeth785.
    • (2005) Nat Methods , vol.2 , pp. 667-675
    • Elias, J.E.1    Haas, W.2    Faherty, B.K.3    Gygi, S.P.4
  • 48
    • 0030624540 scopus 로고    scopus 로고
    • Better prediction of protein cellular localization sites with the k nearest neighbors classifier
    • PMID:9322029
    • Horton P, Nakai K. Better prediction of protein cellular localization sites with the k nearest neighbors classifier. Proc Int Conf Intell Syst Mol Biol 1997; 5:147-52; PMID:9322029.
    • (1997) Proc Int Conf Intell Syst Mol Biol , vol.5 , pp. 147-152
    • Horton, P.1    Nakai, K.2
  • 49
    • 17844392864 scopus 로고    scopus 로고
    • Combining prediction of secondary structure and solvent accessibility in proteins
    • PMID:15768403
    • Adamczak R, Porollo A, Meller J. Combining prediction of secondary structure and solvent accessibility in proteins. Proteins 2005; 59:467-75; PMID:15768403; http://dx.doi.org/10.1002/prot.20441.
    • (2005) Proteins , vol.59 , pp. 467-475
    • Adamczak, R.1    Porollo, A.2    Meller, J.3
  • 50
    • 24044440971 scopus 로고    scopus 로고
    • BiNGO: A Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
    • PMID:15972284
    • Maere S, Heymans K, Kuiper M. BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics 2005; 21:3448-9; PMID:15972284; http://dx.doi. org/10.1093/bioinformatics/bti551.
    • (2005) Bioinformatics , vol.21 , pp. 3448-3449
    • Maere, S.1    Heymans, K.2    Kuiper, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.