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Volumn 11, Issue , 2010, Pages

Genetic variation, population structure and linkage disequilibrium in peach commercial varieties

Author keywords

[No Author keywords available]

Indexed keywords

AGRONOMIC TRAIT; ARTICLE; COMMERCIAL SPECIES; CONTROLLED STUDY; CROP PRODUCTION; CULTIVAR; GENE LINKAGE DISEQUILIBRIUM; GENE MAPPING; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC CONSERVATION; GENETIC DISTANCE; GENETIC VARIABILITY; GENOTYPE; GERMPLASM; NONHUMAN; PEACH; PLANT GENETICS; POPULATION DISTRIBUTION; POPULATION STRUCTURE; SIMPLE SEQUENCE REPEAT; STRUCTURE ANALYSIS; AGRICULTURE; BREEDING; GENETICS; MUTATION; PEDIGREE; PRUNUS;

EID: 77954685941     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-11-69     Document Type: Article
Times cited : (147)

References (45)
  • 1
    • 0001541533 scopus 로고
    • Origin and dissemination of peach
    • Faust M, Timon B. Origin and dissemination of peach. Hortic Rev 1995, 17:331-379.
    • (1995) Hortic Rev , vol.17 , pp. 331-379
    • Faust, M.1    Timon, B.2
  • 2
    • 65349138221 scopus 로고    scopus 로고
    • Prunus avium: nuclear DNA study in wild populations and sweet cherry cultivars
    • 10.1139/G09-007, 19370088
    • Guarino C, Santoro S, De Simone L, Cipriani G. Prunus avium: nuclear DNA study in wild populations and sweet cherry cultivars. Genome 2009, 52:320-337. 10.1139/G09-007, 19370088.
    • (2009) Genome , vol.52 , pp. 320-337
    • Guarino, C.1    Santoro, S.2    De Simone, L.3    Cipriani, G.4
  • 3
    • 29144439232 scopus 로고    scopus 로고
    • SSR allelic variation in almond (Prunus dulcis Mill)
    • 10.1007/s00122-005-0138-5, 16307227
    • Xie H, Sui Y, Chang FQ, Xu Y, Ma RC. SSR allelic variation in almond (Prunus dulcis Mill). Theor Appl Genet 2006, 112:366-372. 10.1007/s00122-005-0138-5, 16307227.
    • (2006) Theor Appl Genet , vol.112 , pp. 366-372
    • Xie, H.1    Sui, Y.2    Chang, F.Q.3    Xu, Y.4    Ma, R.C.5
  • 5
    • 0038047489 scopus 로고    scopus 로고
    • Microsatellite variability in peach [Prunus persica (L.) Batsch]: cultivar identification marker mutation pedigree inferences and population structure
    • Aranzana MJ, Carbó J, Arús P. Microsatellite variability in peach [Prunus persica (L.) Batsch]: cultivar identification marker mutation pedigree inferences and population structure. Theor Appl Genet 2003, 106:1341-1352.
    • (2003) Theor Appl Genet , vol.106 , pp. 1341-1352
    • Aranzana, M.J.1    Carbó, J.2    Arús, P.3
  • 9
    • 0000298657 scopus 로고
    • Inbreeding and coancestry of freestone peach cultivars of the eastern United States and implications for peach germplasm improvement
    • Scorza R, Mehlenbacher SA, Lightner GW. Inbreeding and coancestry of freestone peach cultivars of the eastern United States and implications for peach germplasm improvement. J Amer Soc Hort Sci 1985, 110:547-552.
    • (1985) J Amer Soc Hort Sci , vol.110 , pp. 547-552
    • Scorza, R.1    Mehlenbacher, S.A.2    Lightner, G.W.3
  • 10
    • 32544436413 scopus 로고    scopus 로고
    • Linkage disequilibrium in cultivated grapevine Vitis vinifera L
    • 10.1007/s00122-005-0174-1, 16402190
    • Barnaud A, Lacombe T, Doligez A. Linkage disequilibrium in cultivated grapevine Vitis vinifera L. Theor Appl Genet 2006, 112:708-716. 10.1007/s00122-005-0174-1, 16402190.
    • (2006) Theor Appl Genet , vol.112 , pp. 708-716
    • Barnaud, A.1    Lacombe, T.2    Doligez, A.3
  • 13
    • 0029746175 scopus 로고    scopus 로고
    • Peach mendelian genetics: A short review and new results
    • Monet R, Guye A, Roy M, Dachary N. Peach mendelian genetics: A short review and new results. Agronomie 1996, 16:321-329.
    • (1996) Agronomie , vol.16 , pp. 321-329
    • Monet, R.1    Guye, A.2    Roy, M.3    Dachary, N.4
  • 15
    • 0003566350 scopus 로고    scopus 로고
    • Handbook of Peach and Nectarine Varieties
    • Agricultural Research Service
    • Okie WR. Handbook of Peach and Nectarine Varieties. 1998, Agricultural Research Service.
    • (1998)
    • Okie, W.R.1
  • 18
    • 34248993659 scopus 로고    scopus 로고
    • Power and Precision of Alternate Methods for Linkage Disequilibrium Mapping of Quantitative Trait Loci
    • 10.1534/genetics.106.066480, 1855130, 17277369
    • Zhao HH, Fernando RL, Dekkers JCM. Power and Precision of Alternate Methods for Linkage Disequilibrium Mapping of Quantitative Trait Loci. Genetics 2007, 175:1975-1986. 10.1534/genetics.106.066480, 1855130, 17277369.
    • (2007) Genetics , vol.175 , pp. 1975-1986
    • Zhao, H.H.1    Fernando, R.L.2    Dekkers, J.C.M.3
  • 20
    • 84950245594 scopus 로고    scopus 로고
    • Synteny in the Rosaceae
    • West Sussex: John Wiley and sons, Janick J
    • Arús P, Yamamoto T, Dirlewanger E, Abbott AG. Synteny in the Rosaceae. Plant Breed Rev 2005, 27:175-211. West Sussex: John Wiley and sons, Janick J.
    • (2005) Plant Breed Rev , vol.27 , pp. 175-211
    • Arús, P.1    Yamamoto, T.2    Dirlewanger, E.3    Abbott, A.G.4
  • 21
    • 32544443137 scopus 로고    scopus 로고
    • Mapping With a Few Plants: Using Selective Mapping for Microsatellite Saturation of the Prunus Reference Map
    • 10.1534/genetics.105.043661, 1456826, 16118196
    • Howad W, Yamamoto T, Dirlewanger E, Testolin R, Cosson P, Cipriani G, Monforte AJ, Georgi L, Abbott AG, Arús P. Mapping With a Few Plants: Using Selective Mapping for Microsatellite Saturation of the Prunus Reference Map. Genetics 2005, 171:1305-1309. 10.1534/genetics.105.043661, 1456826, 16118196.
    • (2005) Genetics , vol.171 , pp. 1305-1309
    • Howad, W.1    Yamamoto, T.2    Dirlewanger, E.3    Testolin, R.4    Cosson, P.5    Cipriani, G.6    Monforte, A.J.7    Georgi, L.8    Abbott, A.G.9    Arús, P.10
  • 23
    • 38549148784 scopus 로고    scopus 로고
    • High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology
    • 10.1186/1471-2164-8-424, 2212664, 18021442
    • Lijavetzky D, Cabezas JA, Ibáñez A, Rodríguez V, Martínez-Zapater JM. High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology. BMC Genomics 2007, 8:424. 10.1186/1471-2164-8-424, 2212664, 18021442.
    • (2007) BMC Genomics , vol.8 , pp. 424
    • Lijavetzky, D.1    Cabezas, J.A.2    Ibáñez, A.3    Rodríguez, V.4    Martínez-Zapater, J.M.5
  • 25
    • 23944459339 scopus 로고    scopus 로고
    • Linkage disequilibrium in European elite maize germplasm investigated with SSRs
    • 10.1007/s00122-005-2057-x, 15997389
    • Stich B, Melchinger AE, Frisch M, Maurer HP, Heckenberger M, Reif JC. Linkage disequilibrium in European elite maize germplasm investigated with SSRs. Theor Appl Genet 2005, 111:723-730. 10.1007/s00122-005-2057-x, 15997389.
    • (2005) Theor Appl Genet , vol.111 , pp. 723-730
    • Stich, B.1    Melchinger, A.E.2    Frisch, M.3    Maurer, H.P.4    Heckenberger, M.5    Reif, J.C.6
  • 26
    • 69949135484 scopus 로고    scopus 로고
    • Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design
    • 10.1105/tpc.109.068437, 19654263
    • Myles S, Peiffer J, Brown PJ, Ersoz ES, Zhang ZW, Costich DE, Buckler ES. Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design. Plant Cell 2009, 21:2194-2202. 10.1105/tpc.109.068437, 19654263.
    • (2009) Plant Cell , vol.21 , pp. 2194-2202
    • Myles, S.1    Peiffer, J.2    Brown, P.J.3    Ersoz, E.S.4    Zhang, Z.W.5    Costich, D.E.6    Buckler, E.S.7
  • 27
    • 33746382905 scopus 로고    scopus 로고
    • Genetic diversity and ecogeographical phylogenetic relationships among peach and nectarine cultivars based on simple sequence repeat (SSR) markers
    • Yoon JH, Liu DC, Song WS, Liu WS, Zhang AM, Li SH. Genetic diversity and ecogeographical phylogenetic relationships among peach and nectarine cultivars based on simple sequence repeat (SSR) markers. J Amer Soc Hort Sci 2006, 131:513-521.
    • (2006) J Amer Soc Hort Sci , vol.131 , pp. 513-521
    • Yoon, J.H.1    Liu, D.C.2    Song, W.S.3    Liu, W.S.4    Zhang, A.M.5    Li, S.H.6
  • 28
    • 33644774522 scopus 로고    scopus 로고
    • Extreme Population-Dependent Linkage Disequilibrium Detected in an Inbreeding Plant Species Hordeum vulgare
    • 10.1534/genetics.104.038489, 1456183, 16219791
    • Caldwell KS, Russell J, Langridge P, Powell W. Extreme Population-Dependent Linkage Disequilibrium Detected in an Inbreeding Plant Species Hordeum vulgare. Genetics 2006, 172:557-567. 10.1534/genetics.104.038489, 1456183, 16219791.
    • (2006) Genetics , vol.172 , pp. 557-567
    • Caldwell, K.S.1    Russell, J.2    Langridge, P.3    Powell, W.4
  • 30
    • 0000655270 scopus 로고
    • Genetic distance between populations
    • Nei M. Genetic distance between populations. Amer Naturalist 1972, 106:283-292.
    • (1972) Amer Naturalist , vol.106 , pp. 283-292
    • Nei, M.1
  • 31
    • 0003627815 scopus 로고    scopus 로고
    • NTSYS-PC, Numerical Taxonomy System for the PC ExeterSoftware, Version 2.1
    • Applied Biostatistics Inc Setauket, USA
    • Rohlf FJ. NTSYS-PC, Numerical Taxonomy System for the PC ExeterSoftware, Version 2.1. 2000, Applied Biostatistics Inc Setauket, USA.
    • (2000)
    • Rohlf, F.J.1
  • 32
    • 1642330931 scopus 로고    scopus 로고
    • Linkage Disequilibrium Testing When Linkage Phase Is Unknown
    • 10.1534/genetics.166.1.505, 1470678, 15020439
    • Schaid DJ. Linkage Disequilibrium Testing When Linkage Phase Is Unknown. Genetics 2004, 166(1):505-512. 10.1534/genetics.166.1.505, 1470678, 15020439.
    • (2004) Genetics , vol.166 , Issue.1 , pp. 505-512
    • Schaid, D.J.1
  • 33
    • 0003752712 scopus 로고    scopus 로고
    • Genetic Data Analysis II.Methods for discrete population genetics data
    • Sunderland: Sinauer Associates Inc
    • Weir SB. Genetic Data Analysis II.Methods for discrete population genetics data. 1996, Sunderland: Sinauer Associates Inc.
    • (1996)
    • Weir, S.B.1
  • 35
    • 7444220041 scopus 로고    scopus 로고
    • Bounds and normalization of the composite linkage disequilibrium coefficient
    • 10.1002/gepi.20015, 15389931
    • Zaykin DV. Bounds and normalization of the composite linkage disequilibrium coefficient. Genet Epidemiol 2004, 27:252-257. 10.1002/gepi.20015, 15389931.
    • (2004) Genet Epidemiol , vol.27 , pp. 252-257
    • Zaykin, D.V.1
  • 36
    • 0034118493 scopus 로고    scopus 로고
    • Inference of Population Structure Using Multilocus Genotype Data
    • 1461096, 10835412
    • Pritchard JK, Stephens M, Donnelly P. Inference of Population Structure Using Multilocus Genotype Data. Genetics 2000, 155:945-959. 1461096, 10835412.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 37
    • 0036927474 scopus 로고    scopus 로고
    • Development of microsatellite markers in peach [Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry (Prunus avium L.)
    • 10.1007/s00122-002-0867-7, 12582570
    • Dirlewanger E, Cosson P, Tavaud M, Aranzana MJ, Poizat C, Zanetto A, Arús P, Laigret F. Development of microsatellite markers in peach [Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry (Prunus avium L.). Theor Appl Genet 2002, 105:127-138. 10.1007/s00122-002-0867-7, 12582570.
    • (2002) Theor Appl Genet , vol.105 , pp. 127-138
    • Dirlewanger, E.1    Cosson, P.2    Tavaud, M.3    Aranzana, M.J.4    Poizat, C.5    Zanetto, A.6    Arús, P.7    Laigret, F.8
  • 38
    • 0036228120 scopus 로고    scopus 로고
    • Development and variability analysis of microsatellite markers in peach
    • Aranzana MJ, Garcia-Mas J, Carbo J, Arús P. Development and variability analysis of microsatellite markers in peach. Plant Breed 2002, 121:184-184.
    • (2002) Plant Breed , vol.121 , pp. 184-184
    • Aranzana, M.J.1    Garcia-Mas, J.2    Carbo, J.3    Arús, P.4
  • 39
    • 2542466106 scopus 로고    scopus 로고
    • Simple-sequence repeat (SSR) markers of Japanese plum (Prunus salicina Lindl.) are highly polymorphic and transferable to peach and almond
    • Mnejja M, Garcia-Mas J, Howad W, Badenes ML, Arús P. Simple-sequence repeat (SSR) markers of Japanese plum (Prunus salicina Lindl.) are highly polymorphic and transferable to peach and almond. Molec Ecol Notes 2004, 4:163-166.
    • (2004) Molec Ecol Notes , vol.4 , pp. 163-166
    • Mnejja, M.1    Garcia-Mas, J.2    Howad, W.3    Badenes, M.L.4    Arús, P.5
  • 40
    • 0034070048 scopus 로고    scopus 로고
    • Polymorphic DNA Markers in Black Cherry (Prunus serotina) Are Identified Using Sequences from Sweet Cherry Peach, and Sour Cherry
    • Downey SL, Iezzoni AF. Polymorphic DNA Markers in Black Cherry (Prunus serotina) Are Identified Using Sequences from Sweet Cherry Peach, and Sour Cherry. J Amer Soc Hort Sci 2000, 125:76-80.
    • (2000) J Amer Soc Hort Sci , vol.125 , pp. 76-80
    • Downey, S.L.1    Iezzoni, A.F.2
  • 43
    • 0033843974 scopus 로고    scopus 로고
    • Development of a second generation linkage map for almond using RAPD and SSR markers
    • 10.1139/gen-43-4-649, 10984177
    • Joobeur T, Periam N, de Vicente MC, King GJ, Arús P. Development of a second generation linkage map for almond using RAPD and SSR markers. Genome 2000, 43:649-688. 10.1139/gen-43-4-649, 10984177.
    • (2000) Genome , vol.43 , pp. 649-688
    • Joobeur, T.1    Periam, N.2    de Vicente, M.C.3    King, G.J.4    Arús, P.5
  • 44
    • 0032781515 scopus 로고    scopus 로고
    • AC/GT and AG/CT microsatellite repeats in peach [Prunus persica (L) Batsch]: isolation characterisation and cross-species amplification in Prunus
    • Cipriani G, Lot G, Huang WG, Marrazzo MT, Peterlunger E, Testolin R. AC/GT and AG/CT microsatellite repeats in peach [Prunus persica (L) Batsch]: isolation characterisation and cross-species amplification in Prunus. Theor Appl Genet 1999, 99:65-72.
    • (1999) Theor Appl Genet , vol.99 , pp. 65-72
    • Cipriani, G.1    Lot, G.2    Huang, W.G.3    Marrazzo, M.T.4    Peterlunger, E.5    Testolin, R.6
  • 45
    • 0033859764 scopus 로고    scopus 로고
    • Microsatellite DNA in peach (Prunus persica L. Batsch) and its use in fingerprinting and testing the genetic origin of cultivars
    • 10.1139/gen-43-3-512, 10902716
    • Testolin R, Marrazzo T, Cipriani G, Quarta R, Verde I, Dettori MT, Pancaldi M, Sansavini S. Microsatellite DNA in peach (Prunus persica L. Batsch) and its use in fingerprinting and testing the genetic origin of cultivars. Genome 2000, 43:512-520. 10.1139/gen-43-3-512, 10902716.
    • (2000) Genome , vol.43 , pp. 512-520
    • Testolin, R.1    Marrazzo, T.2    Cipriani, G.3    Quarta, R.4    Verde, I.5    Dettori, M.T.6    Pancaldi, M.7    Sansavini, S.8


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