메뉴 건너뛰기




Volumn 194, Issue 1, 2013, Pages 117-131

The nuclear Argonaute NRDE-3 contributes to transitive RNAi in Caenorhabditis elegans

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEAR RNA INTERFERENCE DEFECTIVE PROTEIN 3; PEPTIDES AND PROTEINS; SMALL INTERFERING RNA; UNCLASSIFIED DRUG;

EID: 84877087371     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.113.149765     Document Type: Article
Times cited : (17)

References (44)
  • 1
    • 0037273564 scopus 로고    scopus 로고
    • Gene silencing in Caenorhabditis elegans by transitive RNA interference
    • Alder, M. N., S. Dames, J. Gaudet, and S. E. Mango, 2003 Gene silencing in Caenorhabditis elegans by transitive RNA interference. RNA 9: 25-32.
    • (2003) RNA , vol.9 , pp. 25-32
    • Alder, M.N.1    Dames, S.2    Gaudet, J.3    Mango, S.E.4
  • 2
    • 35348907995 scopus 로고    scopus 로고
    • Whole genome microarray analysis of C. elegans rrf-3 and eri-1 mutants
    • Asikainen, S., M. Storvik, M. Lakso, and G. Wong, 2007 Whole genome microarray analysis of C. elegans rrf-3 and eri-1 mutants. FEBS Lett. 581: 5050-5054.
    • (2007) FEBS Lett , vol.581 , pp. 5050-5054
    • Asikainen, S.1    Storvik, M.2    Lakso, M.3    Wong, G.4
  • 3
    • 0032755747 scopus 로고    scopus 로고
    • RNA interference can target pre-mRNA: Consequences for gene expression in a Caenorhabditis elegans operon
    • Bosher, J. M., P. Dufourcq, S. Sookhareea, and M. Labouesse, 1999 RNA interference can target pre-mRNA: consequences for gene expression in a Caenorhabditis elegans operon. Genetics 153: 1245-1256.
    • (1999) Genetics , vol.153 , pp. 1245-1256
    • Bosher, J.M.1    Dufourcq, P.2    Sookhareea, S.3    Labouesse, M.4
  • 4
    • 0016063911 scopus 로고
    • The genetics of Caenorhabditis elegans
    • Brenner, S., 1974 The genetics of Caenorhabditis elegans. Genetics 77: 71-94.
    • (1974) Genetics , vol.77 , pp. 71-94
    • Brenner, S.1
  • 5
    • 84866516239 scopus 로고    scopus 로고
    • A nuclear Argonaute promotes multigenerational epigenetic inheritance and germline immortality
    • Buckley, B. A., K. B. Burkhart, S. G. Gu, G. Spracklin, A. Kershner et al., 2012 A nuclear Argonaute promotes multigenerational epigenetic inheritance and germline immortality. Nature 489: 447-451.
    • (2012) Nature , vol.489 , pp. 447-451
    • Buckley, B.A.1    Burkhart, K.B.2    Gu, S.G.3    Spracklin, G.4    Kershner, A.5
  • 6
    • 80052328708 scopus 로고    scopus 로고
    • A pre-mRNA-associating factor links endogenous siRNAs to chromatin regulation
    • Burkhart, K. B., S. Guang, B. A. Buckley, L. Wong, A. F. Bochner et al., 2011 A pre-mRNA-associating factor links endogenous siRNAs to chromatin regulation. PLoS Genet. 7: e1002249.
    • (2011) PLoS Genet , vol.7
    • Burkhart, K.B.1    Guang, S.2    Buckley, B.A.3    Wong, L.4    Bochner, A.F.5
  • 7
    • 83755183247 scopus 로고    scopus 로고
    • Nuclear RNAi maintains heritable gene silencing in Caenorhabditis elegans
    • Burton, N. O., K. B. Burkhart, and S. Kennedy, 2011 Nuclear RNAi maintains heritable gene silencing in Caenorhabditis elegans. Proc. Natl. Acad. Sci. USA 108: 19683-19688.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 19683-19688
    • Burton, N.O.1    Burkhart, K.B.2    Kennedy, S.3
  • 8
    • 0022037864 scopus 로고
    • Genetic mapping of Caenorhabditis elegans collagen genes using dna polymorphisms as phenotypic markers
    • Cox, G. N., S. Carr, J. M. Kramer, and D. Hirsh, 1985 Genetic mapping of Caenorhabditis elegans collagen genes using dna polymorphisms as phenotypic markers. Genetics 109: 513-528.
    • (1985) Genetics , vol.109 , pp. 513-528
    • Cox, G.N.1    Carr, S.2    Kramer, J.M.3    Hirsh, D.4
  • 9
    • 31044452870 scopus 로고    scopus 로고
    • Functional proteomics reveals the biochemical niche of C. elegans DCR-1 in multiple small-RNA-mediated pathways
    • Duchaine, T. F., J. A. Wohlschlegel, S. Kennedy, Y. Bei, D. Conte Jr., et al., 2006 Functional proteomics reveals the biochemical niche of C. elegans DCR-1 in multiple small-RNA-mediated pathways. Cell 124: 343-354.
    • (2006) Cell , vol.124 , pp. 343-354
    • Duchaine, T.F.1    Wohlschlegel, J.A.2    Kennedy, S.3    Bei, Y.4    Conte Jr., D.5
  • 10
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by doublestranded RNA in Caenorhabditis elegans
    • Fire, A., S. Xu, M. K. Montgomery, S. A. Kostas, S. E. Driver et al., 1998 Potent and specific genetic interference by doublestranded RNA in Caenorhabditis elegans. Nature 391: 806-811.
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5
  • 11
    • 52949091512 scopus 로고    scopus 로고
    • Transsplicing in C. elegans generates the negative RNAi regulator ERI-6/7
    • Fischer, S. E., M. D. Butler, Q. Pan, and G. Ruvkun, 2008 Transsplicing in C. elegans generates the negative RNAi regulator ERI-6/7. Nature 455: 491-496.
    • (2008) Nature , vol.455 , pp. 491-496
    • Fischer, S.E.1    Butler, M.D.2    Pan, Q.3    Ruvkun, G.4
  • 12
    • 81755177836 scopus 로고    scopus 로고
    • The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications
    • Fischer, S. E., T. A. Montgomery, C. Zhang, N. Fahlgren, P. C. Breen et al., 2011 The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications. PLoS Genet. 7: e1002369.
    • (2011) PLoS Genet , vol.7
    • Fischer, S.E.1    Montgomery, T.A.2    Zhang, C.3    Fahlgren, N.4    Breen, P.C.5
  • 13
    • 71549139424 scopus 로고    scopus 로고
    • A Caenorhabditis elegans RNA-directed RNA polymerase in sperm development and endogenous RNA interference
    • Gent, J. I., M. Schvarzstein, A. M. Villeneuve, S. G. Gu, V. Jantsch et al., 2009 A Caenorhabditis elegans RNA-directed RNA polymerase in sperm development and endogenous RNA interference. Genetics 183: 1297-1314.
    • (2009) Genetics , vol.183 , pp. 1297-1314
    • Gent, J.I.1    Schvarzstein, M.2    Villeneuve, A.M.3    Gu, S.G.4    Jantsch, V.5
  • 14
    • 77649253620 scopus 로고    scopus 로고
    • Distinct phases of siRNA synthesis in an endogenous RNAi pathway in C. elegans soma
    • Gent, J. I., A. T. Lamm, D.M. Pavelec, J. M. Maniar, P. Parameswaran et al., 2010 Distinct phases of siRNA synthesis in an endogenous RNAi pathway in C. elegans soma. Mol. Cell 37: 679-689.
    • (2010) Mol. Cell , vol.37 , pp. 679-689
    • Gent, J.I.1    Lamm, A.T.2    Pavelec, D.M.3    Maniar, J.M.4    Parameswaran, P.5
  • 15
    • 0034737747 scopus 로고    scopus 로고
    • Genetic requirements for inheritance of RNAi in C. elegans
    • Grishok, A., H. Tabara, and C. C. Mello, 2000 Genetic requirements for inheritance of RNAi in C. elegans. Science 287: 2494-2497.
    • (2000) Science , vol.287 , pp. 2494-2497
    • Grishok, A.1    Tabara, H.2    Mello, C.C.3
  • 16
    • 84856239588 scopus 로고    scopus 로고
    • Amplification of siRNA in Caenorhabditis elegans generates a transgenerational sequence-targeted histone H3 lysine 9 methylation footprint
    • Gu, S. G., J. Pak, S. Guang, J. M. Maniar, S. Kennedy et al., 2012 Amplification of siRNA in Caenorhabditis elegans generates a transgenerational sequence-targeted histone H3 lysine 9 methylation footprint. Nat. Genet. 44: 157-164.
    • (2012) Nat. Genet , vol.44 , pp. 157-164
    • Gu, S.G.1    Pak, J.2    Guang, S.3    Maniar, J.M.4    Kennedy, S.5
  • 17
    • 48249091655 scopus 로고    scopus 로고
    • An Argonaute transports siRNAs from the cytoplasm to the nucleus
    • Guang, S., A. F. Bochner, D. M. Pavelec, K. B. Burkhart, S. Harding et al., 2008 An Argonaute transports siRNAs from the cytoplasm to the nucleus. Science 321: 537-541.
    • (2008) Science , vol.321 , pp. 537-541
    • Guang, S.1    Bochner, A.F.2    Pavelec, D.M.3    Burkhart, K.B.4    Harding, S.5
  • 18
    • 77953961505 scopus 로고    scopus 로고
    • Small regulatory RNAs inhibit RNA polymerase II during the elongation phase of transcription
    • Guang, S., A. F. Bochner, K. B. Burkhart, N. Burton, D. M. Pavelec et al., 2010 Small regulatory RNAs inhibit RNA polymerase II during the elongation phase of transcription. Nature 465: 1097-1101.
    • (2010) Nature , vol.465 , pp. 1097-1101
    • Guang, S.1    Bochner, A.F.2    Burkhart, K.B.3    Burton, N.4    Pavelec, D.M.5
  • 19
    • 0037062951 scopus 로고    scopus 로고
    • RNA interference
    • Hannon, G. J., 2002 RNA interference. Nature 418: 244-251.
    • (2002) Nature , vol.418 , pp. 244-251
    • Hannon, G.J.1
  • 20
    • 60549108368 scopus 로고    scopus 로고
    • Export of RNA silencing from C. elegans tissues does not require the RNA channel SID-1
    • Jose, A. M., J. J. Smith, and C. P. Hunter, 2009 Export of RNA silencing from C. elegans tissues does not require the RNA channel SID-1. Proc. Natl. Acad. Sci. USA 106: 2283-2288.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 2283-2288
    • Jose, A.M.1    Smith, J.J.2    Hunter, C.P.3
  • 21
    • 0038725897 scopus 로고    scopus 로고
    • Genome-wide RNAi screening in Caenorhabditis elegans
    • Kamath, R. S., and J. Ahringer, 2003 Genome-wide RNAi screening in Caenorhabditis elegans. Methods 30: 313-321.
    • (2003) Methods , vol.30 , pp. 313-321
    • Kamath, R.S.1    Ahringer, J.2
  • 22
    • 1342346710 scopus 로고    scopus 로고
    • A conserved siRNAdegrading RNase negatively regulates RNA interference in C. elegans
    • Kennedy, S., D. Wang, and G. Ruvkun, 2004 A conserved siRNAdegrading RNase negatively regulates RNA interference in C. elegans. Nature 427: 645-649.
    • (2004) Nature , vol.427 , pp. 645-649
    • Kennedy, S.1    Wang, D.2    Ruvkun, G.3
  • 23
    • 21044446786 scopus 로고    scopus 로고
    • Functional genomic analysis of RNA interference in C. elegans
    • Kim, J. K., H. W. Gabel, R. S. Kamath, M. Tewari, A. Pasquinelli et al., 2005 Functional genomic analysis of RNA interference in C. elegans. Science 308: 1164-1167.
    • (2005) Science , vol.308 , pp. 1164-1167
    • Kim, J.K.1    Gabel, H.W.2    Kamath, R.S.3    Tewari, M.4    Pasquinelli, A.5
  • 24
    • 33645464445 scopus 로고    scopus 로고
    • Interacting endogenous and exogenous RNAi pathways in Caenorhabditis elegans
    • Lee, R. C., C. M. Hammell, and V. Ambros, 2006 Interacting endogenous and exogenous RNAi pathways in Caenorhabditis elegans. RNA 12: 589-597.
    • (2006) RNA , vol.12 , pp. 589-597
    • Lee, R.C.1    Hammell, C.M.2    Ambros, V.3
  • 25
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2 (-Delta Delta C(T))
    • Livak, K. J., and T. D. Schmittgen, 2001 Analysis of relative gene expression data using real-time quantitative PCR and the 2 (-Delta Delta C(T)). Method. Methods 25: 402-408.
    • (2001) Method. Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 26
    • 33846527241 scopus 로고    scopus 로고
    • Distinct populations of primary and secondary effectors during RNAi in C. elegans
    • Pak, J., and A. Fire, 2007 Distinct populations of primary and secondary effectors during RNAi in C. elegans. Science 315: 241-244.
    • (2007) Science , vol.315 , pp. 241-244
    • Pak, J.1    Fire, A.2
  • 27
    • 84869065524 scopus 로고    scopus 로고
    • Protection from Feed-Forward Amplification in an Amplified RNAi Mechanism
    • Pak, J., J. M. Maniar, C. C. Mello, and A. Fire, 2012 Protection from Feed-Forward Amplification in an Amplified RNAi Mechanism. Cell 151: 885-899.
    • (2012) Cell , vol.151 , pp. 885-899
    • Pak, J.1    Maniar, J.M.2    Mello, C.C.3    Fire, A.4
  • 28
    • 71549147194 scopus 로고    scopus 로고
    • Requirement for the ERI/DICER complex in endogenous RNA interference and sperm development in Caenorhabditis elegans
    • Pavelec, D. M., J. Lachowiec, T. F. Duchaine, H. E. Smith, and S. Kennedy, 2009 Requirement for the ERI/DICER complex in endogenous RNA interference and sperm development in Caenorhabditis elegans. Genetics 183: 1283-1295.
    • (2009) Genetics , vol.183 , pp. 1283-1295
    • Pavelec, D.M.1    Lachowiec, J.2    Duchaine, T.F.3    Smith, H.E.4    Kennedy, S.5
  • 29
    • 0035099902 scopus 로고    scopus 로고
    • Creation of lowcopy integrated transgenic lines in Caenorhabditis elegans
    • Praitis, V., E. Casey, D. Collar, and J. Austin, 2001 Creation of lowcopy integrated transgenic lines in Caenorhabditis elegans. Genetics 157: 1217-1226.
    • (2001) Genetics , vol.157 , pp. 1217-1226
    • Praitis, V.1    Casey, E.2    Collar, D.3    Austin, J.4
  • 30
    • 0037031152 scopus 로고    scopus 로고
    • Loss of the putative RNA-directed RNA polymerase RRF-3 makes C. elegans hypersensitive to RNAi
    • Simmer, F., M. Tijsterman, S. Parrish, S. P. Koushika, M. L. Nonet et al., 2002 Loss of the putative RNA-directed RNA polymerase RRF-3 makes C. elegans hypersensitive to RNAi. Curr. Biol. 12: 1317-1319.
    • (2002) Curr. Biol , vol.12 , pp. 1317-1319
    • Simmer, F.1    Tijsterman, M.2    Parrish, S.3    Koushika, S.P.4    Nonet, M.L.5
  • 31
    • 30544440966 scopus 로고    scopus 로고
    • The Caenorhabditis elegans GATA factor elt-1 is essential for differentiation and maintenance of hypodermal seam cells and for normal locomotion
    • Smith, J. A., P. McGarr, and J. S. Gilleard, 2005 The Caenorhabditis elegans GATA factor elt-1 is essential for differentiation and maintenance of hypodermal seam cells and for normal locomotion. J. Cell Sci. 118: 5709-5719.
    • (2005) J. Cell Sci , vol.118 , pp. 5709-5719
    • Smith, J.A.1    McGarr, P.2    Gilleard, J.S.3
  • 32
    • 0032717319 scopus 로고    scopus 로고
    • The rde-1 gene, RNA interference, and transposon silencing in C. elegans
    • Tabara, H., M. Sarkissian, W. G. Kelly, J. Fleenor, A. Grishok et al., 1999 The rde-1 gene, RNA interference, and transposon silencing in C. elegans. Cell 99: 123-132.
    • (1999) Cell , vol.99 , pp. 123-132
    • Tabara, H.1    Sarkissian, M.2    Kelly, W.G.3    Fleenor, J.4    Grishok, A.5
  • 33
    • 0037188904 scopus 로고    scopus 로고
    • The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans
    • Tabara, H., E. Yigit, H. Siomi, and C. C. Mello, 2002 The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans. Cell 109: 861-871.
    • (2002) Cell , vol.109 , pp. 861-871
    • Tabara, H.1    Yigit, E.2    Siomi, H.3    Mello, C.C.4
  • 34
    • 0032578911 scopus 로고    scopus 로고
    • Specific interference by ingested dsRNA
    • Timmons, L., and A. Fire, 1998 Specific interference by ingested dsRNA. Nature 395: 854.
    • (1998) Nature , vol.395 , pp. 854
    • Timmons, L.1    Fire, A.2
  • 36
    • 23144462374 scopus 로고    scopus 로고
    • Somatic misexpression of germline P granules and enhanced RNA interference in retinoblastoma pathway mutants
    • Wang, D., S. Kennedy, D. Conte Jr., J. K. Kim, H. W. Gabel et al., 2005 Somatic misexpression of germline P granules and enhanced RNA interference in retinoblastoma pathway mutants. Nature 436: 593-597.
    • (2005) Nature , vol.436 , pp. 593-597
    • Wang, D.1    Kennedy, S.2    Conte Jr., D.3    Kim, J.K.4    Gabel, H.W.5
  • 37
    • 77951169802 scopus 로고    scopus 로고
    • Dicer's helicase domain is required for accumulation of some, but not all, C. elegans endogenous siRNAs
    • Welker, N. C., D. M. Pavelec, D. A. Nix, T. F. Duchaine, S. Kennedy et al., 2010 Dicer's helicase domain is required for accumulation of some, but not all, C. elegans endogenous siRNAs. RNA 16: 893-903.
    • (2010) RNA , vol.16 , pp. 893-903
    • Welker, N.C.1    Pavelec, D.M.2    Nix, D.A.3    Duchaine, T.F.4    Kennedy, S.5
  • 38
    • 0037192490 scopus 로고    scopus 로고
    • Systemic RNAi in C. elegans requires the putative transmembrane protein SID-1
    • Winston, W. M., C. Molodowitch, and C. P. Hunter, 2002 Systemic RNAi in C. elegans requires the putative transmembrane protein SID-1. Science 295: 2456-2459.
    • (2002) Science , vol.295 , pp. 2456-2459
    • Winston, W.M.1    Molodowitch, C.2    Hunter, C.P.3
  • 39
    • 1242317811 scopus 로고    scopus 로고
    • Intermediate filaments are required for C. elegans epidermal elongation
    • Woo, W.M., A. Goncharov, Y. Jin, and A.D. Chisholm, 2004 Intermediate filaments are required for C. elegans epidermal elongation. Dev. Biol. 267: 216-229.
    • (2004) Dev. Biol , vol.267 , pp. 216-229
    • Woo, W.M.1    Goncharov, A.2    Jin, Y.3    Chisholm, A.D.4
  • 40
    • 84860893967 scopus 로고    scopus 로고
    • Repression of germline RNAi pathways in somatic cells by retinoblastoma pathway chromatin complexes
    • Wu, X., Z. Shi, M. Cui, M. Han, and G. Ruvkun, 2012 Repression of germline RNAi pathways in somatic cells by retinoblastoma pathway chromatin complexes. PLoS Genet. 8: e1002542.
    • (2012) PLoS Genet , vol.8
    • Wu, X.1    Shi, Z.2    Cui, M.3    Han, M.4    Ruvkun, G.5
  • 41
    • 33750824034 scopus 로고    scopus 로고
    • Analysis of the C. elegans Argonaute family reveals that distinct Argonautes act sequentially during RNAi
    • Yigit, E., P. J. Batista, Y. Bei, K. M. Pang, C. C. Chen et al., 2006 Analysis of the C. elegans Argonaute family reveals that distinct Argonautes act sequentially during RNAi. Cell 127: 747-757.
    • (2006) Cell , vol.127 , pp. 747-757
    • Yigit, E.1    Batista, P.J.2    Bei, Y.3    Pang, K.M.4    Chen, C.C.5
  • 42
    • 79952151278 scopus 로고    scopus 로고
    • Mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans
    • Zhang, C., T. A. Montgomery, H. W. Gabel, S. E. Fischer, C. M. Phillips et al., 2011 Mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans. Proc. Natl. Acad. Sci. USA 108: 1201-1208.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 1201-1208
    • Zhang, C.1    Montgomery, T.A.2    Gabel, H.W.3    Fischer, S.E.4    Phillips, C.M.5
  • 43
    • 79955942579 scopus 로고    scopus 로고
    • Tissue specificity of Caenorhabditis elegans enhanced RNA interference mutants
    • Zhuang, J. J., and C. P. Hunter, 2011 Tissue specificity of Caenorhabditis elegans enhanced RNA interference mutants. Genetics 188: 235-237.
    • (2011) Genetics , vol.188 , pp. 235-237
    • Zhuang, J.J.1    Hunter, C.P.2
  • 44
    • 84871564029 scopus 로고    scopus 로고
    • The influence of competition among C. elegans small RNA pathways on development
    • Zhuang, J. J., and C. P. Hunter, 2012 The influence of competition among C. elegans small RNA pathways on development. Genes 3: 671-685.
    • (2012) Genes , vol.3 , pp. 671-685
    • Zhuang, J.J.1    Hunter, C.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.