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Volumn 63, Issue 1, 2013, Pages 125-140

Potential assessment of genome-wide association study and genomic selection in Japanese pear Pyrus pyrifolia

Author keywords

Black spot resistance; Genome wide association study (GWAS); Genomic selection (GS); Harvest time; Japanese pear; Ordinal categorical traits

Indexed keywords

PYRUS; PYRUS PYRIFOLIA; PYRUS PYRIFOLIA VAR. CULTA;

EID: 84876942008     PISSN: 13447610     EISSN: 13473735     Source Type: Journal    
DOI: 10.1270/jsbbs.63.125     Document Type: Article
Times cited : (62)

References (61)
  • 1
    • 77954685941 scopus 로고    scopus 로고
    • Genetic variation, population structure and linkage disequilibrium in peach commercial varieties
    • Aranzana, M.J., E.K. Abbassi, W. Howard and P. Arús (2010) Genetic variation, population structure and linkage disequilibrium in peach commercial varieties. BMC Genetics 11: 69.
    • (2010) BMC Genetics , vol.11 , pp. 69
    • Aranzana, M.J.1    Abbassi, E.K.2    Howard, W.3    Arús, P.4
  • 3
    • 0000386502 scopus 로고
    • Pears (Pyrus)
    • International Society for Horticultural Science, Wageningen, The Netherlands
    • Bell, R.L. (1990) Pears (Pyrus). In: Moore, J.N. and J.R. Ballington Jr. (eds.) Genetic Resources of Temperate Fruit and Nut Crops I, International Society for Horticultural Science, Wageningen, The Netherlands, pp. 55-697.
    • (1990) Genetic Resources of Temperate Fruit and Nut Crops , vol.1 , pp. 55-697
    • Bell, R.L.1
  • 5
    • 0035077825 scopus 로고    scopus 로고
    • Reconsideration of S-genotype assignments and discovery of a new allele based on S-RNase PCR-RFLP in Japanese pear cultivars
    • Castillo, C., T. Takasaki, T. Saito, Y. Yoshimura, S. Norioka and T. Nakanishi (2001) Reconsideration of S-genotype assignments and discovery of a new allele based on S-RNase PCR-RFLP in Japanese pear cultivars. Breed. Sci. 51: 5-11.
    • (2001) Breed. Sci , vol.51 , pp. 5-11
    • Castillo, C.1    Takasaki, T.2    Saito, T.3    Yoshimura, Y.4    Norioka, S.5    Nakanishi, T.6
  • 6
    • 57349112000 scopus 로고    scopus 로고
    • Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences
    • Celton, J.M., D.S. Tustin, D. Chagné and S.E. Gardiner (2009a) Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences. Tree Genet. Genomes 5: 93-107.
    • (2009) Tree Genet. Genomes , vol.5 , pp. 93-107
    • Celton, J.M.1    Tustin, D.S.2    Chagné, D.3    Gardiner, S.E.4
  • 8
    • 0028151261 scopus 로고
    • Empirical threshold values for quantitative trait mapping
    • Churchill, G.A. and R.W. Doerge (1994) Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
    • (1994) Genetics , vol.138 , pp. 963-971
    • Churchill, G.A.1    Doerge, R.W.2
  • 10
    • 33751325693 scopus 로고    scopus 로고
    • Isolation and characterization of polymorphic microsatellite markers from European pear (Pyrus communis L.)
    • Fernandez-Fernandez, F., N.G. Harvey and C.M. James (2006) Isolation and characterization of polymorphic microsatellite markers from European pear (Pyrus communis L.). Mol. Ecol. Notes 6: 1039-1041.
    • (2006) Mol. Ecol. Notes , vol.6 , pp. 1039-1041
    • Fernandez-Fernandez, F.1    Harvey, N.G.2    James, C.M.3
  • 11
    • 84893179575 scopus 로고
    • Variable selection via Gibbs sampling
    • George, E.I. and R.E. McCulloch (1993) Variable selection via Gibbs sampling. J. Am. Stat. Assoc. 88: 881-889.
    • (1993) J. Am. Stat. Assoc , vol.88 , pp. 881-889
    • George, E.I.1    McCulloch, R.E.2
  • 12
  • 14
    • 17844404294 scopus 로고    scopus 로고
    • Linkage disequilibrium and association studies in higher plants: Present status and future prospects
    • Gupta, P.K., S. Rustgi and P.L. Kulwal (2005) Linkage disequilibrium and association studies in higher plants: present status and future prospects. Plant Mol. Biol. 57: 461-485.
    • (2005) Plant Mol. Biol , vol.57 , pp. 461-485
    • Gupta, P.K.1    Rustgi, S.2    Kulwal, P.L.3
  • 15
    • 45549086886 scopus 로고    scopus 로고
    • Array-based highthroughput DNA markers for crop improvement
    • Gupta, P.K., S. Rustgi and R.R. Mir (2008) Array-based highthroughput DNA markers for crop improvement. Heredity 101: 5-18.
    • (2008) Heredity , vol.101 , pp. 5-18
    • Gupta, P.K.1    Rustgi, S.2    Mir, R.R.3
  • 16
    • 79952102682 scopus 로고    scopus 로고
    • Population genetics of genomics-based crop improvement methods
    • Hamblin, M.T., E.S. Buckler and J.L. Jannink (2011) Population genetics of genomics-based crop improvement methods. Trends Genet. 27: 98-106.
    • (2011) Trends Genet , vol.27 , pp. 98-106
    • Hamblin, M.T.1    Buckler, E.S.2    Jannink, J.L.3
  • 17
    • 59349098163 scopus 로고    scopus 로고
    • Invited review: Genomic selection in dairy cattle: Progress and challenges
    • Hayes, J., P.J. Bowman, A.J. Chamberlain and M.E. Goddard (2009) Invited review: Genomic selection in dairy cattle: Progress and challenges. J. Dairy Sci. 92: 433-443.
    • (2009) J. Dairy Sci , vol.92 , pp. 433-443
    • Hayes, J.1    Bowman, P.J.2    Chamberlain, A.J.3    Goddard, M.E.4
  • 18
  • 19
    • 34248184057 scopus 로고    scopus 로고
    • Isolation and characterization of microsatellite markers in Japanese pear (Pyrus pyrifolia Nakai)
    • Inoue, E., Y. Matsuki, H. Anzai and K. Evans (2007) Isolation and characterization of microsatellite markers in Japanese pear (Pyrus pyrifolia Nakai). Mol. Ecol. Notes 7: 445-447.
    • (2007) Mol. Ecol. Notes , vol.7 , pp. 445-447
    • Inoue, E.1    Matsuki, Y.2    Anzai, H.3    Evans, K.4
  • 21
    • 0037777932 scopus 로고    scopus 로고
    • Rapid identification of 1-aminocyclopropane-1-carboxylate (ACC) synthase genotypes in cultivars of Japanese pear (Pyrus pyrifolia Nakai) using CAPS markers
    • Itai, A., T. Kotaki, K. Tanabe, F. Tamura, D. Kawaguchi and M. Fukuda (2003) Rapid identification of 1-aminocyclopropane-1-carboxylate (ACC) synthase genotypes in cultivars of Japanese pear (Pyrus pyrifolia Nakai) using CAPS markers. Theor. Appl. Genet. 106: 1266-1272.
    • (2003) Theor. Appl. Genet , vol.106 , pp. 1266-1272
    • Itai, A.1    Kotaki, T.2    Tanabe, K.3    Tamura, F.4    Kawaguchi, D.5    Fukuda, M.6
  • 22
    • 34248372860 scopus 로고    scopus 로고
    • Bayesian association mapping of multiple quantitative trait loci and its application to the analysis of genetic variation among Oryza sativa L. germplasms
    • Iwata, H., Y. Uga, Y. Yoshioka, K. Ebana and T. Hayashi (2007) Bayesian association mapping of multiple quantitative trait loci and its application to the analysis of genetic variation among Oryza sativa L. germplasms. Theor. Appl. Genet. 114: 1437-1449.
    • (2007) Theor. Appl. Genet , vol.114 , pp. 1437-1449
    • Iwata, H.1    Uga, Y.2    Yoshioka, Y.3    Ebana, K.4    Hayashi, T.5
  • 23
    • 61649121503 scopus 로고    scopus 로고
    • Bayesian multilocus association mapping on ordinal and censored traits and its application to the analysis of genetic variation among Oryza sativa L. germplasms
    • Iwata, H., K. Ebana, S. Fukuoka, J.L. Jannink and T. Hayashi (2009) Bayesian multilocus association mapping on ordinal and censored traits and its application to the analysis of genetic variation among Oryza sativa L. germplasms. Theor. Appl. Genet. 118: 865-880.
    • (2009) Theor. Appl. Genet , vol.118 , pp. 865-880
    • Iwata, H.1    Ebana, K.2    Fukuoka, S.3    Jannink, J.L.4    Hayashi, T.5
  • 24
    • 77649336717 scopus 로고    scopus 로고
    • Genome-wide association study of grain shape variation among Oryza sativa L. germplasms based on elliptic Fourier analysis
    • Iwata, H., K. Ebana, Y. Uga, T. Hayashi and J.L. Jannink (2010) Genome-wide association study of grain shape variation among Oryza sativa L. germplasms based on elliptic Fourier analysis. Mol. Breed. 25: 203-215.
    • (2010) Mol. Breed , vol.25 , pp. 203-215
    • Iwata, H.1    Ebana, K.2    Uga, Y.3    Hayashi, T.4    Jannink, J.L.5
  • 25
    • 79960569740 scopus 로고    scopus 로고
    • Prospects for genomic selection in conifer breeding: A simulation study of Cryptomeria japonica
    • Iwata, H., T. Hayashi and Y. Tsumura (2011) Prospects for genomic selection in conifer breeding: a simulation study of Cryptomeria japonica. Tree Genet. Genomes 7: 747-758.
    • (2011) Tree Genet. Genomes , vol.7 , pp. 747-758
    • Iwata, H.1    Hayashi, T.2    Tsumura, Y.3
  • 28
    • 84876921596 scopus 로고    scopus 로고
    • Japanese pear
    • National Institute of Agrobiological Resources, Ministry of Agriculture, Forestry and Fisheries of Japan
    • Kotobuki, K. (1999) Japanese pear. In: Nagamine, T. and H. Takeda (eds.) The Descriptors for Characterization and Evaluation in Plant Genetic Resources (Volume 1). National Institute of Agrobiological Resources, Ministry of Agriculture, Forestry and Fisheries of Japan, pp. 340-345.
    • (1999) Descriptors For Characterization and Evaluation In Plant Genetic Resources , vol.1 , pp. 340-345
    • Kotobuki, K.1
  • 31
    • 84856215647 scopus 로고    scopus 로고
    • Towards genomic selection in apple (Malus × domestica Borkh.) breeding programmes: Prospects, challenges and strategies
    • Kumar, S., M.C.A.M. Bink, R.K. Volz, V.G.M. Bus and D. Chagné (2012) Towards genomic selection in apple (Malus × domestica Borkh.) breeding programmes: prospects, challenges and strategies. Tree Genet. Genomes 8: 1-14.
    • (2012) Tree Genet. Genomes , vol.8 , pp. 1-14
    • Kumar, S.1    Bink, M.C.A.M.2    Volz, R.K.3    Bus, V.G.M.4    Chagné, D.5
  • 32
    • 0011373760 scopus 로고    scopus 로고
    • Variable selection for regression models
    • Kuo, L. and B. Mallick (1998) Variable selection for regression models. Sankhya Ser. B 60: 65-81.
    • (1998) Sankhya Ser. B , vol.60 , pp. 65-81
    • Kuo, L.1    Mallick, B.2
  • 34
    • 0028090414 scopus 로고
    • Genetic dissection of complex traits
    • Lander, E.S. and N.J. Schork (1994) Genetic dissection of complex traits. Science 265: 2037-2049.
    • (1994) Science , vol.265 , pp. 2037-2049
    • Lander, E.S.1    Schork, N.J.2
  • 36
    • 0034818752 scopus 로고    scopus 로고
    • Does marker-assisted selection make dollars and sense in a fruit breeding programme?
    • Luby, J.J. and D.V. Show (2001) Does marker-assisted selection make dollars and sense in a fruit breeding programme? Hort. Sci. 36: 872-879.
    • (2001) Hort. Sci , vol.36 , pp. 872-879
    • Luby, J.J.1    Show, D.V.2
  • 37
    • 0035045051 scopus 로고    scopus 로고
    • Prediction of total genetic value using genome-wide dense marker maps
    • Meuwissen, T.H.E., B.J. Hayes and M.E. Goddard (2001) Prediction of total genetic value using genome-wide dense marker maps. Genetics 157: 1819-1829.
    • (2001) Genetics , vol.157 , pp. 1819-1829
    • Meuwissen, T.H.E.1    Hayes, B.J.2    Goddard, M.E.3
  • 39
    • 72449178989 scopus 로고    scopus 로고
    • Development of novel EST-SSR markers derived from Japanese pear (Pyrus pyrifolia)
    • Nishitani, C., S. Terakami, Y. Sawamura, N. Takada and T. Yamamoto (2009) Development of novel EST-SSR markers derived from Japanese pear (Pyrus pyrifolia). Breed. Sci. 59: 391-400.
    • (2009) Breed. Sci , vol.59 , pp. 391-400
    • Nishitani, C.1    Terakami, S.2    Sawamura, Y.3    Takada, N.4    Yamamoto, T.5
  • 41
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard, J.K., M. Stephens and P. Donnelly (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 42
    • 34547099098 scopus 로고    scopus 로고
    • Prospects of association mapping in perennial horticultural crops
    • Springer, New York
    • Rikkerink, E.H.A., N.C. Oraguzie and S.E. Gardiner (2007) Prospects of association mapping in perennial horticultural crops. In: Oraguzie, N.C., E.H.A. Rikkerink, S.E. Gardiner and H.N. De Silva (eds.) Association Mapping in Plants. Springer, New York, pp. 249-269.
    • (2007) Association Mapping In Plants , pp. 249-269
    • Rikkerink, E.H.A.1    Oraguzie, N.C.2    Gardiner, S.E.3
  • 46
    • 20044369371 scopus 로고    scopus 로고
    • Toward genome-wide SNP genotyping
    • Syvänen, A.C. (2005) Toward genome-wide SNP genotyping. Nat. Genet. 37: S5-S10.
    • (2005) Nat. Genet , vol.37
    • Syvänen, A.C.1
  • 52
    • 84944178665 scopus 로고
    • Hierarchical groupings to optimize an objective function
    • Ward, J.H. (1963) Hierarchical groupings to optimize an objective function. J. Am. Stat. Assoc. 58: 236-244.
    • (1963) J. Am. Stat. Assoc , vol.58 , pp. 236-244
    • Ward, J.H.1
  • 53
    • 34547095019 scopus 로고    scopus 로고
    • Gene-assisted selection: Applications of association genetics for forest tree breeding
    • Springer, New York
    • Wilcox, P.L., C.E. Echt and R.D. Burdon (2007) Gene-assisted selection: applications of association genetics for forest tree breeding. In: Oraguzie, N.C., E.H.A. Rikkerink, S.E. Gardiner and H.N. De Silva (eds.) Association Mapping in Plants, Springer, New York, pp. 211-247.
    • (2007) Association Mapping In Plants , pp. 211-247
    • Wilcox, P.L.1    Echt, C.E.2    Burdon, R.D.3
  • 56
    • 0036215804 scopus 로고    scopus 로고
    • Development of microsatellite markers in Japanese pear (Pyrus pyrifolia Nakai)
    • Yamamoto, T., T. Kimura, M. Shoda, Y. Ban, T. Hayashi and N. Matsuta (2002c) Development of microsatellite markers in Japanese pear (Pyrus pyrifolia Nakai). Mol. Ecol. Notes 2: 14-16.
    • (2002) Mol. Ecol. Notes , vol.2 , pp. 14-16
    • Yamamoto, T.1    Kimura, T.2    Shoda, M.3    Ban, Y.4    Hayashi, T.5    Matsuta, N.6
  • 57
    • 33745158931 scopus 로고    scopus 로고
    • DNA profiling of fresh and processed fruits in pear
    • Yamamoto, T., T. Kimura, T. Hayashi and Y. Ban (2006) DNA profiling of fresh and processed fruits in pear. Breed. Sci. 56: 165-171.
    • (2006) Breed. Sci , vol.56 , pp. 165-171
    • Yamamoto, T.1    Kimura, T.2    Hayashi, T.3    Ban, Y.4
  • 59
    • 0037297614 scopus 로고    scopus 로고
    • Estimating polygenic effects using markers of the entire genome
    • Xu, S. (2003) Estimating polygenic effects using markers of the entire genome. Genetics 163: 789-801.
    • (2003) Genetics , vol.163 , pp. 789-801
    • Xu, S.1
  • 60
    • 33744980661 scopus 로고    scopus 로고
    • Genetic association mapping and genome organization of maize
    • Yu, J. and E.S. Buckler (2006) Genetic association mapping and genome organization of maize. Curr. Opin. Biotechnol. 17: 155-160.
    • (2006) Curr. Opin. Biotechnol , vol.17 , pp. 155-160
    • Yu, J.1    Buckler, E.S.2


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