메뉴 건너뛰기




Volumn 2, Issue 4, 2013, Pages 194-202

Photoswitch nucleic acid catalytic activity by regulating topological structure with a universal supraphotoswitch

Author keywords

azobenzene; modified nucleic acid; photoswitch; RNA cleavage; topological structure

Indexed keywords

AZOBENZENE; HAMMERHEAD RIBOZYME; NUCLEIC ACID; NUCLEIC ACID BASE; OLIGOMER; OLIGONUCLEOTIDE; RIBOZYME;

EID: 84876547924     PISSN: None     EISSN: 21615063     Source Type: Journal    
DOI: 10.1021/sb300120n     Document Type: Article
Times cited : (25)

References (52)
  • 1
    • 33746734322 scopus 로고    scopus 로고
    • Biologically active molecules with a "light switch"
    • DOI 10.1002/anie.200600387
    • Mayer, G. and Heckel, A. (2006) Biologically active molecules with a 'light switch' Angew. Chem., Int. Ed. 45, 4900-4921 (Pubitemid 44166118)
    • (2006) Angewandte Chemie - International Edition , vol.45 , Issue.30 , pp. 4900-4921
    • Mayer, G.1    Hechel, A.2
  • 2
    • 70549102321 scopus 로고    scopus 로고
    • Light activation as a method of regulating and studying gene expression
    • Deiters, A. (2009) Light activation as a method of regulating and studying gene expression Curr. Opin. Chem. Biol. 13, 678-686
    • (2009) Curr. Opin. Chem. Biol. , vol.13 , pp. 678-686
    • Deiters, A.1
  • 4
    • 33947504848 scopus 로고    scopus 로고
    • Photochemical control of biological processes
    • DOI 10.1039/b616410m
    • Young, D. D. and Deiters, A. (2007) Photochemical control of biological processes Org. Biomol. Chem. 5, 999-1005 (Pubitemid 46473920)
    • (2007) Organic and Biomolecular Chemistry , vol.5 , Issue.7 , pp. 999-1005
    • Young, D.D.1    Deiters, A.2
  • 5
    • 33846539799 scopus 로고    scopus 로고
    • Regulating gene expression with light-activated oligonucleotides
    • DOI 10.1039/b614349k
    • Tang, X. and Dmochowski, I. J. (2007) Regulating gene expression with light-activated oligonucleotides Mol. BioSyst. 3, 100-110 (Pubitemid 46156879)
    • (2007) Molecular BioSystems , vol.3 , Issue.2 , pp. 100-110
    • Tang, X.1    Dmochowski, I.J.2
  • 6
    • 0035491607 scopus 로고    scopus 로고
    • Conditional control of gene expression in the mouse
    • DOI 10.1038/35093537
    • Lewandoski, M. (2001) Conditional control of gene expression in the mouse Nat. Rev. Genet. 2, 743-755 (Pubitemid 33685572)
    • (2001) Nature Reviews Genetics , vol.2 , Issue.10 , pp. 743-755
    • Lewandoski, M.1
  • 7
    • 0034928842 scopus 로고    scopus 로고
    • Photo-mediated gene activation using caged RNA/DNA in zebrafish embryos
    • DOI 10.1038/ng583
    • Ando, H., Furuta, T., Tsien, R. Y., and Okamoto, H. (2001) Photo-mediated gene activation using caged RNA/DNA in zebrafish embryos Nat. Genet. 28, 317-325 (Pubitemid 32702420)
    • (2001) Nature Genetics , vol.28 , Issue.4 , pp. 317-325
    • Ando, H.1    Furuta, T.2    Tsien, R.Y.3    Okamoto, H.4
  • 13
  • 15
    • 0034644439 scopus 로고    scopus 로고
    • Light-activated gene expression
    • Cruz, F. G., Koh, J. T., and Link, K. H. (2000) Light-activated gene expression J. Am. Chem. Soc. 122, 8777-8778
    • (2000) J. Am. Chem. Soc. , vol.122 , pp. 8777-8778
    • Cruz, F.G.1    Koh, J.T.2    Link, K.H.3
  • 16
    • 16644377512 scopus 로고    scopus 로고
    • Photo-mediated gene activation by using caged mRNA in zebrafish embryos
    • Ando, H., Furuta, T., and Okamoto, H. (2004) Photo-mediated gene activation by using caged mRNA in zebrafish embryos Methods Cell. Biol. 77, 159-171
    • (2004) Methods Cell. Biol. , vol.77 , pp. 159-171
    • Ando, H.1    Furuta, T.2    Okamoto, H.3
  • 17
    • 49349090195 scopus 로고    scopus 로고
    • Light activation of transcription: Photocaging of nucleotides for control over RNA polymerization
    • Pinheiro, A. V., Baptista, P., and Lima, J. C. (2008) Light activation of transcription: photocaging of nucleotides for control over RNA polymerization Nucleic Acids Res. 36, e90
    • (2008) Nucleic Acids Res. , vol.36 , pp. 90
    • Pinheiro, A.V.1    Baptista, P.2    Lima, J.C.3
  • 19
    • 67349270534 scopus 로고    scopus 로고
    • Structure-activity relationships of a caged thrombin binding DNA aptamer: Insight gained from molecular dynamics simulation studies
    • Jayapal, P., Mayer, G., Heckel, A., and Wennmohs, F. (2009) Structure-activity relationships of a caged thrombin binding DNA aptamer: Insight gained from molecular dynamics simulation studies J. Struct. Biol. 166, 241-250
    • (2009) J. Struct. Biol. , vol.166 , pp. 241-250
    • Jayapal, P.1    Mayer, G.2    Heckel, A.3    Wennmohs, F.4
  • 20
    • 36248965157 scopus 로고    scopus 로고
    • Light-dependent RNA interference with nucleobase-caged siRNAs
    • DOI 10.1261/rna.753407
    • Mikat, V. and Heckel, A. (2007) Light-dependent RNA interference with nucleobase-caged siRNAs RNA 13, 2341-2347 (Pubitemid 350127573)
    • (2007) RNA , vol.13 , Issue.12 , pp. 2341-2347
    • Mikat, V.1    Heckel, A.2
  • 21
    • 12444263290 scopus 로고    scopus 로고
    • Light regulation of aptamer activity: An anti-thrombin aptamer with caged thymidine nucleobases
    • DOI 10.1021/ja043285e
    • Heckel, A. and Mayer, G. (2005) Light regulation of aptamer activity: An anti-thrombin aptamer with caged thymidine nucleobases J. Am. Chem. Soc. 127, 822-823 (Pubitemid 40144269)
    • (2005) Journal of the American Chemical Society , vol.127 , Issue.3 , pp. 822-823
    • Heckel, A.1    Mayer, G.2
  • 22
    • 0036009333 scopus 로고    scopus 로고
    • Using an azobenzene cross-linker to either increase or decrease peptide helix content upon Trans-to-cis photoisomerization
    • DOI 10.1016/S1074-5521(02)00109-6, PII S1074552102001096
    • Flint, D. G., Kumita, J. R., Smart, O. S., and Woolley, G. A. (2002) Using an azobenzene cross-linker to either increase or decrease peptide helix content upon trans-to-cis photoisomerization Chem. Biol. 9, 391-397 (Pubitemid 34253422)
    • (2002) Chemistry and Biology , vol.9 , Issue.3 , pp. 391-397
    • Flint, D.G.1    Kumita, J.R.2    Smart, O.S.3    Woolley, G.A.4
  • 23
    • 0030668155 scopus 로고    scopus 로고
    • Site-specific incorporation of photoisomerizable azobenzene groups into ribonuclease S
    • DOI 10.1016/S0960-894X(97)10044-0, PII S0960894X97100440
    • Liu, D., Karanicolas, J., Yu, C., Zhang, Z., and Woolley, G. A. (1997) Site-specific incorporation of photoisomerizable azobenzene groups into ribonuclease S Bioorg. Med. Chem. Lett. 7, 2677-2680 (Pubitemid 27455640)
    • (1997) Bioorganic and Medicinal Chemistry Letters , vol.7 , Issue.20 , pp. 2677-2680
    • Liu, D.1    Karanicolas, J.2    Yu, C.3    Zhang, Z.4    Woolley, G.A.5
  • 24
    • 0033578647 scopus 로고    scopus 로고
    • Photomodulation of the conformation of cyclic peptides with azobenzene moieties in the peptide backbone
    • DOI 10.1002/(SICI)1521-3773(19990917)38:18<2771::AID-ANIE2771>3.0. CO;2-W
    • Behrendt, R., Renner, C., Schenk, M., Wang, F., Wachtveitl, J., Oesterhelt, D., and Moroder, L. (1999) Photomodulation of the conformation of cyclic peptides with azobenzene moieties in the peptide backbone Angew. Chem., Int. Ed. 38, 2771-2774 (Pubitemid 29462851)
    • (1999) Angewandte Chemie - International Edition , vol.38 , Issue.18 , pp. 2771-2774
    • Behrendt, R.1    Renner, C.2    Schenk, M.3    Wang, F.4    Wachtveitl, J.5    Oesterhelt, D.6    Moroder, L.7
  • 25
    • 33645980385 scopus 로고    scopus 로고
    • A conformational two-state peptide model system containing an ultrafast but soft light switch
    • Loweneck, M., Milbradt, A. G., Root, C., Satzger, H., Zinth, W., Moroder, L., and Renner, C. (2006) A conformational two-state peptide model system containing an ultrafast but soft light switch Biophys. J. 90, 2099-2108
    • (2006) Biophys. J. , vol.90 , pp. 2099-2108
    • Loweneck, M.1    Milbradt, A.G.2    Root, C.3    Satzger, H.4    Zinth, W.5    Moroder, L.6    Renner, C.7
  • 26
    • 77749308325 scopus 로고    scopus 로고
    • Photo-regulation of DNA transcription by using photo-responsive T7 promoters and clarification of its mechanism
    • Liang, X. G., Wakuda, R., Fujioka, K., and Asanuma, H. (2010) Photo-regulation of DNA transcription by using photo-responsive T7 promoters and clarification of its mechanism FEBS J. 277, 1551-1561
    • (2010) FEBS J , vol.277 , pp. 1551-1561
    • Liang, X.G.1    Wakuda, R.2    Fujioka, K.3    Asanuma, H.4
  • 27
    • 31444454427 scopus 로고    scopus 로고
    • Azobenzene-tethered T7 promoter for efficient photoregulation of transcription
    • DOI 10.1021/ja055983k
    • Liu, M. Z., Asanuma, H., and Komiyama, M. (2006) Azobenzene-tethered T7 promoter for efficient photo-regulation of transcription J. Am. Chem. Soc. 128, 1009-1015 (Pubitemid 43153050)
    • (2006) Journal of the American Chemical Society , vol.128 , Issue.3 , pp. 1009-1015
    • Liu, M.1    Asanuma, H.2    Komiyama, M.3
  • 28
    • 77949405042 scopus 로고    scopus 로고
    • A light-driven DNA nanomachine for the efficient photoswitching of RNA digestion
    • Zhou, M. G., Liang, X. G., Mochizuki, T., and Asanuma, H. (2010) A light-driven DNA nanomachine for the efficient photoswitching of RNA digestion Angew. Chem., Int. Ed. 49, 2167-2170
    • (2010) Angew. Chem., Int. Ed. , vol.49 , pp. 2167-2170
    • Zhou, M.G.1    Liang, X.G.2    Mochizuki, T.3    Asanuma, H.4
  • 29
    • 69049100184 scopus 로고    scopus 로고
    • A supra-photoswitch involving sandwiched DNA base pairs and azobenzenes for light-driven nanostructures and nanodevices
    • Liang, X. G., Mochizuki, T., and Asanuma, H. (2009) A supra-photoswitch involving sandwiched DNA base pairs and azobenzenes for light-driven nanostructures and nanodevices Small 5, 1761-1768
    • (2009) Small , vol.5 , pp. 1761-1768
    • Liang, X.G.1    Mochizuki, T.2    Asanuma, H.3
  • 30
    • 72949100713 scopus 로고    scopus 로고
    • An interstrand-wedged duplex composed of alternating DNA base pairs and covalently attached intercalators
    • Liang, X. G., Nishioka, H., Mochizuki, T., and Asanuma, H. (2010) An interstrand-wedged duplex composed of alternating DNA base pairs and covalently attached intercalators J. Mater. Chem. 20, 575-581
    • (2010) J. Mater. Chem. , vol.20 , pp. 575-581
    • Liang, X.G.1    Nishioka, H.2    Mochizuki, T.3    Asanuma, H.4
  • 31
    • 79251578329 scopus 로고    scopus 로고
    • Design of a functional nanomaterial with recognition ability for constructing light-driven nanodevices
    • Liang, X. G., Mochizuki, T., Fujii, T., Kashida, H., and Asanuma, H. (2011) Design of a functional nanomaterial with recognition ability for constructing light-driven nanodevices Lect. Notes Comput. Sci. 6518, 112-122
    • (2011) Lect. Notes Comput. Sci. , vol.6518 , pp. 112-122
    • Liang, X.G.1    Mochizuki, T.2    Fujii, T.3    Kashida, H.4    Asanuma, H.5
  • 34
    • 0023047510 scopus 로고
    • Self-cleavage of plus and minus RNA transcripts of avocado sunblotch viroid
    • Hutchins, C. J., Rathjen, P. D., Forster, A. C., and Symons, R. H. (1986) Self-cleavage of plus and minus RNA transcripts of avocado sunblotch viroid Nucleic Acids Res. 14, 3627-3640
    • (1986) Nucleic Acids Res. , vol.14 , pp. 3627-3640
    • Hutchins, C.J.1    Rathjen, P.D.2    Forster, A.C.3    Symons, R.H.4
  • 35
    • 13844272635 scopus 로고    scopus 로고
    • Synthetic hammerhead ribozymes as therapeutic tools to control disease genes
    • Citti, L. and Rainaldi, G. (2005) Synthetic hammerhead ribozymes as therapeutic tools to control disease genes Curr. Gene Ther. 5, 11-24 (Pubitemid 40246739)
    • (2005) Current Gene Therapy , vol.5 , Issue.1 , pp. 11-24
    • Citti, L.1    Rainaldi, G.2
  • 36
    • 77949384984 scopus 로고    scopus 로고
    • The hammerhead ribozyme revisited: New biological insights for the development of therapeutic agents and for reverse genomics applications
    • (Morris, K. V. Ed.) Chapter 1, pp, Caister Academic Press, La Jolla, CA
    • Hean, J. and Weinberg, M. S. (2008) The hammerhead ribozyme revisited: New biological insights for the development of therapeutic agents and for reverse genomics applications. Rna and the Regulation of Gene Expression: A Hidden Layer of Complexity (Morris, K. V., Ed.) Chapter 1, pp 1-18, Caister Academic Press, La Jolla, CA.
    • (2008) Rna and the Regulation of Gene Expression: A Hidden Layer of Complexity , pp. 1-18
    • Hean, J.1    Weinberg, M.S.2
  • 37
    • 0001577727 scopus 로고    scopus 로고
    • Dendrimer porphyrins and metalloporphyrins: Syntheses, structures and functions
    • (Kadish, K. M. Smith, K. M. and Guilard, R. Eds.) Vol. Chapter 23, Academic Press, New York
    • Aida, T. and Jiang, D.-L. (2000) Dendrimer porphyrins and metalloporphyrins: syntheses, structures and functions. The Porphyrin Handbook (Kadish, K. M., Smith, K. M., and Guilard, R., Eds.) Vol. 3, Chapter 23, pp 369-384, Academic Press, New York.
    • (2000) The Porphyrin Handbook , vol.3 , pp. 369-384
    • Aida, T.1    Jiang, D.-L.2
  • 38
    • 33746228126 scopus 로고    scopus 로고
    • Tertiary Contacts Distant from the Active Site Prime a Ribozyme for Catalysis
    • DOI 10.1016/j.cell.2006.06.036, PII S0092867406008567
    • Martick, M. and Scott, W. G. (2006) Tertiary contacts distant from the active site prime a ribozyme for catalysis Cell 126, 309-320 (Pubitemid 44092962)
    • (2006) Cell , vol.126 , Issue.2 , pp. 309-320
    • Martick, M.1    Scott, W.G.2
  • 39
    • 0020660717 scopus 로고
    • Two pathogenetic types of endometrial carcinoma
    • Bohkman, J. V. (1983) Two pathogenetic types of endometrial carcinoma Gynecol. Oncol. 15, 10-17
    • (1983) Gynecol. Oncol. , vol.15 , pp. 10-17
    • Bohkman, J.V.1
  • 41
    • 0010066582 scopus 로고
    • A v-erbB-related protooncogene, c-erbB-2, is distinct from the c-erbB-1/epidermal growth factor-receptor gene and is amplified in a human salivary gland adenocarcinoma
    • DOI 10.1073/pnas.82.19.6497
    • Semba, K., Kamata, N., Toyoshima, K., and Yamamoto, T. (1985) A v-erbB-related protooncogene, c-erbB-2, is distinct from the c-erbB-1/epidermal growth factor-receptor gene and is amplified in a human salivary gland adenocarcinoma Proc. Natl. Acad. Sci. U. S. A. 82, 6497-6501 (Pubitemid 16230541)
    • (1985) Proceedings of the National Academy of Sciences of the United States of America , vol.82 , Issue.19 , pp. 6497-6501
    • Semba, K.1    Kamata, N.2    Toyoshima, K.3    Yamamoto, T.4
  • 42
    • 3042732096 scopus 로고    scopus 로고
    • Directed evolution of nucleic acid enzymes
    • DOI 10.1146/annurev.biochem.73.011303.073717
    • Joyce, G. F. (2004) Directed evolution of nucleic acid enzymes Annu. Rev. Biochem. 73, 791-836 (Pubitemid 39050386)
    • (2004) Annual Review of Biochemistry , vol.73 , pp. 791-836
    • Joyce, G.F.1
  • 44
    • 53949112902 scopus 로고    scopus 로고
    • Probing metal binding in the 8-17 DNAzyme by TbIII luminescence spectroscopy
    • Kim, H. K., Li, J., Nagraj, N., and Lu, Y. (2008) Probing metal binding in the 8-17 DNAzyme by TbIII luminescence spectroscopy Chem.-Eur. J. 14, 8696-8703
    • (2008) Chem. - Eur. J. , vol.14 , pp. 8696-8703
    • Kim, H.K.1    Li, J.2    Nagraj, N.3    Lu, Y.4
  • 45
    • 0032970173 scopus 로고    scopus 로고
    • Vanilloid (Capsaicin) receptors and mechanisms
    • Szallasi, A. and Blumberg, P. M. (1999) Vanilloid (capsaicin) receptors and mechanisms Pharmacol. Res. 51, 159-211 (Pubitemid 29269981)
    • (1999) Pharmacological Reviews , vol.51 , Issue.2 , pp. 159-211
    • Szallasi, A.1    Blumberg, P.M.2
  • 47
    • 0032967640 scopus 로고    scopus 로고
    • 3 purinoceptor and IB4 binding sites
    • DOI 10.1046/j.1460-9568.1999.00503.x
    • Guo, A., Vulchanova, L., Wang, J., Li, X., and Elde, R. (1999) Immunocytochemical localization of the vanilloid receptor 1 (VR1): Relationship to neuropeptides, the P2X3 purinoceptor and IB4 binding sites Eur. J. Neurosci. 11, 946-958 (Pubitemid 29106055)
    • (1999) European Journal of Neuroscience , vol.11 , Issue.3 , pp. 946-958
    • Guo, A.1    Vulchanova, L.2    Wang, J.3    Li, X.4    Elde, R.5
  • 49
    • 33646172099 scopus 로고    scopus 로고
    • Monitoring single-stranded DNA secondary structure formation by determining the topological state of DNA catenanes
    • Liang, X. G., Kuhn, H., and Frank-Kamenetskii, M. D. (2006) Monitoring single-stranded DNA secondary structure formation by determining the topological state of DNA catenanes Biophys. J. 90, 2877-2889
    • (2006) Biophys. J. , vol.90 , pp. 2877-2889
    • Liang, X.G.1    Kuhn, H.2    Frank-Kamenetskii, M.D.3
  • 50
    • 0037088757 scopus 로고    scopus 로고
    • Construction and electrophoretic migration of single-stranded DNA knots and catenanes
    • Bucka, A. and Stasiak, A. (2002) Construction and electrophoretic migration of single-stranded DNA knots and catenanes Nucleic Acids Res. 30, e24
    • (2002) Nucleic Acids Res. , vol.30 , pp. 24
    • Bucka, A.1    Stasiak, A.2
  • 51
    • 3843088438 scopus 로고    scopus 로고
    • Light-regulated catalysis by an RNA-cleaving deoxyribozyme
    • DOI 10.1016/j.jmb.2004.06.060, PII S0022283604007648
    • Liu, Y. and Sen, D. (2004) Light-regulated catalysis by an RNA-cleaving deoxyribozyme J. Mol. Biol. 341, 887-892 (Pubitemid 39037350)
    • (2004) Journal of Molecular Biology , vol.341 , Issue.4 , pp. 887-892
    • Liu, Y.1    Sen, D.2
  • 52
    • 33746217388 scopus 로고    scopus 로고
    • Reversible photocontrol of deoxyribozyme-catalyzed RNA cleavage under multiple-turnover conditions
    • DOI 10.1002/anie.200600164
    • Keiper, S. and Vyle, J. S. (2006) Reversible photocontrol of deoxyribozyme-catalyzed RNA cleavage under multiple-turnover conditions Angew. Chem., Int. Ed. 45, 3306-3309 (Pubitemid 44098996)
    • (2006) Angewandte Chemie - International Edition , vol.45 , Issue.20 , pp. 3306-3309
    • Keiper, S.1    Vyle, J.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.