Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.)

Molecular Breeding

Volumn 10, Issue 4, 2002, Pages 217-241

  Liebhard, R ^a   Gianfranceschi, L ^a   Koller, B ^a   Ryder, C D ^a   Tarchini, R ^a   Van De Weg, E ^a   Gessler, C ^a  

^a NONE   (Netherlands)

Author keywords

Mapping; Molecular marker; Simple sequence repeat; SSR

Indexed keywords

BIOMARKERS; CONSERVATION; DNA SEQUENCES; FRUITS; GENES; MOLECULAR ORIENTATION;

GENETIC LINKAGE MAPS; GENETIC MARKERS; HIGH QUALITY; LINKAGE GROUPS; MALUS XDOMESTICA; MICROSATELLITES; MOLECULAR MARKER; SIMPLE SEQUENCE REPEATS; SIMPLE SEQUENCE-REPEAT MARKERS;

MAPPING;

AMYGDALOIDEAE; EMBRYOPHYTA; MALOIDEAE; MALUS; MALUS DOMESTICA; MALUS X DOMESTICA; ROSACEAE; TRANSPOSONS;

EID: 0036411007     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1020525906332     Document Type: Article

References (38)

1. Chevreau E., Lespinasse Y. and Gallet M. 1985. Inheritance of pollen enzyme and polyploid origin of apple (Malus x domestica Borkh.). Theor. Appl. Genet. 71: 268-277.
2. Conner J.P., Brown S.K. and Weeden N.F. 1997. Randomly amplified polymorphic DNA-based genetic linkage maps of three apple cultivars. J. Amer. Soc. Hort. Sci. 122: 350-359.
3. Darlington C.D. 1963. Chromosome Botany and the Origins of Cultivated Plants. 2nd Edn. George, Allen and Unwin, London.
4. Gardiner S.E., Basset H.C.M, Noiton D.A.M., Bus V.G., Hofstee M.E., White A.G. et al. 1996. A detailed linkage map around an apple scab resistance gene demonstrates that tow disease resistance classes both carry the Vf gene. Theor. Appl. Genet. 93: 485-493.
5. Gianfranceschi L., Seglias N., Tarchini R., Komjanc M. and Gessler C. 1998. Simple sequence repeats for the genetic analysis of apple. Theor. Appl. Genet. 96: 1069-1076.
6. Guilford P., Prakash S., Zhu J.M., Rikkerink E., Gardiner S., Bassett H. et al. 1997. Microsatellites in Malus x domestica (apple): Abundance, polymorphism, and cultivar identification. Theor. Appl. Genet. 94: 249-254.
7. Hemmat M., Weeden N.F., Connor P.J. and Brown S.K. 1997. A DNA marker for columnar growth habit in apple contains a simple sequence repeat. J. Amer. Soc. Hort. Sci. 122: 347-349.
8. Hemmat M., Weeden N.F., Manganaris A.G. and Lawson D.M. 1994. Molecular marker linkage map for apple. J. Hered. 85: 4-11.
9. Hokanson S.C., Szewc-McFadden A.K., Lamboy W.F. and McFerson J.R. 1998. Microsatellite (SSR) markers reveal genetic identities, genetic diversity and relationships in a Malus x domestica Borkh. core subset collection. Theor. Appl. Genet. 97: 671-683.
10. Jones C.J., Edwards K.J., Castaglione S., Winfield M.O., Sala F., van de Wiel C. et al. 1997. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Mol. Breed. 3: 381-390.
11. Joobeur T., Viruel M.A., deVicente M.C., Jauregui B., Ballester J., Dettori M.T. et al. 1998. Construction of a saturated linkage map of Prunus using an almondxpeach F2 progeny. Theor. Appl. Genet. 97: 1034-1041.
12. Juniper B.E., Watkins R. and Harris S.A. 1999. The origin of apple. Acta. Hort. 484: 27-33.
13. Kellerhals M., Dolega E., Gessler C., Koller B., Lespinasse Y., Parisi L. et al. 1999. EU-Projekt: Dauerhafte Apfel-Resistenz in Europa (DARE). Schweizerische Zeitschrift für Obst- und Weinbau 17: 421-424.
14. Koller B., Gianfranceschi L., Seglias N., McDermott J. and Gessler C. 1994. DNA markers linked to the Malus floribunda 821 scab resistance. Plant Mol. Biol. 26: 597-602.
15. Koller B., Tenzer I. and Gessler C. 2000. SSR analysis of apple scab lesions. Integrated control of pome fruit diseases. IOBC/WPRS Bulletin 23: 93-98.
16. Lander E.S. and Botstein D. 1988. Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121: 183-199.
17. Lespinasse Y., Durel C.E., Parisi L., Laurens F., Chevalier M. and Pinet C. 2000. A European project: D.A.R.E. - Durable apple resistance in Europe. Acta Hort. 538: 197-200.
18. Liebhard R. and Gessler C. 2000. Possible errors in genome mapping. Integrated control of pome fruit diseases. IOBC/WPRS Bulletin 23: 127-135.
19. Maliepaard C., Alston F.H., Van Arkel G., Brown L.M., Chevreau E., Dunemann F. et al. 1998. Aligning male and female linkage maps of apple (Malus pumila Mill.) using multi-allelic markers. Theor. Appl. Genet. 97: 60-73.
20. Michelmore R.W., Paran I. and Kesseli R.V. 1991. Identification of markers linked to disease-resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl. Acad. Sci. USA 88: 9828-9832.
21. Nei M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70: 3321-3323.
22. Paterson A.H., Lander E.S., Hewitt J.D., Peterson S., Lincoln S.E. and Tanksley S.D. 1988. Resolution of quantitative traits into mendelian factors by using a complete linkage map of restriction fragment length polymorphisms. Nature 355: 721-726.
23. Patocchi A., Gianfranceschi L. and Gessler C. 1999. Towards the map-based cloning of Vf: Fine and physical mapping of the Vf-region. Theor. Appl. Genet. 99: 1012-1017.
24. Pejic I., Ajmone-Marsan P., Morgante M., Kozumplick V., Castiglioni P., Taramino G. et al. 1998. Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs and AFLPs. Theor. Appl. Genet. 97: 1248-1255.
25. Phipps J.B., Weeden N.F. and Dickson E.E. 1991. Isozyme evidence for the naturalness of Mespilus L. (Rosaceae, subfam. Maloideae). Systematic Botany 16: 546-552.
26. Rafalski J.A., Morgante M., Vogel J.M., Powell W. and Tingey S.V. 1995. Generating and using DNA markers in plants. In: Birren B. and Lai E. (eds), Non-mammalian genome analysis: A practical guide. Academic Press, London, NewYork, pp. 75-134.
27. Saliba-Colombani V., Causse M., Gervais L. and Philouze J. 2000. Efficiency of RFLP, RAPD, and AFLP markers for the construction of an intraspecific map of the tomato genome. Genome 43: 29-40.
28. Seglias N.P. and Gessler C. 1997. Genetics of apple powdery mildew resistance from Malus zumi (Pl2). Integrated control of pome fruit diseases. IOBC/WPRS Bulletin 20: 195-208.
29. Smeets H.J.M., Brunner H.G., Ropers H.-H. and Wieringa B. 1989. Use of variable simple sequence motifs as genetic markers: Application to study of myotonic dystrophy. Hum. Genet. 83: 245-251.
30. Stam P. and Van Ooijen J.W. 1995. JoinMap® Version 2.0: Software for the Calculation of Genetic Linkage Maps. Plant Research International, Wageningen, The Netherlands.
31. Stebbins G. 1950. Polyploidy and the origin of higher categories. In: Variation and Evolution in Plants. Columbia University Press, New York, pp. 359-362.
32. Tartarini S., Gianfranceschi L., Sansavini S. and Gessler C. 1999. Development of reliable PCR markers for the selection of the Vf gene conferring scab resistance in apple. Plant Breed 118: 183-186.
33. Voorrips R.E. 2001. MapChart version 2.0: Windows Software for the Graphical Presentation of Linkage Maps and QTLs. Plant Research International, Wageningen, The Netherlands.
34. Vos P., Hogers R., Bleeker M., Reijans M., van de Lee T., Hornes M. et al. 1995. AFLP: A new technique for DNA fingerprinting. Nucleic Acids Research 23: 4407-4414.
35. Weber J.L. and May P.E. 1989. Abundant class of human DNA polymorphism which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 44: 388-396.
36. Xu M.L. and Korban S.S. 2000. Saturation mapping of the apple scab resistance gene Vf using AFLP markers. Theor. Appl. Genet. 101: 844-851.
37. Yamamoto T., Kimura T., Sawamura Y., Kotobuki K., Ban Y., Hayashi T. et al. 2001. SSRs isolated from apple can identify polymorphism and genetic diversity in pear. Theor. Appl. Genet. 102: 865-870.
38. Zhou Z.Q. and Li Y.N. 2000. The RAPD evidence for the phylogenetic relationship of the closely related species of cultivated apple. Genectic Resources and Crop Evolution 47: 353-357.