Early stages of interactions of cell-penetrating peptide penetratin with a DPPC bilayer

Chemistry and Physics of Lipids

Volumn 169, Issue , 2013, Pages 85-94

  Pourmousa, Mohsen ^a   Karttunen, Mikko ^b  

^a UNIVERSITY OF WESTERN ONTARIO   (Canada)

^b UNIVERSITY OF WATERLOO   (Canada)

Author keywords

Cell penetrating peptides; Lipids; Molecular dynamics; Simulation

Indexed keywords

AMPHOLYTE; ARGININE; DIPALMITOYLPHOSPHATIDYLCHOLINE; LYSINE; PENETRATIN;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; HYDROGEN BOND; MEMBRANE BINDING; MOLECULAR DYNAMICS; PHOSPHOLIPID BILAYER; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN LIPID INTERACTION;

1,2-DIPALMITOYLPHOSPHATIDYLCHOLINE; CARRIER PROTEINS; CELL-PENETRATING PEPTIDES; HYDROGEN BONDING; HYDROPHOBIC AND HYDROPHILIC INTERACTIONS; LIPID BILAYERS; MOLECULAR DYNAMICS SIMULATION; POROSITY; PROTEIN BINDING; PROTEIN STRUCTURE, SECONDARY;

EID: 84876406177     PISSN: 00093084     EISSN: 18732941     Source Type: Journal    
DOI: 10.1016/j.chemphyslip.2013.02.011     Document Type: Article

References (64)

1. I.D. Alves, C.Y. Jiao, S. Aubry, B. Aussedat, F. Burlina, G. Chassaing, and S. Sagan Biochimica et Biophysica Acta 1798 2010 2231 2239
2. I.D. Alves, C. Bechara, A. Walrant, Y. Zaltsman, C.Y. Jiao, and S. Sagan PLoS ONE 6 2011 e24096
3. S. Balayssac, F. Burlina, O. Convert, G. Bolbach, G. Chassaing, and O. Lequin Biochemistry 45 2006 1408 1420
4. H.J.C. Berendsen, J.P.M. Postma, W.F. van Gunsteren, and J. Hermans B. Pullman, Intermolecular Forces 1981 Reidel Dordrecht, The Netherlands 331
5. H.J.C. Berendsen, J.P.M. Postma, W.F. van Gunsteren, A. DiNola, and J.R. Haak Journal of Chemical Physics 81 1984 3684 3690
6. O. Berger, O. Edholm, and F. Jähnig Biophysical Journal 72 1997 2002 2013
7. H. Binder, and G. Lindblom Biophysical Journal 85 2003 982 995
8. B. Christiaens, J. Grooten, M. Reusens, A. Joliot, M. Goethals, J. Vandekerckhove, A. Prochiantz, and M. Rosseneu European Journal of Biochemistry 271 2004 1187 1197
9. E.A. Cino, W.Y. Choy, and M. Karttunen Journal of Chemical Theory and Computation 8 2012 2725 2740
10. A.H.A. Clayton, B.W. Atcliffe, G.J. Howlett, and W.H. Sawyer Journal of Peptide Science 12 2006 233 238
11. A. Czajlik, E. Meskó, B. Penke, and A. Perczel Journal of Peptide Science 8 2002 151 171
12. J.H. Davis Biochimica et Biophysica Acta 737 1983 117 171
13. D. Derossi, A.H. Joliot, G. Chassaing, and A. Prochiantz Journal of Biological Chemistry 269 1994 10444 10450
14. D. Derossi, S. Calvet, A. Trembleau, A. Brunissen, G. Chassaing, and A. Prochiantz Journal of Biological Chemistry 271 1996 18188 18193
15. D. Derossi, G. Chassaing, and A. Prochiantz Trends in Cell Biology 8 1998 84 87
16. G. Dom, C. Shaw-Jackson, C. Matis, O. Bouffioux, J.J. Picard, A. Prochiantz, M.P. Mingeot-Leclercq, R. Brasseur, and R. Rezsohazy Nucleic Acids Research 31 2001 556 561
17. J.P. Douliez, A. Leonard, and E.J. Dufourc Biophysical Journal 68 1995 1727 1739
18. C.M. Dunkin, A. Pokorny, P.F. Almeida, and H.-S. Lee Journal of Physical Chemistry B 115 2011 1188 1198
19. S. El-Andaloussi, T. Holm, and Ü. Langel Current Pharmaceutical Design 11 2005 3597 3611
20. R.M. Epand, and H.J. Vogel Biochimica et Biophysica Acta 1462 1999 11 28
21. S. Fawell, J. Seery, Y. Daikh, C. Moore, L.L. Chen, B. Pepinsky, and J. Barsoum Proceedings of the National Academy of Sciences of the United States of America 91 1994 664 668
22. S. Futaki, T. Suzuki, W. Ohashi, T. Yagami, S. Tanaka, K. Ueda, and Y. Sugiura Journal of Biological Chemistry 276 2001 5836 5840
23. E. Guárdia, J. Martí, L. García-Tarrés, and D. Laria Journal of Molecular Liquids 117 2005 63 67
24. H.D. Herce, and A.E. Garcia Proceedings of the National Academy of Sciences of the United States of America 104 2007 20805 20810
25. B. Hess, H. Bekker, H.J.C. Berendsen, and J.G.E.M. Fraaije Journal of Computational Chemistry 18 1997 1463 1472
26. B. Hess, C. Kutzner, D. van der Spoel, and E. Lindahl Journal of Chemical Theory and Computation 4 2008 435 477
27. W. Kabsch, and C. Sander Biopolymers 22 1983 2577 2637
28. A. Kukol Journal of Chemical Theory and Computation 5 2009 615 626
29. M. Kupiainen, E. Falck, S. Ollila, P. Niemelä, A.A. Gurtovenko, M.T. Hyvönen, M. Patra, M. Karttunen, and I. Vattulainen Journal of Computational and Theoretical Nanoscience 2 2005 401 413
30. Ü. Langel, M. Pooga, C. Kairane, M. Zilmer, and T. Bartfai Regulatory Peptides 62 1996 47 52
31. B.W. Lee, R. Faller, A.K. Sum, I. Vattulainen, M. Patra, and M. Karttunen Fluid Phase Equilibria 225 2004 63 68
32. M.F. Lensink, B. Christiaens, J. Vandekerckhove, A. Prochiantz, and M. Rosseneu Biophysical Journal 88 2005 939 952
33. M. Lindberg, H. Biverståhl, A. Gräslund, and L. Mäler European Journal of Biochemistry 270 2003 3055 3063
34. M. Lindgren, X. Gallet, U. Soomets, M. Hällbrink, E. Bråkenhielm, M. Pooga, R. Brasseur, and Ü. Langel Bioconjugate Chemistry 11 2000 619 626
35. A. Luzar, and D. Chandler Journal of Chemical Physics 98 1993 8160 8173
36. M. Magzoub, L.E.G. Eriksson, and A. Gräslund Biochimica et Biophysica Acta 1563 2002 53 63
37. O. Maniti, E. Blanchard, G. Trugnan, A. Lamazière, and J. Ayala-Sanmartin International Journal of Biochemistry and Cell Biology 44 2012 869 875
38. A.E. Mark, S.P. van Helden, P.E. Smith, L.H.M. Janssen, and W.F. van Gunsteren Journal of the American Chemical Society 116 1994 6293 6302
39. M.C. Morris, P. Vidal, L. Chaloin, F. Heitz, and G. Divita Nucleic Acids Research 25 1997 2730 2736
40. K. Murzyn, W. Zhao, M. Karttunen, M. Kurdziel, and T. Róg Biointerphases 1 2006 98 105
41. J.F. Nagle, R. Zhang, S. Tristram-Nagle, W. Sun, H.I. Petrache, and R.M. Suter Biophysical Journal 70 1996 1419 1431
42. J. Oehlke, A. Scheller, B. Wiesner, E. Krause, M. Beyermann, E. Klauschenz, M. Melzig, and M. Bienert Biochimica et Biophysica Acta 1414 1998 127 139
43. M. Patra, M. Karttunen, M.T. Hyvönen, E. Falck, P. Lindqvist, and I. Vattulainen Biophysical Journal 84 2003 3636 3645
44. M. Patra, M. Karttunen, M.T. Hyvönen, E. Falck, and I. Vattulainen Journal of Physical Chemistry B 108 2004 4485 4494
45. D. Poger, W.F. van Gunsteren, and A.E. Mark Journal of Computational Chemistry 31 2009 1117 1125
46. C. Poillot, and M. De Waard Medecine & Sciences 27 2011 527 534
47. A.A. Polyansky, P.E. Volynsky, A.S. Arseniev, and R.G. Efremov Journal of Physical Chemistry B 113 2009 1107 1119
48. A.A. Polyansky, P.E. Volynsky, A.S. Arseniev, and R.G. Efremov Journal of Physical Chemistry B 113 2009 1120 1126
49. M. Pourmousa, J. Wong-ekkabut, M. Patra, and M. Karttunen Journal of Physical Chemistry B 117 2013 230 241
50. A.J. Robinson, W.G. Richards, P.J. Thomas, and M.M. Hann Biophysical Journal 68 1995 164 170
51. D. Terrone, L.W.S. Sang, L. Roudaia, and J.R. Silvius Biochemistry 42 2003 13787 13799
52. T. Darden, D. York, and P. Pedersen Journal of Chemical Physics 98 1993 10089 10092
53. R. Tréhin, U. Krauss, R. Muff, M. Meinecke, A.G. Beck-Sickinger, and H.P. Merkle Pharmaceutical Research 21 2004 33 42
54. J.P. Ulmschneider, and M.B. Ulmschneider Journal of Chemical Theory and Computation 5 2009 1803 1813
55. A.R. van Buuren, S.J. Marrink, and H.J.C. Berendsen Journal of Physical Chemistry 97 1993 9206 9212
56. J.W. Wollack, N.A. Zeliadt, D.G. Mullen, G. Amundson, S. Geier, S. Falkum, E.V. Wattenberg, G. Barany, and M.D. Distefano Journal of the American Chemical Society 131 2009 7293 7303
57. J. Wong-Ekkabut, and M. Karttunen Journal of Chemical Theory and Computation 8 2012 2905 2911
58. J. Wong-ekkabut, M.S. Miettinen, C. Dias, and M. Karttunen Nature Nanotechnology 5 2010 555 557
59. L. Yang, T.M. Weiss, R.I. Lehrer, and H.W. Huang Biophysical Journal 79 2000 2002 2009
60. J. Ye, S.A. Fox, M. Cudic, E.M. Rezler, J.L. Lauer, G.B. Fields, and A.C. Terentis Journal of the American Chemical Society 132 2010 980 988
61. S. Yesylevskyy, S.J. Marrink, and A.E. Mark Biophysical Journal 97 2009 40 49
62. M. Zasloff Nature 415 2002 389 395
63. W. Zhang, and S.O. Smith Biochemistry 44 2005 10110 10118
64. M. Zorko, and Ü. Langel Advanced Drug Delivery Reviews 57 2005 529 545