-
1
-
-
0034923502
-
DNA topoisomerases: Structure, function, and mechanism
-
Champoux, J.J. (2001) DNA topoisomerases: structure, function, and mechanism. Annu. Rev. Biochem., 70, 369-413.
-
(2001)
Annu. Rev. Biochem.
, vol.70
, pp. 369-413
-
-
Champoux, J.J.1
-
2
-
-
78650670562
-
Apurinic/apyrimidinic (AP) site recognition by the 5-dRP/AP lyase in poly(ADP-ribose) polymerase-1 (PARP-1)
-
Khodyreva, S.N., Prasad, R., Ilina, E.S., Sukhanova, M.V., Kutuzov, M.M., Liu, Y., Hou, E.W., Wilson, S.H. and Lavrik, O.I. (2010) Apurinic/apyrimidinic (AP) site recognition by the 5-dRP/AP lyase in poly(ADP-ribose) polymerase-1 (PARP-1). Proc. Natl Acad. Sci. USA, 107, 22090-22095.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 22090-22095
-
-
Khodyreva, S.N.1
Prasad, R.2
Ilina, E.S.3
Sukhanova, M.V.4
Kutuzov, M.M.5
Liu, Y.6
Hou, E.W.7
Wilson, S.H.8
Lavrik, O.I.9
-
3
-
-
77951621112
-
Ku is a 5-dRP/AP lyase that excises nucleotide damage near broken ends
-
Roberts, S.A., Strande, N., Burkhalter, M.D., Strom, C., Havener, J.M., Hasty, P. and Ramsden, D.A. (2010) Ku is a 5-dRP/AP lyase that excises nucleotide damage near broken ends. Nature, 464, 1214-1217.
-
(2010)
Nature
, vol.464
, pp. 1214-1217
-
-
Roberts, S.A.1
Strande, N.2
Burkhalter, M.D.3
Strom, C.4
Havener, J.M.5
Hasty, P.6
Ramsden, D.A.7
-
4
-
-
7444266619
-
Human DNA glycosylases involved in the repair of oxidatively damaged DNA
-
Ide, H. and Kotera, M. (2004) Human DNA glycosylases involved in the repair of oxidatively damaged DNA. Biol. Pharm. Bull., 27, 480-485.
-
(2004)
Biol. Pharm. Bull.
, vol.27
, pp. 480-485
-
-
Ide, H.1
Kotera, M.2
-
5
-
-
33847613569
-
Oxidative DNA damage repair in mammalian cells: A new perspective
-
Hazra, T.K., Das, A., Das, S., Choudhury, S., Kow, Y.W. and Roy, R. (2007) Oxidative DNA damage repair in mammalian cells: a new perspective. DNA Repair, 6, 470-480.
-
(2007)
DNA Repair
, vol.6
, pp. 470-480
-
-
Hazra, T.K.1
Das, A.2
Das, S.3
Choudhury, S.4
Kow, Y.W.5
Roy, R.6
-
6
-
-
34447323281
-
DNA binding, nucleotide flipping, and the helix-turn-helix motif in base repair by O6-alkylguanine-DNA alkyltransferase and its implications for cancer chemotherapy
-
Tubbs, J.L., Pegg, A.E. and Tainer, J.A. (2007) DNA binding, nucleotide flipping, and the helix-turn-helix motif in base repair by O6-alkylguanine-DNA alkyltransferase and its implications for cancer chemotherapy. DNA Repair, 6, 1100-1115.
-
(2007)
DNA Repair
, vol.6
, pp. 1100-1115
-
-
Tubbs, J.L.1
Pegg, A.E.2
Tainer, J.A.3
-
7
-
-
27744521320
-
Human Tdp1 cleaves a broad spectrum of substrates, including phosphoamide linkages
-
Interthal, H., Chen, H.J. and Champoux, J.J. (2005) Human Tdp1 cleaves a broad spectrum of substrates, including phosphoamide linkages. J. Biol. Chem., 280, 36518-36528.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 36518-36528
-
-
Interthal, H.1
Chen, H.J.2
Champoux, J.J.3
-
8
-
-
42149157403
-
Inhibitors of DNA polymerase beta: Activity and mechanism
-
Gao, Z., Maloney, D.J., Dedkova, L.M. and Hecht, S.M. (2008) Inhibitors of DNA polymerase beta: activity and mechanism. Bioorg. Med. Chem., 16, 4331-4340.
-
(2008)
Bioorg. Med. Chem.
, vol.16
, pp. 4331-4340
-
-
Gao, Z.1
Maloney, D.J.2
Dedkova, L.M.3
Hecht, S.M.4
-
9
-
-
0344011559
-
A mechanism for the exclusion of low-fidelity human Y-family DNA polymerases from base excision repair
-
Haracska, L., Prakash, L. and Prakash, S. (2003) A mechanism for the exclusion of low-fidelity human Y-family DNA polymerases from base excision repair. Genes Dev., 17, 2777-2785.
-
(2003)
Genes Dev.
, vol.17
, pp. 2777-2785
-
-
Haracska, L.1
Prakash, L.2
Prakash, S.3
-
10
-
-
84867395940
-
DNA methylation inhibitors in cancer: Recent and future approaches
-
Gros, C., Fahy, J., Halby, L., Dufau, I., Erdmann, A., Gregoire, J.M., Ausseil, F., Vispe, S. and Arimondo, P.B. (2012) DNA methylation inhibitors in cancer: recent and future approaches. Biochimie, 94, 2280-2296.
-
(2012)
Biochimie
, vol.94
, pp. 2280-2296
-
-
Gros, C.1
Fahy, J.2
Halby, L.3
Dufau, I.4
Erdmann, A.5
Gregoire, J.M.6
Ausseil, F.7
Vispe, S.8
Arimondo, P.B.9
-
11
-
-
79956189605
-
Repair and biochemical effects of DNA-protein crosslinks
-
Ide, H., Shoulkamy, M.I., Nakano, T., Miyamoto-Matsubara, M. and Salem, A.M. (2011) Repair and biochemical effects of DNA-protein crosslinks. Mutat. Res., 711, 113-122.
-
(2011)
Mutat. Res.
, vol.711
, pp. 113-122
-
-
Ide, H.1
Shoulkamy, M.I.2
Nakano, T.3
Miyamoto-Matsubara, M.4
Salem, A.M.5
-
12
-
-
84865391025
-
Topoisomerase assays
-
Chapter 3, Unit 3.3
-
Nitiss, J.L., Soans, E., Rogojina, A., Seth, A. and Mishina, M. (2012) Topoisomerase assays. Curr. Protoc. Pharmacol., Chapter 3, Unit 3.3.
-
(2012)
Curr. Protoc. Pharmacol
-
-
Nitiss, J.L.1
Soans, E.2
Rogojina, A.3
Seth, A.4
Mishina, M.5
-
13
-
-
0035219768
-
ICE bioassay. Isolating in vivo complexes of enzyme to DNA
-
Subramanian, D., Furbee, C.S. and Muller, M.T. (2001) ICE bioassay. Isolating in vivo complexes of enzyme to DNA. Methods Mol. Biol., 95, 137-147.
-
(2001)
Methods Mol. Biol.
, vol.95
, pp. 137-147
-
-
Subramanian, D.1
Furbee, C.S.2
Muller, M.T.3
-
14
-
-
0031847082
-
Etoposide targets topoisomerase IIalpha and IIbeta in leukemic cells: Isoform-specific cleavable complexes visualized and quantified in situ by a novel immunofluorescence technique
-
Willmore, E., Frank, A.J., Padget, K., Tilby, M.J. and Austin, C.A. (1998) Etoposide targets topoisomerase IIalpha and IIbeta in leukemic cells: isoform-specific cleavable complexes visualized and quantified in situ by a novel immunofluorescence technique. Mol. Pharmacol., 54, 78-85.
-
(1998)
Mol. Pharmacol.
, vol.54
, pp. 78-85
-
-
Willmore, E.1
Frank, A.J.2
Padget, K.3
Tilby, M.J.4
Austin, C.A.5
-
15
-
-
23944471409
-
A method for the isolation of covalent DNA-protein crosslinks suitable for proteomics analysis
-
Barker, S., Murray, D., Zheng, J., Li, L. and Weinfeld, M. (2005) A method for the isolation of covalent DNA-protein crosslinks suitable for proteomics analysis. Anal. Biochem., 344, 204-215.
-
(2005)
Anal. Biochem.
, vol.344
, pp. 204-215
-
-
Barker, S.1
Murray, D.2
Zheng, J.3
Li, L.4
Weinfeld, M.5
-
16
-
-
84867585130
-
Detection of DNA-protein crosslinks (DPCs) by novel direct fluorescence labeling methods: Distinct stabilities of aldehyde and radiation-induced DPCs
-
Shoulkamy, M.I., Nakano, T., Ohshima, M., Hirayama, R., Uzawa, A., Furusawa, Y. and Ide, H. (2012) Detection of DNA-protein crosslinks (DPCs) by novel direct fluorescence labeling methods: distinct stabilities of aldehyde and radiation-induced DPCs. Nucleic Acids Res., 40, e143.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Shoulkamy, M.I.1
Nakano, T.2
Ohshima, M.3
Hirayama, R.4
Uzawa, A.5
Furusawa, Y.6
Ide, H.7
-
17
-
-
0027169767
-
A reagent for the single-step simultaneous isolation of RNA, DNA and proteins from cell and tissue samples
-
536-537
-
Chomczynski, P. (1993) A reagent for the single-step simultaneous isolation of RNA, DNA and proteins from cell and tissue samples. Biotechniques, 15, 532-534, 536-537.
-
(1993)
Biotechniques
, vol.15
, pp. 532-534
-
-
Chomczynski, P.1
-
18
-
-
0030615083
-
DNAzol: A reagent for the rapid isolation of genomic DNA
-
Chomczynski, P., Mackey, K., Drews, R. and Wilfinger, W. (1997) DNAzol: a reagent for the rapid isolation of genomic DNA. Biotechniques, 22, 550-553.
-
(1997)
Biotechniques
, vol.22
, pp. 550-553
-
-
Chomczynski, P.1
MacKey, K.2
Drews, R.3
Wilfinger, W.4
-
19
-
-
26644437215
-
Identification of mammalian proteins cross-linked to DNA by ionizing radiation
-
Barker, S., Weinfeld, M., Zheng, J., Li, L. and Murray, D. (2005) Identification of mammalian proteins cross-linked to DNA by ionizing radiation. J. Biol. Chem., 280, 33826-33838.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 33826-33838
-
-
Barker, S.1
Weinfeld, M.2
Zheng, J.3
Li, L.4
Murray, D.5
-
20
-
-
0242333835
-
Normalization of cDNA microarray data
-
Smyth, G.K. and Speed, T. (2003) Normalization of cDNA microarray data. Methods, 31, 265-273.
-
(2003)
Methods
, vol.31
, pp. 265-273
-
-
Smyth, G.K.1
Speed, T.2
-
21
-
-
0037378557
-
Transcription-dependent degradation of topoisomerase I-DNA covalent complexes
-
Desai, S.D., Zhang, H., Rodriguez-Bauman, A., Yang, J.M., Wu, X., Gounder, M.K., Rubin, E.H. and Liu, L.F. (2003) Transcription-dependent degradation of topoisomerase I-DNA covalent complexes. Mol. Cell. Biol., 23, 2341-2350.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 2341-2350
-
-
Desai, S.D.1
Zhang, H.2
Rodriguez-Bauman, A.3
Yang, J.M.4
Wu, X.5
Gounder, M.K.6
Rubin, E.H.7
Liu, L.F.8
-
22
-
-
47949130625
-
Topoisomerase levels determine chemotherapy response in vitro and in vivo
-
Burgess, D.J., Doles, J., Zender, L., Xue, W., Ma, B., McCombie, W.R., Hannon, G.J., Lowe, S.W. and Hemann, M.T. (2008) Topoisomerase levels determine chemotherapy response in vitro and in vivo. Proc. Natl Acad. Sci. USA, 105, 9053-9058.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 9053-9058
-
-
Burgess, D.J.1
Doles, J.2
Zender, L.3
Xue, W.4
Ma, B.5
McCombie, W.R.6
Hannon, G.J.7
Lowe, S.W.8
Hemann, M.T.9
-
23
-
-
84859169877
-
The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
-
Barretina, J., Caponigro, G., Stransky, N., Venkatesan, K., Margolin, A.A., Kim, S., Wilson, C.J., Lehar, J., Kryukov, G.V., Sonkin, D. et al. (2012) The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity. Nature, 483, 603-607.
-
(2012)
Nature
, vol.483
, pp. 603-607
-
-
Barretina, J.1
Caponigro, G.2
Stransky, N.3
Venkatesan, K.4
Margolin, A.A.5
Kim, S.6
Wilson, C.J.7
Lehar, J.8
Kryukov, G.V.9
Sonkin, D.10
-
24
-
-
84868377002
-
Codon-usage-based inhibition of HIV protein synthesis by human schlafen 11
-
Li, M., Kao, E., Gao, X., Sandig, H., Limmer, K., Pavon-Eternod, M., Jones, T.E., Landry, S., Pan, T., Weitzman, M.D. et al. (2012) Codon-usage-based inhibition of HIV protein synthesis by human schlafen 11. Nature, 491, 125-128.
-
(2012)
Nature
, vol.491
, pp. 125-128
-
-
Li, M.1
Kao, E.2
Gao, X.3
Sandig, H.4
Limmer, K.5
Pavon-Eternod, M.6
Jones, T.E.7
Landry, S.8
Pan, T.9
Weitzman, M.D.10
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