Genetic mapping of genes for susceptibility to black spot disease in Japanese pears

Genome

Volumn 50, Issue 8, 2007, Pages 735-741

  Terakami, S ^a,b   Adachi, Y ^b,c   Iketani, H ^a,b   Sato, Y ^b   Sawamura, Y ^b   Takada, N ^b   Nishitani, C ^b   Yamamoto, T ^a,b  

^a UNIVERSITY OF TSUKUBA   (Japan)

^b NATIONAL INSTITUTE OF FRUIT TREE SCIENCE   (Japan)

^c NATIONAL AGRICULTURAL RESEARCH CENTER FOR TOHOKU REGION   (Japan)

Author keywords

Alternaria alternata; Genetic mapping; Pyrus pyrifolia

Indexed keywords

MICROSATELLITE DNA; PLANT DNA;

ALTERNARIA; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; CHROMOSOME MAP; GENE; GENETIC LINKAGE; GENETIC MARKER; GENETIC PREDISPOSITION; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; PATHOGENICITY; PEAR; PLANT CHROMOSOME; PLANT DISEASE; RANDOM AMPLIFIED POLYMORPHIC DNA;

ALTERNARIA; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; DNA, PLANT; GENES, PLANT; GENETIC MARKERS; GENETIC PREDISPOSITION TO DISEASE; LINKAGE (GENETICS); MICROSATELLITE REPEATS; PLANT DISEASES; PYRUS; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE;

ALTERNARIA ALTERNATA; OSA; PYRUS; PYRUS PYRIFOLIA; PYRUS PYRIFOLIA VAR. CULTA;

EID: 35648972686     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G07-053     Document Type: Article

References (42)

1. Banno, K., Ishikawa, H., Hamauzu, Y., and Tabira, H. 1999. Identification of a RAPD marker linked to the susceptible gene of black spot disease in Japanese pear. J. Jpn. Soc. Hortic. Sci. 68: 476-481.
2. Bell, R.L. 1990. Pears (Pyrus). In Genetic resources of temperate fruit and nut crops. I. Edited by J.N. Moore and J.R. Ballington, Jr. International Society for Horticultural Science, Wageningen, Netherlands, pp. 655-697.
3. Bell, R.L., Quamme, H.A., Layne, R.E.C., and Skirvin, R.M. 1996. Pears. In Fruit breeding, Vol. I. Tree and tropical fruits. Edited by J. Janick and J.N. Moore. John Wiley & Sons Inc. pp. 441-514.
4. Calenge, F., Drouet, D., Denance, C., Van de Weg, W.E., Brisset, M.N., Paulin, J.P., and Durel, C.E. 2005. Identification of a major QTL together with several minor additive or epistatic QTLs for resistance to fire blight in apple in two related progenies. Theor. Appl. Genet. 111: 128-135. doi:10.1007/s00122-005-2002-z.
5. Erdin, S., Tartarini, S., Broggini, G.A.L., Gennari, F., Sansavini, S., Gessler, C., and Patocchi, A. 2006. Mapping of the apple scabresistance gene Vb. Genome, 48: 630-636.
6. Gessler, C., Patocchi, A., Sansavini, S., Tartarini, S., and Gianfranceschi, L. 2006. Venturia inaequalis resistance in apple. Crit. Rev. Plant Sci. 25: 473-503. doi:10.1080/07352680601015975.
7. Grattapaglia, D., and Sederoff, R. 1994. Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudotestcross: mapping strategy and RAPD markers. Genetics, 137: 1121-1137.
8. Hayashi, N., Tanabe, K., Tsuge, T., Nishimura, S., Kohmoto, K., and Otani, H. 1990. Determination of host-selective toxin production during spore germination of Alternaria alternata by high-performance liquid chromatography. Phytopathology, 80: 1088-1091.
9. Iketani, H., Abe, K., Yamamoto, T., Kotobuki, K., Sato, Y., Saito, T., et al. 2001. Mapping of disease-related genes in Japanese pear using a molecular linkage map with RAPD markers. Breed. Sci. 51: 179-184. doi:10.1270/jsbbs.51.179.
10. James, C.M., Clarke, J.B., and Evans, K.M. 2004. Identification of molecular markers linked to the mildew resistance gene Pl-d in apple. Theor. Appl. Genet. 110: 175-181. doi:10.1007/s00122-004-1836-0.
11. Jones, C.J., Edwards, K.J., Castaglione, S., Winfield, M.O., Sala, F., van de Wiel, C., et al. 1997. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Mol. Breed. 3: 381-390. doi:10.1023/A:1009612517139.
12. Kajiura, I., and Sato, Y. 1990. Recent progress in Japanese pear (Pyrus pyrifolia Nakai) breeding and descriptions of cultivars based on literature review. Bull. Fruit Tree Res. Stn. Extra No. 1: 1-329. [In Japanese.]
13. Kosambi, D.D. 1944. The estimation of map distances from recombination values. Ann. Eugen. 12: 172-175.
14. Kovanda, M. 1965. On the generic concepts in the Maloideae. Preslia, 37: 27-34.
15. Kozaki, I. 1973. Black spot disease resistance in Japanese pear. I. Heredity of the disease resistance. Bull. Hortic. Res. Stn. (Minist. Agric. For.) Ser. A, 12: 17-27. [In Japanese with English summary.]
16. Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Van de Weg, W.E., and Gessler, C. 2002. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.). Mol. Breed. 10: 217-241. doi:10.1023/A:1020525906332.
17. Liebhard, R., Koller, B., Gianfranceschi, L., and Gessler, C. 2003. Creating a saturated reference map for the apple (Malus x domestica Borkh.) genome. Theor. Appl. Genet. 106: 1497-1508.
18. Maliepaard, C., Alston, F.H., van Arkel, G., Brown, L.M., Chevreau, E.. Dunemann, F., et al. 1998. Aligning male and female linkage maps of apple (Malus pumila Mill.). Theor. Appl. Genet. 97: 60-73. doi:10.1007/s001220050867.
19. Michelmore, R.W., Paran, I., and Kesseli, R.V. 1991. Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl. Acad. Sci. U.S.A. 88: 9828-9832. doi:10.1073/pnas.88.21.9828.
20. Nakashima, T., Ueno, T., Fukami, H., Taga, T., Masuda, H., Osaki, K., et al. 1985. Isolation and structures of AK-toxin I and II, host-specific phytotoxic metabolites produced by Alternaria alternata Japanese pear pathotype. Agric. Biol. Chem. 49: 807-815.
21. Otani, H., Kohmoto, K., Nishimura, S., Nakashima, T., Ueno, T., and Fukami, H. 1985. Biological activities of AK-toxins I and II, host specific toxins from Alternaria alternata Japanese pear pathotype. Ann. Phytopathol. Soc. Jpn. 51: 285-293.
22. Patocchi, A., and Gessler, C. 2003. Genome scanning approach (GSA), a fast method for finding molecular markers associated to any trait. Poster 178. In Abstracts of the Plant and Animal Genome XI Conference, San Diego, Calif., 11-15 January 2003. Available from http://www.intl-pag.org/11/abstracts/ P3b_P178_XI.html [accessed 19 July 2007].
23. 2: a new apple scab resistance gene. Theor. Appl. Genet. 109: 1087-1092. doi:10.1007/s00122-004-1723-8.
24. Patocchi, A., Walser, M., Tartarini, S., Broggini, G.A., Gennari, F., Sansavini, S., and Gessler, C. 2005. Identification by genome scanning approach (GSA) of a microsatellite tightly associated with the apple scab resistance gene Vm. Genome, 48: 630-636. doi:10.1139/g05-036.
25. Powell, W., Machray, G.C., and Provan, J. 1996. Polymorphism revealed by simple sequence repeats. Trends Plant Sci. 1: 215-222.
26. Sawamura, Y., Saito, T., Takada, N., Yamamoto, T., Kimura, T., Hayashi, T., and Kotobuki, K. 2004. Identification of parentage of Japanese pear 'Housui'. J. Jpn. Soc. Hortic. Sci. 73: 511-518.
27. Sax, K. 1931. The origin and relationships of the Pomoideae. J. Arn. Arbor. Harv. Univ. 12: 3-22.
28. Silfverberg-Dilworth, E., Matasci, C.L., Van de Weg, W.E., Van Kaauwen, M.P.W., Walser, M., Kodde, L.P., et al. 2006. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genet. Genomes, 2: 202-224. doi:10. 1007/s11295-006-0045-1.
29. Tanaka, S. 1933. Studies on black spot disease of Japanese pear (Pyrus serotina Rehd.). Mem. Coll. Agric. Kyoto Univ. 28: 1-31.
30. Tartarini, S., and Sansavini, S. 2003. The use of molecular markers in pome fruit breeding. Acta Hortic. 622: 129-140.
31. Terakami, S., Shoda, M., Adachi, Y., Gonai, T., Kasumi, M., Sawamura, Y., et al. 2006. Genetic mapping of the pear scab resistance gene Vnk of Japanese pear cultivar Kinchaku. Theor. Appl. Genet. 113: 743-752. doi:10.1007/s00122-006-0344-9.
32. Terakami, S., Adachi, Y., Gonai, T., Sato, Y., Sawamura, Y., Takada, N., Nishitani, C., and Yamamoto, T. 2007. Identification of pear cultivars with the DNA markers linked to disease-related genes. DNA Pol. 15: 93-96.
33. Van Ooijen, J.W., and Voorrips, R.E. 2001. JoinMap 3.0: Software for the calculation of genetic linkage maps. Plant Research International, Wageningen, Netherlands.
34. Vinatzer, B.A., Patocchi, A., Tartarini, S., Gianfranceschi, L., Sansavini, S., and Gessler, C. 2004. Isolation of two microsatellite markers from BAC clones of the Vf scab resistance region and molecular characterization of scab-resistant accessions in Malus germplasms. Plant Breed. 123: 321-326. doi:10.1111/j.1439-0523.2004.00973.x.
35. Voorrips, R.E. 2002. MapChart: software for the graphical presentation of linkage maps and QTLs. J. Hered. 93: 77-78. doi:10. 1093/jhered/93.1.77.
36. Vos, P., Hogers, R., Bleeker, M., Reijans, M., Vandelee, T., Homes, M., et al. 1995. AFLP - a new technique for DNA-fingerprinting. Nucleic Acids Res. 23: 4407-4414. doi:10.1093/nar/23.21.4407.
37. Walton, J.D. 1996. Host-selective toxins: agents of compatibility. Plant Cell, 8: 1723-1733. doi:10.1105/tpc.8.10.1723.
38. Yamamoto, T., Kimura, T., Sawamura, Y., Manabe, T., Kotobuki, K., Hayashi, T., Ban, Y., and Matsuta, N. 2002a. Simple sequence repeats for genetic analysis in pear. Euphytica, 124: 129-137. doi:10.1023/A: 1015677505602.
39. Yamamoto, T., Kimura, T., Shoda, M., Ban, Y., Hayashi, T., and Matsuta, N. 2002b. Development of microsatellite markers in Japanese pear (Pyrus pyrifolia Nakai). Mol. Ecol. Notes, 2: 14-16. doi:10.1046/j.1471-8286.2002.00128.x.
40. Yamamoto, T., Kimura, T., Shoda, M., Imai, T., Saito, T., Sawamura, Y., et al. 2002c. Genetic linkage maps constructed by using an interspecific cross between Japanese and European pears. Theor. Appl. Genet. 106: 9-18.
41. Yamamoto, T., Kimura, T., Saito, T., Kotobuki, K., Matsuta, N., Liebhard, R., et al. 2004. Genetic linkage maps of Japanese and European pears aligned to the apple consensus map. Acta Hortic. 663: 51-56.
42. Yamamoto, T., Kimura, T., Hayashi, T., and Ban, Y. 2006. DNA profiling of fresh and processed fruits in pear. Breed. Sci. 56: 165-171. doi:10.1270/jsbbs.56.165.