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Volumn 8, Issue 5, 2013, Pages

Distinguishable In Vitro Binding Mode of Monomeric TRBP and Dimeric PACT with siRNA

Author keywords

[No Author keywords available]

Indexed keywords

ARGONAUTE PROTEIN; DICER; RNA BINDING PROTEIN; SMALL INTERFERING RNA;

EID: 84877059043     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0063434     Document Type: Article
Times cited : (22)

References (33)
  • 1
    • 79751485564 scopus 로고    scopus 로고
    • The many faces of RNAi
    • Ketting RF, (2011) The many faces of RNAi. Dev Cell 20: 148-161.
    • (2011) Dev Cell , vol.20 , pp. 148-161
    • Ketting, R.F.1
  • 2
    • 58749113430 scopus 로고    scopus 로고
    • A three-dimensional view of the molecular machinery of RNA interference
    • Jinek M, Doudna JA, (2009) A three-dimensional view of the molecular machinery of RNA interference. Nature 457: 405-412.
    • (2009) Nature , vol.457 , pp. 405-412
    • Jinek, M.1    Doudna, J.A.2
  • 3
    • 58749096360 scopus 로고    scopus 로고
    • On the road to reading the RNA-interference code
    • Siomi H, Siomi MC, (2009) On the road to reading the RNA-interference code. Nature 457: 396-404.
    • (2009) Nature , vol.457 , pp. 396-404
    • Siomi, H.1    Siomi, M.C.2
  • 4
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • Bernstein E, Caudy AA, Hammond SM, Hannon GJ, (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409: 363-366.
    • (2001) Nature , vol.409 , pp. 363-366
    • Bernstein, E.1    Caudy, A.A.2    Hammond, S.M.3    Hannon, G.J.4
  • 5
    • 0035800521 scopus 로고    scopus 로고
    • A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA
    • Hutvàger G, McLachlan J, Pasquinelli AE, Bàlint E, Tuschl T, et al. (2001) A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science 293: 834-838.
    • (2001) Science , vol.293 , pp. 834-838
    • Hutvàger, G.1    McLachlan, J.2    Pasquinelli, A.E.3    Bàlint, E.4    Tuschl, T.5
  • 6
    • 0034737298 scopus 로고    scopus 로고
    • RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals
    • Zamore PD, Tuschl T, Sharp PA, Bartel DP, (2000) RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals. Cell 101: 25-33.
    • (2000) Cell , vol.101 , pp. 25-33
    • Zamore, P.D.1    Tuschl, T.2    Sharp, P.A.3    Bartel, D.P.4
  • 9
    • 23644433363 scopus 로고    scopus 로고
    • TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing
    • Chentrimada TP, Gregory RK, Kumaraswamy E, Norman J, Cooch N, et al. (2005) TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing. Nature 436: 740-744.
    • (2005) Nature , vol.436 , pp. 740-744
    • Chentrimada, T.P.1    Gregory, R.K.2    Kumaraswamy, E.3    Norman, J.4    Cooch, N.5
  • 10
    • 79959872313 scopus 로고    scopus 로고
    • siRNA repositioning for guide strand selection by human Dicer complexes
    • Noland CL, Ma Endo, Doudna JA, (2011) siRNA repositioning for guide strand selection by human Dicer complexes. Mol Cell 43: 110-121.
    • (2011) Mol Cell , vol.43 , pp. 110-121
    • Noland, C.L.1    Endo, M.2    Doudna, J.A.3
  • 11
    • 22144489833 scopus 로고    scopus 로고
    • RNAi: the nuts and bolts of the RISC machine
    • Filipowicz W, (2005) RNAi: the nuts and bolts of the RISC machine. Cell 122: 17-20.
    • (2005) Cell , vol.122 , pp. 17-20
    • Filipowicz, W.1
  • 12
    • 27744537851 scopus 로고    scopus 로고
    • Human RISC couples microRNA biogenesis and posttranscriptional gene silencing
    • Gregory RI, Chendrimada TP, Cooch N, Shiekhattar R, (2005) Human RISC couples microRNA biogenesis and posttranscriptional gene silencing. Cell 123: 631-640.
    • (2005) Cell , vol.123 , pp. 631-640
    • Gregory, R.I.1    Chendrimada, T.P.2    Cooch, N.3    Shiekhattar, R.4
  • 14
    • 34547115237 scopus 로고    scopus 로고
    • Human TRBP and PACT directly interact with each other and associate with dicer to facilitate the production of small interfering RNA
    • Kok KH, Ng MHJ, Ching YP, Jin DY, (2007) Human TRBP and PACT directly interact with each other and associate with dicer to facilitate the production of small interfering RNA. J Biol Chem 282: 17649-17657.
    • (2007) J Biol Chem , vol.282 , pp. 17649-17657
    • Kok, K.H.1    Ng, M.H.J.2    Ching, Y.P.3    Jin, D.Y.4
  • 15
    • 82755170606 scopus 로고    scopus 로고
    • The role of Dicer protein partners in the processing of microRNA precursors
    • Koscianska E, Starega-Roslan J, Krzyzosiak WJ, (2011) The role of Dicer protein partners in the processing of microRNA precursors. PloS ONE 6: e28548.
    • (2011) PloS ONE , vol.6
    • Koscianska, E.1    Starega-Roslan, J.2    Krzyzosiak, W.J.3
  • 16
    • 0025876881 scopus 로고
    • Characterization of a human TAR RNA-binding protein that activates the HIV-1 LTR
    • Gatignol A, Buckler-White A, Berkhout B, Jeang KT, (1991) Characterization of a human TAR RNA-binding protein that activates the HIV-1 LTR. Science 251: 1597-1600.
    • (1991) Science , vol.251 , pp. 1597-1600
    • Gatignol, A.1    Buckler-White, A.2    Berkhout, B.3    Jeang, K.T.4
  • 17
    • 0034052232 scopus 로고    scopus 로고
    • Analysis of a binding difference between the two dsRNA-binding domains in TRBP reveals the modular function of a KR-helix motif
    • Daviet L, Erard M, Dorin D, Duarte M, Vaquero C, et al. (2000) Analysis of a binding difference between the two dsRNA-binding domains in TRBP reveals the modular function of a KR-helix motif. Eur J Biochem 267: 2419-2431.
    • (2000) Eur J Biochem , vol.267 , pp. 2419-2431
    • Daviet, L.1    Erard, M.2    Dorin, D.3    Duarte, M.4    Vaquero, C.5
  • 18
    • 77952633582 scopus 로고    scopus 로고
    • Structure of Arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing
    • Yang SW, Chen HY, Yang J, Machida S, Chua NH, et al. (2010) Structure of Arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing. Structure 18: 594-605.
    • (2010) Structure , vol.18 , pp. 594-605
    • Yang, S.W.1    Chen, H.Y.2    Yang, J.3    Machida, S.4    Chua, N.H.5
  • 19
    • 78650763143 scopus 로고    scopus 로고
    • Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein
    • Yamashita S, Nagata T, Kawazoe M, Takemoto C, Kigawa T, et al. (2011) Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein. Protein Sci 20: 118-130.
    • (2011) Protein Sci , vol.20 , pp. 118-130
    • Yamashita, S.1    Nagata, T.2    Kawazoe, M.3    Takemoto, C.4    Kigawa, T.5
  • 20
    • 27144550559 scopus 로고    scopus 로고
    • TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing
    • Haase AD, Jaskiewicz L, Zhang H, Lainé S, Sack R, et al. (2005) TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing. EMBO Rep 6: 961-967.
    • (2005) EMBO Rep , vol.6 , pp. 961-967
    • Haase, A.D.1    Jaskiewicz, L.2    Zhang, H.3    Lainé, S.4    Sack, R.5
  • 21
    • 45849141942 scopus 로고    scopus 로고
    • Interactions between the double-stranded RNA-binding proteins TRBP and PACT define the Medipal domain that mediates protein-protein interactions
    • Laraki G, Clerzius G, Daher A, Melendez-Peña C, Daniels S, et al. (2008) Interactions between the double-stranded RNA-binding proteins TRBP and PACT define the Medipal domain that mediates protein-protein interactions. RNA Biol 5: 92-103.
    • (2008) RNA Biol , vol.5 , pp. 92-103
    • Laraki, G.1    Clerzius, G.2    Daher, A.3    Melendez-Peña, C.4    Daniels, S.5
  • 22
    • 0035012516 scopus 로고    scopus 로고
    • Modular structure of PACT: distinct domains for binding and activating PKR
    • Peters GA, Hartmann R, Qin J, Sen GC, (2001) Modular structure of PACT: distinct domains for binding and activating PKR. Mol Cell Biol 21: 1908-1920.
    • (2001) Mol Cell Biol , vol.21 , pp. 1908-1920
    • Peters, G.A.1    Hartmann, R.2    Qin, J.3    Sen, G.C.4
  • 23
    • 1642346273 scopus 로고    scopus 로고
    • Guideline for the selection of highly effective siRNA sequences for mammalian and chick RNA interference
    • Ui-Tei K, Naito Y, Takahashi F, Haraguchi T, Ohki-Hamazaki H, et al. (2004) Guideline for the selection of highly effective siRNA sequences for mammalian and chick RNA interference. Nucleic Acids Res 32: 936-948.
    • (2004) Nucleic Acids Res , vol.32 , pp. 936-948
    • Ui-Tei, K.1    Naito, Y.2    Takahashi, F.3    Haraguchi, T.4    Ohki-Hamazaki, H.5
  • 25
    • 0027478445 scopus 로고
    • Relatedness of an RNA-binding motif in human immunodeficiency virus type 1 TAR RNA-binding protein TRBP to human P1/dsl kinase and Drosophila staufen
    • Gatignol A, Buckler C, Jeang KT, (1993) Relatedness of an RNA-binding motif in human immunodeficiency virus type 1 TAR RNA-binding protein TRBP to human P1/dsl kinase and Drosophila staufen. Mol Cell Biol 13: 2193-2202.
    • (1993) Mol Cell Biol , vol.13 , pp. 2193-2202
    • Gatignol, A.1    Buckler, C.2    Jeang, K.T.3
  • 26
    • 56249098241 scopus 로고    scopus 로고
    • dsRNA binding properties of RDE-4 and TRBP reflect their distinct roles in RNAi
    • Parker GS, Maity TS, Bass BL, (2008) dsRNA binding properties of RDE-4 and TRBP reflect their distinct roles in RNAi. J Mol Biol 384: 967-979.
    • (2008) J Mol Biol , vol.384 , pp. 967-979
    • Parker, G.S.1    Maity, T.S.2    Bass, B.L.3
  • 27
    • 58149463628 scopus 로고    scopus 로고
    • TRBP control of PACT-induced phosphorylation of protein kinase R is reversed by stress
    • Daher A, Laraki G, Singh M, Melendez-Peña CE, Bannwarth S, et al. (2009) TRBP control of PACT-induced phosphorylation of protein kinase R is reversed by stress. Mol Cell Biol 1: 254-265.
    • (2009) Mol Cell Biol , vol.1 , pp. 254-265
    • Daher, A.1    Laraki, G.2    Singh, M.3    Melendez-Peña, C.E.4    Bannwarth, S.5
  • 28
    • 84868106469 scopus 로고    scopus 로고
    • Dicer partner proteins tune the length of mature miRNAs in flies and mammals
    • Fukunaga R, Han BW, Hung JH, Xu J, Weng Z, et al. (2012) Dicer partner proteins tune the length of mature miRNAs in flies and mammals. Cell 151: 533-546.
    • (2012) Cell , vol.151 , pp. 533-546
    • Fukunaga, R.1    Han, B.W.2    Hung, J.H.3    Xu, J.4    Weng, Z.5
  • 29
    • 84867678226 scopus 로고    scopus 로고
    • TRBP alters human precursor microRNA processing in vitro
    • Lee HY, Doudna JA, (2012) TRBP alters human precursor microRNA processing in vitro. RNA 18: 2012-2019.
    • (2012) RNA , vol.18 , pp. 2012-2019
    • Lee, H.Y.1    Doudna, J.A.2
  • 30
    • 25144474888 scopus 로고    scopus 로고
    • PKR and eIF2alpha: integration of kinase dimerization, activation, and substrate docking
    • Taylor SS, Haste NM, Ghosh G, (2005) PKR and eIF2alpha: integration of kinase dimerization, activation, and substrate docking. Cell 122: 823-825.
    • (2005) Cell , vol.122 , pp. 823-825
    • Taylor, S.S.1    Haste, N.M.2    Ghosh, G.3
  • 31
    • 68249097024 scopus 로고    scopus 로고
    • Biochemical analysis of PKR activation by PACT
    • Peters GA, Dickerman B, Sen GC, (2009) Biochemical analysis of PKR activation by PACT. Biochemistry 48: 7441-7447.
    • (2009) Biochemistry , vol.48 , pp. 7441-7447
    • Peters, G.A.1    Dickerman, B.2    Sen, G.C.3
  • 32
    • 79958158639 scopus 로고    scopus 로고
    • Stress-induced phosphorylation of PACT reduces its interaction with TRBP and leads to PKR activation
    • Singh M, Castillo D, Patel CV, Patel RC, (2011) Stress-induced phosphorylation of PACT reduces its interaction with TRBP and leads to PKR activation. Biochemistry 50: 4550-4560.
    • (2011) Biochemistry , vol.50 , pp. 4550-4560
    • Singh, M.1    Castillo, D.2    Patel, C.V.3    Patel, R.C.4
  • 33
    • 70349577785 scopus 로고    scopus 로고
    • Phosphorylation of the human microRNA-generating complex mediates MAPK/Erk signaling
    • Paroo Z, Ye X, Chen S, Liu Q, (2009) Phosphorylation of the human microRNA-generating complex mediates MAPK/Erk signaling. Cell 139: 112-122.
    • (2009) Cell , vol.139 , pp. 112-122
    • Paroo, Z.1    Ye, X.2    Chen, S.3    Liu, Q.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.