메뉴 건너뛰기




Volumn 3, Issue 4, 2012, Pages 671-685

The influence of competition among C. elegans small RNA pathways on development

Author keywords

Endogenous siRNAs; Enhanced RNAi; Exogenous RNAi; microRNAs; RNA regulation

Indexed keywords

MESSENGER RNA; MICRORNA; RNA DIRECTED RNA POLYMERASE; SMALL INTERFERING RNA;

EID: 84871564029     PISSN: None     EISSN: 20734425     Source Type: Journal    
DOI: 10.3390/genes3040671     Document Type: Article
Times cited : (19)

References (49)
  • 1
    • 77954385645 scopus 로고    scopus 로고
    • Small RNA-mediated gene silencing pathways in C. elegans
    • Fischer, S.E. Small RNA-mediated gene silencing pathways in C. elegans. Int J. Biochem.Cell Biol. 2010, 42, 1306-1315.
    • (2010) Int J. Biochem.Cell Biol , vol.42 , pp. 1306-1315
    • Fischer, S.E.1
  • 2
    • 79957533104 scopus 로고    scopus 로고
    • Non-coding RNAs as regulators of gene expression and epigenetics
    • Kaikkonen, M.U.; Lam, M.T.; Glass, C.K. Non-coding RNAs as regulators of gene expression and epigenetics. Cardiovasc. Res. 2011, 90, 430-440.
    • (2011) Cardiovasc. Res , vol.90 , pp. 430-440
    • Kaikkonen, M.U.1    Lam, M.T.2    Glass, C.K.3
  • 3
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • Lee, R.C.; Feinbaum, R.L.; Ambros, V. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 1993, 75, 843-854.
    • (1993) Cell , vol.75 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 6
    • 38949085301 scopus 로고    scopus 로고
    • Exploration of small RNAs
    • doi:10.1371/journal.pgen.0040022
    • Kawaji, H.; Hayashizaki, Y. Exploration of small RNAs. PLoS Genet. 2008, doi:10.1371/journal.pgen.0040022.
    • (2008) PLoS Genet
    • Kawaji, H.1    Hayashizaki, Y.2
  • 7
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • Fire, A.; Xu, S.; Montgomery, M.K.; Kostas, S.A.; Driver, S.E.; Mello, C.C. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 1998, 391, 806-811.
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 8
    • 33645464445 scopus 로고    scopus 로고
    • Interacting endogenous and exogenous RNAi pathways in Caenorhabditis elegans
    • Lee, R.C.; Hammell, C.M.; Ambros, V. Interacting endogenous and exogenous RNAi pathways in Caenorhabditis elegans. RNA 2006, 12, 589-597.
    • (2006) RNA , vol.12 , pp. 589-597
    • Lee, R.C.1    Hammell, C.M.2    Ambros, V.3
  • 9
    • 26944450901 scopus 로고    scopus 로고
    • RNAi mechanisms in Caenorhabditis elegans
    • Grishok, A. RNAi mechanisms in Caenorhabditis elegans. FEBS Lett. 2005, 579, 5932-5939.
    • (2005) FEBS Lett , vol.579 , pp. 5932-5939
    • Grishok, A.1
  • 12
    • 80053588096 scopus 로고    scopus 로고
    • Post-transcriptional gene silencing by RNA interference in non-mammalian vertebrate systems: Where do we stand?
    • Sifuentes-Romero, I.; Milton, S.L.; Garcia-Gasca, A. Post-transcriptional gene silencing by RNA interference in non-mammalian vertebrate systems: where do we stand? Mutat. Res. 2011, 728, 158-171.
    • (2011) Mutat. Res , vol.728 , pp. 158-171
    • Sifuentes-Romero, I.1    Milton, S.L.2    Garcia-Gasca, A.3
  • 14
    • 67649671961 scopus 로고    scopus 로고
    • Long noncoding RNAs: Functional surprises from the RNA world
    • Wilusz, J.E.; Sunwoo, H.; Spector, D.L. Long noncoding RNAs: Functional surprises from the RNA world. Genes Dev. 2009, 23, 1494-1504.
    • (2009) Genes Dev , vol.23 , pp. 1494-1504
    • Wilusz, J.E.1    Sunwoo, H.2    Spector, D.L.3
  • 16
    • 58149350460 scopus 로고    scopus 로고
    • ADBP-1 regulates an ADAR RNA-editing enzyme to antagonize RNA-interference-mediated gene silencing in Caenorhabditis elegans
    • Ohta, H.; Fujiwara, M.; Ohshima, Y.; Ishihara, T. ADBP-1 regulates an ADAR RNA-editing enzyme to antagonize RNA-interference-mediated gene silencing in Caenorhabditis elegans. Genetics 2008, 180, 785-796.
    • (2008) Genetics , vol.180 , pp. 785-796
    • Ohta, H.1    Fujiwara, M.2    Ohshima, Y.3    Ishihara, T.4
  • 17
    • 84856239588 scopus 로고    scopus 로고
    • Amplification of siRNA in Caenorhabditis elegans generates a transgenerational sequence-targeted histone H3 lysine 9 methylation footprint
    • Gu, S.G.; Pak, J.; Guang, S.; Maniar, J.M.; Kennedy, S.; Fire, A. Amplification of siRNA in Caenorhabditis elegans generates a transgenerational sequence-targeted histone H3 lysine 9 methylation footprint. Nat. Genet. 2012, 44, 157-164.
    • (2012) Nat. Genet , vol.44 , pp. 157-164
    • Gu, S.G.1    Pak, J.2    Guang, S.3    Maniar, J.M.4    Kennedy, S.5    Fire, A.6
  • 18
  • 20
    • 1342346710 scopus 로고    scopus 로고
    • A conserved siRNA-degrading RNase negatively regulates RNA interference in C. elegans
    • Kennedy, S.; Wang, D.; Ruvkun, G. A conserved siRNA-degrading RNase negatively regulates RNA interference in C. elegans. Nature 2004, 427, 645-649.
    • (2004) Nature , vol.427 , pp. 645-649
    • Kennedy, S.1    Wang, D.2    Ruvkun, G.3
  • 22
    • 52949091512 scopus 로고    scopus 로고
    • Trans-splicing in C. elegans generates the negative RNAi regulator ERI-6/7
    • Fischer, S.E.; Butler, M.D.; Pan, Q.; Ruvkun, G. Trans-splicing in C. elegans generates the negative RNAi regulator ERI-6/7. Nature 2008, 455, 491-496.
    • (2008) Nature , vol.455 , pp. 491-496
    • Fischer, S.E.1    Butler, M.D.2    Pan, Q.3    Ruvkun, G.4
  • 23
    • 71549147194 scopus 로고    scopus 로고
    • Requirement for the ERI/DICER complex in endogenous RNA interference and sperm development in Caenorhabditis elegans
    • Pavelec, D.M.; Lachowiec, J.; Duchaine, T.F.; Smith, H.E.; Kennedy, S. Requirement for the ERI/DICER complex in endogenous RNA interference and sperm development in Caenorhabditis elegans. Genetics 2009, 183, 1283-1295.
    • (2009) Genetics , vol.183 , pp. 1283-1295
    • Pavelec, D.M.1    Lachowiec, J.2    Duchaine, T.F.3    Smith, H.E.4    Kennedy, S.5
  • 24
    • 71549139424 scopus 로고    scopus 로고
    • A Caenorhabditis elegans RNA-directed RNA polymerase in sperm development and endogenous RNA interference
    • Gent, J.I.; Schvarzstein, M.; Villeneuve, A.M.; Gu, S.G.; Jantsch, V.; Fire, A.Z.; Baudrimont, A. A Caenorhabditis elegans RNA-directed RNA polymerase in sperm development and endogenous RNA interference. Genetics 2009, 183, 1297-1314.
    • (2009) Genetics , vol.183 , pp. 1297-1314
    • Gent, J.I.1    Schvarzstein, M.2    Villeneuve, A.M.3    Gu, S.G.4    Jantsch, V.5    Fire, A.Z.6    Baudrimont, A.7
  • 25
  • 27
    • 0035929322 scopus 로고    scopus 로고
    • A role for the RNase III enzyme DCR-1 in RNA interference and germ line development in Caenorhabditis elegans
    • Knight, S.W.; Bass, B.L. A role for the RNase III enzyme DCR-1 in RNA interference and germ line development in Caenorhabditis elegans. Science 2001, 293, 2269-2271.
    • (2001) Science , vol.293 , pp. 2269-2271
    • Knight, S.W.1    Bass, B.L.2
  • 28
    • 0035887005 scopus 로고    scopus 로고
    • Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C-elegans
    • Ketting, R.F.; Fischer, S.E.J.; Bernstein, E.; Sijen, T.; Hannon, G.J.; Plasterk, R.H.A. Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C-elegans. Gene Dev. 2001, 15, 2654-2659.
    • (2001) Gene Dev , vol.15 , pp. 2654-2659
    • Ketting, R.F.1    Fischer, S.E.J.2    Bernstein, E.3    Sijen, T.4    Hannon, G.J.5    Plasterk, R.H.A.6
  • 29
    • 84871604904 scopus 로고    scopus 로고
    • Available online, accessed on 27, September
    • Page, A.P.; Johnstone, I.L. The cuticle. Available online: http://www.wormbook.org/chapters/www_cuticle/cuticle.html (accessed on 27 September 2012).
    • (2012) The Cuticle
    • Page, A.P.1    Johnstone, I.L.2
  • 30
    • 77951169802 scopus 로고    scopus 로고
    • Dicer's helicase domain is required for accumulation of some, but not all, C. elegans endogenous siRNAs
    • Welker, N.C.; Pavelec, D.M.; Nix, D.A.; Duchaine, T.F.; Kennedy, S.; Bass, B.L. Dicer's helicase domain is required for accumulation of some, but not all, C. elegans endogenous siRNAs. RNA 2010, 16, 893-903.
    • (2010) RNA , vol.16 , pp. 893-903
    • Welker, N.C.1    Pavelec, D.M.2    Nix, D.A.3    Duchaine, T.F.4    Kennedy, S.5    Bass, B.L.6
  • 31
    • 77955279152 scopus 로고    scopus 로고
    • Cell autonomous specification of temporal identity by Caenorhabditis elegans microRNA lin-4
    • Zhang, H.; Fire, A.Z. Cell autonomous specification of temporal identity by Caenorhabditis elegans microRNA lin-4. Dev. Biol. 2010, 344, 603-610.
    • (2010) Dev. Biol , vol.344 , pp. 603-610
    • Zhang, H.1    Fire, A.Z.2
  • 32
    • 84863296768 scopus 로고    scopus 로고
    • Selection of reliable reference genes in Caenorhabditis elegans for analysis of nanotoxicity
    • doi:10.1371/journal.pone.0031849
    • Zhang, Y.; Chen, D.; Smith, M.A.; Zhang, B.; Pan, X. Selection of reliable reference genes in Caenorhabditis elegans for analysis of nanotoxicity. PLoS One 2012, doi:10.1371/journal.pone.0031849.
    • (2012) PLoS One
    • Zhang, Y.1    Chen, D.2    Smith, M.A.3    Zhang, B.4    Pan, X.5
  • 33
    • 79955942579 scopus 로고    scopus 로고
    • Tissue Specificity of Caenorhabditis elegans Enhanced RNA Interference Mutants
    • Zhuang, J.J.; Hunter, C.P. Tissue Specificity of Caenorhabditis elegans Enhanced RNA Interference Mutants. Genetics 2011, 188, 235-237.
    • (2011) Genetics , vol.188 , pp. 235-237
    • Zhuang, J.J.1    Hunter, C.P.2
  • 34
    • 0029898363 scopus 로고    scopus 로고
    • Temporal reiteration of a precise gene expression pattern during nematode development
    • Johnstone, I.L.; Barry, J.D. Temporal reiteration of a precise gene expression pattern during nematode development. EMBO J. 1996, 15, 3633-3639.
    • (1996) EMBO J , vol.15 , pp. 3633-3639
    • Johnstone, I.L.1    Barry, J.D.2
  • 35
    • 0025879093 scopus 로고
    • Autonomy and nonautonomy of sex determination in triploid intersex mosaics of C. elegans
    • Schedin, P.; Hunter, C.P.; Wood, W.B. Autonomy and nonautonomy of sex determination in triploid intersex mosaics of C. elegans. Development 1991, 112, 863-879.
    • (1991) Development , vol.112 , pp. 863-879
    • Schedin, P.1    Hunter, C.P.2    Wood, W.B.3
  • 38
    • 78650516088 scopus 로고    scopus 로고
    • Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses
    • Shen, J.; Xie, K.; Xiong, L. Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses. Mol. Genet. Genomics 2010, 284, 477-488.
    • (2010) Mol. Genet. Genomics , vol.284 , pp. 477-488
    • Shen, J.1    Xie, K.2    Xiong, L.3
  • 39
    • 0016063911 scopus 로고
    • The genetics of Caenorhabditis elegans
    • Brenner, S. The genetics of Caenorhabditis elegans. Genetics 1974, 77, 71-94.
    • (1974) Genetics , vol.77 , pp. 71-94
    • Brenner, S.1
  • 40
    • 0032578911 scopus 로고    scopus 로고
    • Specific interference by ingested dsRNA
    • Timmons, L.; Fire, A. Specific interference by ingested dsRNA. Nature 1998, 395, 854.
    • (1998) Nature , vol.395 , pp. 854
    • Timmons, L.1    Fire, A.2
  • 41
    • 0037192490 scopus 로고    scopus 로고
    • Systemic RNAi in C. elegans requires the putative transmembrane protein SID-1
    • Winston, W.M.; Molodowitch, C.; Hunter, C.P. Systemic RNAi in C. elegans requires the putative transmembrane protein SID-1. Science 2002, 295, 2456-2459.
    • (2002) Science , vol.295 , pp. 2456-2459
    • Winston, W.M.1    Molodowitch, C.2    Hunter, C.P.3
  • 42
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • Livak, K.J.; Schmittgen, T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 2001, 25, 402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 43
    • 84855554457 scopus 로고    scopus 로고
    • New competition in RNA regulation
    • Khvorova, A.; Wolfson, A. New competition in RNA regulation. Nat. Biotechnol 2012, 30, 58-59.
    • (2012) Nat. Biotechnol , vol.30 , pp. 58-59
    • Khvorova, A.1    Wolfson, A.2
  • 49
    • 0037322606 scopus 로고    scopus 로고
    • RNAi: Mammalian oocytes do it without RNA-dependent RNA polymerase
    • Stein, P.; Svoboda, P.; Anger, M.; Schultz, R.M. RNAi: mammalian oocytes do it without RNA-dependent RNA polymerase. RNA 2003, 9, 187-192.
    • (2003) RNA , vol.9 , pp. 187-192
    • Stein, P.1    Svoboda, P.2    Anger, M.3    Schultz, R.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.