Photo-mediated gene activation by using caged mRNA in zebrafish embryos

Methods in Cell Biology

Volumn 2004, Issue 77, 2004, Pages 159-171

  Ando, Hideki ^a,b   Furuta, Toshiaki ^b,c   Okamoto, Hitoshi ^a,b  

^a INST OF PHYS AND CHEMICAL RESEARCH   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c TOHO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

6 BROMO 4 DIAZOMETHYL 7 HYDROXYCOUMARIN; 6-BROMO-4-DIAZOMETHYL-7-HYDROXYCOUMARIN; AZO COMPOUND; COUMARIN DERIVATIVE; DIMETHYL SULFOXIDE; MESSENGER RNA;

ANIMAL; ANIMAL EMBRYO; ARTICLE; CHEMISTRY; DRUG EFFECT; GENE EXPRESSION REGULATION; GENETICS; INSTRUMENTATION; MICROINJECTION; PRENATAL DEVELOPMENT; ULTRAVIOLET RADIATION; ZEBRA FISH;

ANIMALS; AZO COMPOUNDS; COUMARINS; DIMETHYL SULFOXIDE; EMBRYO, NONMAMMALIAN; GENE EXPRESSION REGULATION; MICROINJECTIONS; RNA, MESSENGER; ULTRAVIOLET RAYS; ZEBRAFISH;

EID: 16644377512     PISSN: 0091679X     EISSN: None     Source Type: Book Series    
DOI: 10.1016/s0091-679x(04)77009-0     Document Type: Review

References (23)

1. Adams, S. R., and Tsien, R. Y. (1993). Controlling cell chemistry with caged compounds. Annu. Rev. Physiol. 55, 755-784.
2. Ando, H., Furuta, T., Tsien, R. Y., and Okamoto, H. (2001). Photo-mediated gene activation using caged RNA/DNA in zebrafish embryos. Nat. Genet. 28, 317-325.
3. Ando, H., and Okamoto, H. (2003). Practical procedure for ectopic induction of gene expression in zebrafish using Bhc-cged mRNA. Methods Cell Sci. 25, 25-31.
4. Barbazuk, W. B., Korf, I., Kadavi, C., Heyen, J., Tate, S., Wun, E., Bedell, J. A., McPherson, J. O., and Johnson, S. L. (2000). The syntenic relationship of the zebrafish and human genomes. Genome Res. 10, 1351-1358.
5. Chaulk, S. G., and MacMillan, A. M. (1998). Caged RNA: Photo-control of a ribozyme reaction. Nucleic Acids Res. 26, 3173-3178.
6. Furuta, T., Wang, S. S., Dantzker, J. L., Dore, T. M., Bybee, W. J., Callaway, E. M., Denk, W., and Tsien, R. Y. (1999). Brominated 7-hydroxycoumarin-4-ylmethyls: Photolabile protecting groups with biologically useful cross-sections for two photon photolysis. Proc. Natl. Acad. Sci. USA 96, 1193-1200.
7. Grzyska, P. K., Czyryca, P. G., Golighty, J., Small, K., Larsen, P., Hoff, R. H., and Hengge, A. C. (2002). Generality of solvation effects on the hydrolysis rates of phosphate monoesters and their possible relevance to enzymatic catalysis. J. Org. Chem. 67, 1214-1220.
8. Lin, W., and Lawrence, D. S. (2002). A strategy for the construction of caged diols using a photolabile protecting group. J. Org. Chem. 67, 2723-2726.
9. Lo, J., Lee, S., Xu, M., Liu, F., Ruan, H., Eun, A., He, Y., Ma, W., Wang, W., Wen, Z., and Peng, J. (2003). 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Genome Res. 13, 455-466.
10. Lu, M., Fedoryak, O. D., Moister, B. R., and Dore, T. M. (2003). Bhc-diol as a photolabile protecting group for aldehydes and ketones. Org. Lett. 5, 2119-2122.
11. Miller, F. (1972). Glycopeptides of human immunoglobulins. 3. The use and preparation of specific glycosidases. Immunochemistry 9, 217-228.
12. Monroe, W. T., McQuain, M. M., Chang, M. S., Alexander, J. S., and Haselton, F. R. (1999). Targeting expression with light using caged DNA. J. Biol. Chem. 274, 20895-20900.
13. Montgomery, H. J., Perdicakis, B., Fishlock, D., Lajoie, G. A., Jervis, E., and Guillemette, J. G. (2002). Photo-control of nitric oxide synthase activity using a caged isoform specific inhibitor. Bioorg. Med. Chem. 10, 1919-1927.
14. Nasevicius, A., and Ekker, S. C. (2000). Effective targeted gene 'knockdown' in zebrafish. Nat. Genet. 26, 216-220.
15. Pelliccioli, A. P., and Wirz, J. (2002). Photoremovable protecting groups: Reaction mechanisms and applications. Photochem. Photobiol. Sci. 1, 441-458.
16. Robu, V. G., Pfeiffer, E. S., Robia, S. L., Balijepali, R. C., Pi, Y., Kamp, T. J., and Walker, J. W. (2003). Localization of functional endothelin receptor signaling complexes in cardiac transverse tubules. J. Biol. Chem. 278, 48154-48164.
17. Rupp, R. A., Snider, L., and Weintraub, H. (1994). Xenopus embryos regulate the nuclear localization of XMyoD. Genes Dev. 11, 1311-1323.
18. Sanes, J. R., Rubenstein, J. L., and Nicolas, J. F. (1986). Use of a recombinant retrovirus to study post-implantation cell lineage in mouse embryos. EMBO J. 5, 3133-3142.
19. Suzuki, A. Z., Watanabe, T., Kawamoto, M., Nishiyama, K., Yamashita, H., Ishii, M., Iwamura, M., and Furuta, T. (2003). Coumarin-4-ylmethoxycarbonyls as phototriggers for alcohols and phenols. Org. Lett. 5, 4867-4870.
20. Tsien, R. Y., and Furuta, T. (2000a). Protecting groups with increased photosensitivities. US Patent Application WO/00/31588.
21. Tsien, R. Y., and Furuta, T. (2000b). Preparation of halogenated coumarins, quinoline-2-ones, xanthenes, thioxanthenes, selenoxanthenes, and anthracenes as photolabile protecting groups with increased photosensitivities. PCT International Application WO 2000031588.
22. Turner, D. L., and Weintraub, H. (1994). Expression of achaete-scute homolog 3 in Xenopus embryos converts ectodermal cells to a neural fate. Genes Dev. 8, 1434-1447.
23. Westerfield (2000). "The Zebrafish Book. A guide for the Laboratory Use of Zebrafish (Danio rerio)." University of Oregon Press, Eugene, OR.