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Volumn 521, Issue 1, 2013, Pages 166-175

Genetic structure, polymorphism identification of LGP2 gene and their relationship with the resistance/susceptibility to GCRV in grass carp, Ctenopharyngodon idella

Author keywords

Genetic polymorphism; Genomic organization; Grass carp (Ctenopharyngodon idella); Grass carp reovirus; LGP2; Promoter

Indexed keywords

ALLELE; ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; CARP; CONTROLLED STUDY; CTENOPHARYNGODON IDELLA; DNA FLANKING REGION; EXON; GENE; GENE LOCUS; GENETIC SUSCEPTIBILITY; GENETIC VARIABILITY; GENOTYPE; GRASS CARP REOVIRUS; INDEL MUTATION; INTRON; LABORATORY OF GENETICS AND PHYSIOLOGY 2 GENE; MORTALITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; REOVIRUS; REOVIRUS INFECTION; SINGLE NUCLEOTIDE POLYMORPHISM; START CODON; VIRUS RESISTANCE;

EID: 84876703946     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2013.03.016     Document Type: Article
Times cited : (16)

References (45)
  • 1
    • 32144432437 scopus 로고    scopus 로고
    • The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling
    • Arnold K., Bordoli L., Kopp J., Schwede T. The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 2006, 22:195-201.
    • (2006) Bioinformatics , vol.22 , pp. 195-201
    • Arnold, K.1    Bordoli, L.2    Kopp, J.3    Schwede, T.4
  • 2
    • 30744432134 scopus 로고    scopus 로고
    • Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals
    • Chamary J.V., Hurst L.D. Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals. Genome Biol. 2005, 6:R75.
    • (2005) Genome Biol. , vol.6
    • Chamary, J.V.1    Hurst, L.D.2
  • 3
    • 79961178157 scopus 로고    scopus 로고
    • Expression and functional characterization of the RIG-I-like receptors MDA5 and LGP2 in rainbow trout (Oncorhynchus mykiss)
    • Chang M., et al. Expression and functional characterization of the RIG-I-like receptors MDA5 and LGP2 in rainbow trout (Oncorhynchus mykiss). J. Virol. 2011, 85:8403-8412.
    • (2011) J. Virol. , vol.85 , pp. 8403-8412
    • Chang, M.1
  • 5
    • 77953960371 scopus 로고    scopus 로고
    • Polymorphisms in innate immunity genes and risk of childhood leukemia
    • Han S., et al. Polymorphisms in innate immunity genes and risk of childhood leukemia. Hum. Immunol. 2010, 71:727-730.
    • (2010) Hum. Immunol. , vol.71 , pp. 727-730
    • Han, S.1
  • 6
    • 78650683302 scopus 로고    scopus 로고
    • The polymorphism and haplotype of TLR3 gene in grass carp (Ctenopharyngodon idella) and their associations with susceptibility/resistance to grass carp reovirus
    • Heng J., Su J., Huang T., Dong J., Chen L. The polymorphism and haplotype of TLR3 gene in grass carp (Ctenopharyngodon idella) and their associations with susceptibility/resistance to grass carp reovirus. Fish Shellfish Immunol. 2011, 30:45-50.
    • (2011) Fish Shellfish Immunol. , vol.30 , pp. 45-50
    • Heng, J.1    Su, J.2    Huang, T.3    Dong, J.4    Chen, L.5
  • 7
    • 77954952883 scopus 로고    scopus 로고
    • Identification and expression profiling analysis of grass carp Ctenopharyngodon idella LGP2 cDNA
    • Huang T., Su J., Heng J., Dong J., Zhang R., Zhu H. Identification and expression profiling analysis of grass carp Ctenopharyngodon idella LGP2 cDNA. Fish Shellfish Immunol. 2010, 29:349-355.
    • (2010) Fish Shellfish Immunol. , vol.29 , pp. 349-355
    • Huang, T.1    Su, J.2    Heng, J.3    Dong, J.4    Zhang, R.5    Zhu, H.6
  • 8
    • 41149095429 scopus 로고    scopus 로고
    • Spliceosomal introns as tools for genomic and evolutionary analysis
    • Irimia M., Roy S.W. Spliceosomal introns as tools for genomic and evolutionary analysis. Nucleic Acids Res. 2008, 36:1703-1712.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 1703-1712
    • Irimia, M.1    Roy, S.W.2
  • 9
    • 33947586113 scopus 로고    scopus 로고
    • Analysis of the exon-intron structures of fish, amphibian, bird and mammalian hatching enzyme genes, with special reference to the intron loss evolution of hatching enzyme genes in Teleostei
    • Kawaguchi M., Yasumasu S., Hiroi J., Naruse K., Suzuki T., Iuchi I. Analysis of the exon-intron structures of fish, amphibian, bird and mammalian hatching enzyme genes, with special reference to the intron loss evolution of hatching enzyme genes in Teleostei. Gene 2007, 392:77-88.
    • (2007) Gene , vol.392 , pp. 77-88
    • Kawaguchi, M.1    Yasumasu, S.2    Hiroi, J.3    Naruse, K.4    Suzuki, T.5    Iuchi, I.6
  • 10
    • 27144440523 scopus 로고    scopus 로고
    • IPS-1, an adaptor triggering RIG-I- and Mda5-mediated type I interferon induction
    • Kawai T., et al. IPS-1, an adaptor triggering RIG-I- and Mda5-mediated type I interferon induction. Nat. Immunol. 2005, 6:981-988.
    • (2005) Nat. Immunol. , vol.6 , pp. 981-988
    • Kawai, T.1
  • 11
    • 0030862033 scopus 로고    scopus 로고
    • The -308 tumor necrosis factor-α promoter polymorphism effects transcription
    • Kroeger K.M., Carville K.S., Abraham L.J. The -308 tumor necrosis factor-α promoter polymorphism effects transcription. Mol. Immunol. 1997, 34:391-399.
    • (1997) Mol. Immunol. , vol.34 , pp. 391-399
    • Kroeger, K.M.1    Carville, K.S.2    Abraham, L.J.3
  • 12
    • 67650488922 scopus 로고    scopus 로고
    • The polymorphism of lysozyme gene in Zhikong scallop (Chlamys farreri) and its association with susceptibility/resistance to Listonella anguillarum
    • Li L., et al. The polymorphism of lysozyme gene in Zhikong scallop (Chlamys farreri) and its association with susceptibility/resistance to Listonella anguillarum. Fish Shellfish Immunol. 2009, 27:136-142.
    • (2009) Fish Shellfish Immunol. , vol.27 , pp. 136-142
    • Li, L.1
  • 13
    • 77956494220 scopus 로고    scopus 로고
    • Expression patterns and association analysis of the porcine DHX58 gene
    • Li X.Y., et al. Expression patterns and association analysis of the porcine DHX58 gene. Anim. Genet. 2010, 41:537-540.
    • (2010) Anim. Genet. , vol.41 , pp. 537-540
    • Li, X.Y.1
  • 14
    • 84856850841 scopus 로고    scopus 로고
    • Chicken cells sense influenza A virus infection through MDA5 and CARDIF signaling involving LGP2
    • Liniger M., Summerfield A., Zimmer G., McCullough K.C., Ruggli N. Chicken cells sense influenza A virus infection through MDA5 and CARDIF signaling involving LGP2. J. Virol. 2012, 86:705-717.
    • (2012) J. Virol. , vol.86 , pp. 705-717
    • Liniger, M.1    Summerfield, A.2    Zimmer, G.3    McCullough, K.C.4    Ruggli, N.5
  • 15
    • 79956314622 scopus 로고    scopus 로고
    • Immune signaling by RIG-I-like receptors
    • Loo Y.M., Gale M. Immune signaling by RIG-I-like receptors. Immunity 2011, 34:680-692.
    • (2011) Immunity , vol.34 , pp. 680-692
    • Loo, Y.M.1    Gale, M.2
  • 16
    • 77956886654 scopus 로고    scopus 로고
    • C. elegans twist gene expression in differentiated cell types is controlled by autoregulation through intron elements
    • Meyers S.G., Corsi A.K. C. elegans twist gene expression in differentiated cell types is controlled by autoregulation through intron elements. Dev. Biol. 2010, 346:224-236.
    • (2010) Dev. Biol. , vol.346 , pp. 224-236
    • Meyers, S.G.1    Corsi, A.K.2
  • 17
    • 46949102571 scopus 로고    scopus 로고
    • Structure and function of LGP2, a DEX(D/H) helicase that regulates the innate immunity response
    • Murali A., et al. Structure and function of LGP2, a DEX(D/H) helicase that regulates the innate immunity response. J. Biol. Chem. 2008, 283:15825-15833.
    • (2008) J. Biol. Chem. , vol.283 , pp. 15825-15833
    • Murali, A.1
  • 18
    • 33847241832 scopus 로고    scopus 로고
    • Seemingly neutral polymorphic variants may confer immunity to splicing-inactivating mutations: a synonymous SNP in exon 5 of MCAD protects from deleterious mutations in a flanking exonic splicing enhancer
    • Nielsen K.B., et al. Seemingly neutral polymorphic variants may confer immunity to splicing-inactivating mutations: a synonymous SNP in exon 5 of MCAD protects from deleterious mutations in a flanking exonic splicing enhancer. Am. J. Hum. Genet. 2007, 80:416-432.
    • (2007) Am. J. Hum. Genet. , vol.80 , pp. 416-432
    • Nielsen, K.B.1
  • 19
    • 78650674940 scopus 로고    scopus 로고
    • Evolutional conservation of molecular structure and antiviral function of a viral RNA receptor, LGP2, in Japanese flounder, Paralichthys olivaceus
    • Ohtani M., Hikima J., Kondo H., Hirono I., Jung T.S., Aoki T. Evolutional conservation of molecular structure and antiviral function of a viral RNA receptor, LGP2, in Japanese flounder, Paralichthys olivaceus. J. Immunol. 2010, 185:7507-7517.
    • (2010) J. Immunol. , vol.185 , pp. 7507-7517
    • Ohtani, M.1    Hikima, J.2    Kondo, H.3    Hirono, I.4    Jung, T.S.5    Aoki, T.6
  • 20
    • 0042235547 scopus 로고    scopus 로고
    • Heat shock proteins as regulators of the immune response
    • Pockley A.G. Heat shock proteins as regulators of the immune response. Lancet 2003, 362:469-476.
    • (2003) Lancet , vol.362 , pp. 469-476
    • Pockley, A.G.1
  • 21
    • 70449568252 scopus 로고    scopus 로고
    • Study of human RIG-I polymorphisms identifies two variants with an opposite impact on the antiviral immune response
    • Pothlichet J., et al. Study of human RIG-I polymorphisms identifies two variants with an opposite impact on the antiviral immune response. PLoS One 2009, 4:e7582.
    • (2009) PLoS One , vol.4
    • Pothlichet, J.1
  • 22
    • 84861805883 scopus 로고    scopus 로고
    • Single nucleotide polymorphism -799C/T in matrix metalloproteinase-8 promoter region in arterial disease
    • Pradhan-Palikhe P., et al. Single nucleotide polymorphism -799C/T in matrix metalloproteinase-8 promoter region in arterial disease. Innate Immun. 2012, 18:511-517.
    • (2012) Innate Immun. , vol.18 , pp. 511-517
    • Pradhan-Palikhe, P.1
  • 23
    • 45749147426 scopus 로고    scopus 로고
    • Association of a marker in the vitamin D receptor gene with Marek's disease resistance in poultry
    • Praslickova D., et al. Association of a marker in the vitamin D receptor gene with Marek's disease resistance in poultry. Poult. Sci. 2008, 87:1112-1119.
    • (2008) Poult. Sci. , vol.87 , pp. 1112-1119
    • Praslickova, D.1
  • 24
    • 0036008761 scopus 로고    scopus 로고
    • Applications of single nucleotide polymorphisms in crop genetics
    • Rafalski A. Applications of single nucleotide polymorphisms in crop genetics. Curr. Opin. Plant Biol. 2002, 5:94-100.
    • (2002) Curr. Opin. Plant Biol. , vol.5 , pp. 94-100
    • Rafalski, A.1
  • 25
    • 33846307026 scopus 로고    scopus 로고
    • Regulation of innate antiviral defenses through a shared repressor domain in RIG-I and LGP2
    • Saito T., et al. Regulation of innate antiviral defenses through a shared repressor domain in RIG-I and LGP2. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:582-587.
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , pp. 582-587
    • Saito, T.1
  • 26
    • 76549109497 scopus 로고    scopus 로고
    • LGP2 is a positive regulator of RIG-I- and MDA5-mediated antiviral responses
    • Satoh T., et al. LGP2 is a positive regulator of RIG-I- and MDA5-mediated antiviral responses. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:1512-1517.
    • (2010) Proc. Natl. Acad. Sci. U. S. A. , vol.107 , pp. 1512-1517
    • Satoh, T.1
  • 27
    • 0023651307 scopus 로고
    • RNA splice junctions of different classes of eukaryotes sequence statistics and functional implications in gene expression
    • Shapiro M.B., Senapathy P. RNA splice junctions of different classes of eukaryotes sequence statistics and functional implications in gene expression. Nucleic Acids Res. 1987, 15:7155-7174.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 7155-7174
    • Shapiro, M.B.1    Senapathy, P.2
  • 28
    • 0033529188 scopus 로고    scopus 로고
    • Single-nucleotide polymorphisms can cause different structural folds of mRNA
    • Shen L.X., Basilion J.P., Stanton V.P. Single-nucleotide polymorphisms can cause different structural folds of mRNA. Proc. Natl. Acad. Sci. U. S. A. 1999, 96:7871-7876.
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 7871-7876
    • Shen, L.X.1    Basilion, J.P.2    Stanton, V.P.3
  • 29
    • 84862822661 scopus 로고    scopus 로고
    • Genomic organization, promoter characterization and expression analysis of the leukocyte cell-derived chemotaxin-2 gene in Epinephelus akaraa
    • Shi X., Zhang Z., Qu M., Ding S., Zheng L. Genomic organization, promoter characterization and expression analysis of the leukocyte cell-derived chemotaxin-2 gene in Epinephelus akaraa. Fish Shellfish Immunol. 2012, 32:1041-1050.
    • (2012) Fish Shellfish Immunol. , vol.32 , pp. 1041-1050
    • Shi, X.1    Zhang, Z.2    Qu, M.3    Ding, S.4    Zheng, L.5
  • 30
    • 84860388405 scopus 로고    scopus 로고
    • Association of CfLGBP gene polymorphism with disease susceptibility/resistance of Zhikong scallop (Chlamys farreri) to Listonella anguillarum
    • Siva V.S., et al. Association of CfLGBP gene polymorphism with disease susceptibility/resistance of Zhikong scallop (Chlamys farreri) to Listonella anguillarum. Fish Shellfish Immunol. 2012, 32:1117-1123.
    • (2012) Fish Shellfish Immunol. , vol.32 , pp. 1117-1123
    • Siva, V.S.1
  • 31
    • 77955664329 scopus 로고    scopus 로고
    • Novel transcriptional regulatory element in the phenylalanine hydroxylase gene intron 8
    • Stojiljkovic M., et al. Novel transcriptional regulatory element in the phenylalanine hydroxylase gene intron 8. Mol. Genet. Metab. 2010, 101:81-83.
    • (2010) Mol. Genet. Metab. , vol.101 , pp. 81-83
    • Stojiljkovic, M.1
  • 32
    • 80455129865 scopus 로고    scopus 로고
    • Identification, mRNA expression and genomic structure of TLR22 and its association with GCRV susceptibility/resistance in grass carp (Ctenopharyngodon idella)
    • Su J., Heng J., Huang T., Peng L., Yang C., Li Q. Identification, mRNA expression and genomic structure of TLR22 and its association with GCRV susceptibility/resistance in grass carp (Ctenopharyngodon idella). Dev. Comp. Immunol. 2012, 36:450-462.
    • (2012) Dev. Comp. Immunol. , vol.36 , pp. 450-462
    • Su, J.1    Heng, J.2    Huang, T.3    Peng, L.4    Yang, C.5    Li, Q.6
  • 33
    • 80052679212 scopus 로고    scopus 로고
    • Fish MITA serves as a mediator for distinct fish IFN gene activation dependent on IRF3 or IRF7
    • Sun F., Zhang Y., Liu T., Shi J., Wang B., Gui J. Fish MITA serves as a mediator for distinct fish IFN gene activation dependent on IRF3 or IRF7. J. Immunol. 2011, 187:2531-2539.
    • (2011) J. Immunol. , vol.187 , pp. 2531-2539
    • Sun, F.1    Zhang, Y.2    Liu, T.3    Shi, J.4    Wang, B.5    Gui, J.6
  • 34
    • 84865394316 scopus 로고    scopus 로고
    • + T cell survival and fitness
    • + T cell survival and fitness. Immunity 2012, 37:235-248.
    • (2012) Immunity , vol.37 , pp. 235-248
    • Suthar, M.S.1
  • 35
    • 67650510680 scopus 로고    scopus 로고
    • Solution structures of cytosolic RNA sensor MDA5 and LGP2 C-terminal domains: identification of the RNA recognition loop in RIG-I-like receptors
    • Takahasi K., et al. Solution structures of cytosolic RNA sensor MDA5 and LGP2 C-terminal domains: identification of the RNA recognition loop in RIG-I-like receptors. J. Biol. Chem. 2009, 284:17465-17474.
    • (2009) J. Biol. Chem. , vol.284 , pp. 17465-17474
    • Takahasi, K.1
  • 36
    • 34248168157 scopus 로고    scopus 로고
    • Loss of DExD/H box RNA helicase LGP2 manifests disparate antiviral responses
    • Venkataraman T., et al. Loss of DExD/H box RNA helicase LGP2 manifests disparate antiviral responses. J. Immunol. 2007, 178:6444-6455.
    • (2007) J. Immunol. , vol.178 , pp. 6444-6455
    • Venkataraman, T.1
  • 38
    • 84862816237 scopus 로고    scopus 로고
    • Genomic organization, promoter activity of grass carp MDA5 and the association of its polymorphisms with susceptibility/resistance to grass carp reovirus
    • Wang L., Su J., Yang C., Wan Q., Peng L. Genomic organization, promoter activity of grass carp MDA5 and the association of its polymorphisms with susceptibility/resistance to grass carp reovirus. Mol. Immunol. 2012, 50:236-243.
    • (2012) Mol. Immunol. , vol.50 , pp. 236-243
    • Wang, L.1    Su, J.2    Yang, C.3    Wan, Q.4    Peng, L.5
  • 39
    • 0038387796 scopus 로고    scopus 로고
    • The 4830C>A polymorphism within intron 5 affects the pattern of alternative splicing occurring within exon 6 of the thrombopoietin gene
    • Webb K.E., Martin J.F., Cotton J., Erusalimsky J.D., Humphries S.E. The 4830C>A polymorphism within intron 5 affects the pattern of alternative splicing occurring within exon 6 of the thrombopoietin gene. Exp. Hematol. 2003, 31:488-494.
    • (2003) Exp. Hematol. , vol.31 , pp. 488-494
    • Webb, K.E.1    Martin, J.F.2    Cotton, J.3    Erusalimsky, J.D.4    Humphries, S.E.5
  • 40
    • 78649318346 scopus 로고    scopus 로고
    • The fight between the teleost fish immune response and aquatic viruses
    • Workenhe S.T., Rise M.L., Kibenge M.J., Kibenge F.S. The fight between the teleost fish immune response and aquatic viruses. Mol. Immunol. 2010, 47:2525-2536.
    • (2010) Mol. Immunol. , vol.47 , pp. 2525-2536
    • Workenhe, S.T.1    Rise, M.L.2    Kibenge, M.J.3    Kibenge, F.S.4
  • 41
    • 42449139080 scopus 로고    scopus 로고
    • Marker-assisted selection in plant breeding: from publications to practice
    • Xu Y., Crouch J.H. Marker-assisted selection in plant breeding: from publications to practice. Crop. Sci. 2008, 48:391-407.
    • (2008) Crop. Sci. , vol.48 , pp. 391-407
    • Xu, Y.1    Crouch, J.H.2
  • 42
    • 48949094095 scopus 로고    scopus 로고
    • Structural mechanism of RNA recognition by the RIG-I-like receptors
    • Yoneyama M., Fujita T. Structural mechanism of RNA recognition by the RIG-I-like receptors. Immunity 2008, 29:178-181.
    • (2008) Immunity , vol.29 , pp. 178-181
    • Yoneyama, M.1    Fujita, T.2
  • 43
    • 23844438864 scopus 로고    scopus 로고
    • Shared and unique functions of the DExD H-Box helicases RIG-I, MDA5, and LGP2 in antiviral innate immunity
    • Yoneyama M., et al. Shared and unique functions of the DExD H-Box helicases RIG-I, MDA5, and LGP2 in antiviral innate immunity. J. Immunol. 2005, 175:2851-2858.
    • (2005) J. Immunol. , vol.175 , pp. 2851-2858
    • Yoneyama, M.1
  • 44
    • 84863869462 scopus 로고    scopus 로고
    • Investigation on BRCA1 SNPs and its effects on mastitis in Chinese commercial cattle
    • Yuan Z., et al. Investigation on BRCA1 SNPs and its effects on mastitis in Chinese commercial cattle. Gene 2012, 505:190-194.
    • (2012) Gene , vol.505 , pp. 190-194
    • Yuan, Z.1
  • 45
    • 66249094862 scopus 로고    scopus 로고
    • Origin and evolution of the RIG-I like RNA helicase gene family
    • Zou J., Chang M., Nie P., Secombes C.J. Origin and evolution of the RIG-I like RNA helicase gene family. BMC Evol. Biol. 2009, 9:85.
    • (2009) BMC Evol. Biol. , vol.9 , pp. 85
    • Zou, J.1    Chang, M.2    Nie, P.3    Secombes, C.J.4


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