-
1
-
-
33645744610
-
KSHV infection and the pathogenesis of Kaposi's sarcoma
-
Ganem, D. (2006) KSHV infection and the pathogenesis of Kaposi's sarcoma. Annu. Rev. Pathol., 1, 273-296.
-
(2006)
Annu. Rev. Pathol.
, vol.1
, pp. 273-296
-
-
Ganem, D.1
-
2
-
-
0142060892
-
Chromatin remodeling of the Kaposi's sarcoma-associated herpesvirus ORF50 promoter correlates with reactivation from latency
-
Lu, F., Zhou, J., Wiedmer, A., Madden, K., Yuan, Y. and Lieberman, P.M. (2003) Chromatin remodeling of the Kaposi's sarcoma-associated herpesvirus ORF50 promoter correlates with reactivation from latency. J. Virol., 77, 11425-11435.
-
(2003)
J. Virol.
, vol.77
, pp. 11425-11435
-
-
Lu, F.1
Zhou, J.2
Wiedmer, A.3
Madden, K.4
Yuan, Y.5
Lieberman, P.M.6
-
3
-
-
77954688337
-
The epigenetic landscape of latent Kaposi sarcoma-associated herpesvirus genomes
-
Günther, T. and Grundhoff, A. (2010) The epigenetic landscape of latent Kaposi sarcoma-associated herpesvirus genomes. PLoS Pathog., 6, e1000935.
-
(2010)
PLoS Pathog.
, vol.6
-
-
Günther, T.1
Grundhoff, A.2
-
4
-
-
77957673318
-
Epigenetic analysis of KSHV latent and lytic genomes
-
Toth, Z., Maglinte, D.T., Lee, S.H., Lee, H.R., Wong, L.Y., Brulois, K.F., Lee, S., Buckley, J.D., Laird, P.W., Marquez, V.E. et al. (2010) Epigenetic analysis of KSHV latent and lytic genomes. PLoS Pathog., 6, e1001013.
-
(2010)
PLoS Pathog.
, vol.6
-
-
Toth, Z.1
Maglinte, D.T.2
Lee, S.H.3
Lee, H.R.4
Wong, L.Y.5
Brulois, K.F.6
Lee, S.7
Buckley, J.D.8
Laird, P.W.9
Marquez, V.E.10
-
5
-
-
34047114400
-
Lytic cycle switches of oncogenic human gammaherpesviruses
-
Miller, G., El-Guindy, A., Countryman, J., Ye, J. and Gradoville, L. (2007) Lytic cycle switches of oncogenic human gammaherpesviruses. Adv. Cancer Res., 97, 81-109.
-
(2007)
Adv. Cancer Res.
, vol.97
, pp. 81-109
-
-
Miller, G.1
El-Guindy, A.2
Countryman, J.3
Ye, J.4
Gradoville, L.5
-
6
-
-
76949093375
-
Nucleosome positioning: How is it established, and why does it matter?
-
Radman-Livaja, M. and Rando, O.J. (2010) Nucleosome positioning: how is it established, and why does it matter? Dev. Biol., 339, 258-266.
-
(2010)
Dev Biol.
, vol.339
, pp. 258-266
-
-
Radman-Livaja, M.1
Rando, O.J.2
-
7
-
-
60949096069
-
Epigenetic inheritance during the cell cycle
-
Probst, A.V., Dunleavy, E. and Almouzni, G. (2009) Epigenetic inheritance during the cell cycle. Nat. Rev. Mol. Cell. Biol., 10, 192-206.
-
(2009)
Nat. Rev. Mol. Cell. Biol.
, vol.10
, pp. 192-206
-
-
Probst, A.V.1
Dunleavy, E.2
Almouzni, G.3
-
8
-
-
84870340769
-
Epigenetics of aging
-
Tollefsbol, T.O. (ed.) Springer, New York, NY
-
Holliday, R. (2010) Epigenetics of aging. In: Tollefsbol, T.O. (ed.), Perspectives in Aging and Epigenetics. Springer, New York, NY, pp. 447-455.
-
(2010)
Perspectives in Aging and Epigenetics.
, pp. 447-455
-
-
Holliday, R.1
-
9
-
-
77956504685
-
Evolution of eukaryotic DNA methylation and the pursuit of safer sex
-
Zemach, A. and Zilberman, D. (2010) Evolution of eukaryotic DNA methylation and the pursuit of safer sex. Curr. Biol., 20, R780-R785.
-
(2010)
Curr. Biol.
, vol.20
-
-
Zemach, A.1
Zilberman, D.2
-
10
-
-
0035477969
-
Cutting edge: Role of toll-like receptor 9 in CpG DNA-induced activation of human cells
-
Takeshita, F., Leifer, C.A., Gursel, I., Ishii, K.J., Takeshita, S., Gursel, M. and Klinman, D.M. (2001) Cutting edge: role of toll-like receptor 9 in CpG DNA-induced activation of human cells. J. Immunol., 167, 3555-3558.
-
(2001)
J. Immunol.
, vol.167
, pp. 3555-3558
-
-
Takeshita, F.1
Leifer, C.A.2
Gursel, I.3
Ishii, K.J.4
Takeshita, S.5
Gursel, M.6
Klinman, D.M.7
-
11
-
-
54849442676
-
Single-molecule analysis of chromatin: Changing the view of genomes one molecule at a time
-
Pondugula, S. and Kladde, M.P. (2008) Single-molecule analysis of chromatin: changing the view of genomes one molecule at a time. J. Cell. Biochem., 105, 330-337.
-
(2008)
J. Cell. Biochem.
, vol.105
, pp. 330-337
-
-
Pondugula, S.1
Kladde, M.P.2
-
12
-
-
84857653579
-
Simultaneous single-molecule mapping of protein-DNA interactions and DNA methylation by MAPit
-
Chapter 21, Unit 21.22.21-18
-
Pardo, C.E., Darst, R.P., Nabilsi, N.H., Delmas, A.L. and Kladde, M.P. (2011) Simultaneous single-molecule mapping of protein-DNA interactions and DNA methylation by MAPit. Curr. Protoc. Mol. Biol., Chapter 21, Unit 21.22.21-18.
-
(2011)
Curr. Protoc. Mol. Biol.
-
-
Pardo, C.E.1
Darst, R.P.2
Nabilsi, N.H.3
Delmas, A.L.4
Kladde, M.P.5
-
13
-
-
84855874599
-
Simultaneous single-molecule detection of endogenous C-5 DNA methylation and chromatin accessibility using MAPit
-
Darst, R.P., Pardo, C.E., Pondugula, S., Gangaraju, V.K., Nabilsi, N.H., Bartholomew, B. and Kladde, M.P. (2012) Simultaneous single-molecule detection of endogenous C-5 DNA methylation and chromatin accessibility using MAPit. Methods Mol. Biol., 833, 125-141.
-
(2012)
Methods Mol. Biol.
, vol.833
, pp. 125-141
-
-
Darst, R.P.1
Pardo, C.E.2
Pondugula, S.3
Gangaraju, V.K.4
Nabilsi, N.H.5
Bartholomew, B.6
Kladde, M.P.7
-
14
-
-
0032169570
-
Cloning, characterization and expression of the gene coding for a cytosine-5-DNA methyltransferase recognizing GpC
-
Xu, M., Kladde, M.P., Van Etten, J.L. and Simpson, R.T. (1998) Cloning, characterization and expression of the gene coding for a cytosine-5-DNA methyltransferase recognizing GpC. Nucleic Acids Res., 26, 3961-3966.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 3961-3966
-
-
Xu, M.1
Kladde, M.P.2
Van Etten, J.L.3
Simpson, R.T.4
-
15
-
-
0026546877
-
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
-
Frommer, M., MacDonald, L.E., Millar, D.S., Collis, C.M., Watt, F., Grigg, G.W., Molloy, P.L. and Paul, C.L. (1992) A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl Acad. Sci. USA, 89, 1827-1831.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 1827-1831
-
-
Frommer, M.1
MacDonald, L.E.2
Millar, D.S.3
Collis, C.M.4
Watt, F.5
Grigg, G.W.6
Molloy, P.L.7
Paul, C.L.8
-
16
-
-
0028098217
-
Positioned nucleosomes inhibit Dam methylation in vivo
-
Kladde, M.P. and Simpson, R.T. (1994) Positioned nucleosomes inhibit Dam methylation in vivo. Proc. Natl Acad. Sci. USA, 91, 1361-1365.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 1361-1365
-
-
Kladde, M.P.1
Simpson, R.T.2
-
17
-
-
0029952990
-
Direct study of DNA-protein interactions in repressed and active chromatin in living cells
-
Kladde, M.P., Xu, M. and Simpson, R.T. (1996) Direct study of DNA-protein interactions in repressed and active chromatin in living cells. EMBO J., 15, 6290-6300.
-
(1996)
EMBO J.
, vol.15
, pp. 6290-6300
-
-
Kladde, M.P.1
Xu, M.2
Simpson, R.T.3
-
18
-
-
77952566675
-
SWI/SNF has intrinsic nucleosome disassembly activity that is dependent on adjacent nucleosomes
-
Dechassa, M.L., Sabri, A., Pondugula, S., Kassabov, S.R., Chatterjee, N., Kladde, M.P. and Bartholomew, B. (2010) SWI/SNF has intrinsic nucleosome disassembly activity that is dependent on adjacent nucleosomes. Mol. Cell, 38, 590-602.
-
(2010)
Mol. Cell
, vol.38
, pp. 590-602
-
-
Dechassa, M.L.1
Sabri, A.2
Pondugula, S.3
Kassabov, S.R.4
Chatterjee, N.5
Kladde, M.P.6
Bartholomew, B.7
-
19
-
-
77956931047
-
H2A.Z maintenance during mitosis reveals nucleosome shifting on mitotically silenced genes
-
Kelly, T.K., Miranda, T.B., Liang, G., Berman, B.P., Lin, J.C., Tanay, A. and Jones, P.A. (2010) H2A.Z maintenance during mitosis reveals nucleosome shifting on mitotically silenced genes. Mol. Cell, 39, 901-911.
-
(2010)
Mol. Cell
, vol.39
, pp. 901-911
-
-
Kelly, T.K.1
Miranda, T.B.2
Liang, G.3
Berman, B.P.4
Lin, J.C.5
Tanay, A.6
Jones, P.A.7
-
20
-
-
33847049022
-
Single-molecule and population probing of chromatin structure using DNA methyltransferases
-
Kilgore, J.A., Hoose, S.A., Gustafson, T.L., Porter, W. and Kladde, M.P. (2007) Single-molecule and population probing of chromatin structure using DNA methyltransferases. Methods, 41, 320-332.
-
(2007)
Methods
, vol.41
, pp. 320-332
-
-
Kilgore, J.A.1
Hoose, S.A.2
Gustafson, T.L.3
Porter, W.4
Kladde, M.P.5
-
21
-
-
77952414230
-
Hypomethylation of a LINE-1 promoter activates an alternate transcript of the MET oncogene in bladders with cancer
-
Wolff, E.M., Byun, H.M., Han, H.F., Sharma, S., Nichols, P.W., Siegmund, K.D., Yang, A.S., Jones, P.A. and Liang, G. (2010) Hypomethylation of a LINE-1 promoter activates an alternate transcript of the MET oncogene in bladders with cancer. PLoS Genet., 6, e1000917.
-
(2010)
PLoS Genet.
, vol.6
-
-
Wolff, E.M.1
Byun, H.M.2
Han, H.F.3
Sharma, S.4
Nichols, P.W.5
Siegmund, K.D.6
Yang, A.S.7
Jones, P.A.8
Liang, G.9
-
22
-
-
78651336469
-
MethylViewer: Computational analysis and editing for bisulfite sequencing and methyltransferase accessibility protocol for individual templates (MAPit) projects
-
Pardo, C.E., Carr, I.M., Hoffman, C.J., Darst, R.P., Markham, A.F., Bonthron, D.T. and Kladde, M.P. (2011) MethylViewer: computational analysis and editing for bisulfite sequencing and methyltransferase accessibility protocol for individual templates (MAPit) projects. Nucleic Acids Res., 39, e5.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Pardo, C.E.1
Carr, I.M.2
Hoffman, C.J.3
Darst, R.P.4
Markham, A.F.5
Bonthron, D.T.6
Kladde, M.P.7
-
23
-
-
80755144044
-
WIF1 is a frequent target for epigenetic silencing in squamous cell carcinoma of the cervix
-
Delmas, A.L., Riggs, B.M., Pardo, C.E., Dyer, L.M., Darst, R.P., Izumchenko, E., Monroe, M., Hakam, A., Kladde, M.P., Siegel, E.M. et al. (2011) WIF1 is a frequent target for epigenetic silencing in squamous cell carcinoma of the cervix. Carcinogenesis, 32, 1625-1633.
-
(2011)
Carcinogenesis
, vol.32
, pp. 1625-1633
-
-
Delmas, A.L.1
Riggs, B.M.2
Pardo, C.E.3
Dyer, L.M.4
Darst, R.P.5
Izumchenko, E.6
Monroe, M.7
Hakam, A.8
Kladde, M.P.9
Siegel, E.M.10
-
24
-
-
80052284848
-
OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes
-
You, J.S., Kelly, T.K., De Carvalho, D.D., Taberlay, P.C., Liang, G. and Jones, P.A. (2011) OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes. Proc. Natl Acad. Sci. USA, 108, 14497-14502.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 14497-14502
-
-
You, J.S.1
Kelly, T.K.2
De Carvalho, D.D.3
Taberlay, P.C.4
Liang, G.5
Jones, P.A.6
-
25
-
-
83255192190
-
Dynamic nucleosome-depleted regions at androgen receptor enhancers in the absence of ligand in prostate cancer cells
-
Andreu-Vieyra, C., Lai, J., Berman, B.P., Frenkel, B., Jia, L., Jones, P.A. and Coetzee, G.A. (2011) Dynamic nucleosome-depleted regions at androgen receptor enhancers in the absence of ligand in prostate cancer cells. Mol. Cell. Biol., 31, 4648-4662.
-
(2011)
Mol. Cell. Biol.
, vol.31
, pp. 4648-4662
-
-
Andreu-Vieyra, C.1
Lai, J.2
Berman, B.P.3
Frenkel, B.4
Jia, L.5
Jones, P.A.6
Coetzee, G.A.7
-
26
-
-
84859261580
-
Gene reactivation by 5-aza-20-deoxycytidine-induced demethylation requires SRCAP-mediated H2A.Z insertion to establish nucleosome depleted regions
-
Yang, X., Noushmehr, H., Han, H., Andreu-Vieyra, C., Liang, G. and Jones, P.A. (2012) Gene reactivation by 5-aza-20-deoxycytidine-induced demethylation requires SRCAP-mediated H2A.Z insertion to establish nucleosome depleted regions. PLoS Genet., 8, e1002604.
-
(2012)
PLoS Genet.
, vol.8
-
-
Yang, X.1
Noushmehr, H.2
Han, H.3
Andreu-Vieyra, C.4
Liang, G.5
Jones, P.A.6
-
27
-
-
77954386433
-
Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing
-
Bell, O., Schwaiger, M., Oakeley, E.J., Lienert, F., Beisel, C., Stadler, M.B. and Schübeler, D. (2010) Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing. Nat. Struct. Mol. Biol., 17, 894-900.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 894-900
-
-
Bell, O.1
Schwaiger, M.2
Oakeley, E.J.3
Lienert, F.4
Beisel, C.5
Stadler, M.B.6
Schübeler, D.7
-
28
-
-
33644794061
-
Active PHO5 chromatin encompasses variable numbers of nucleosomes at individual promoters
-
Jessen, W.J., Hoose, S.A., Kilgore, J.A. and Kladde, M.P. (2006) Active PHO5 chromatin encompasses variable numbers of nucleosomes at individual promoters. Nat. Struct. Mol. Biol., 13, 256-263.
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 256-263
-
-
Jessen, W.J.1
Hoose, S.A.2
Kilgore, J.A.3
Kladde, M.P.4
-
29
-
-
33749403746
-
Constitutive nucleosome depletion and ordered factor assembly at the GRP78 promoter revealed by single molecule footprinting
-
Gal-Yam, E.N., Jeong, S., Tanay, A., Egger, G., Lee, A.S. and Jones, P.A. (2006) Constitutive nucleosome depletion and ordered factor assembly at the GRP78 promoter revealed by single molecule footprinting. PLoS Genet., 2, e160.
-
(2006)
PLoS Genet.
, vol.2
-
-
Gal-Yam, E.N.1
Jeong, S.2
Tanay, A.3
Egger, G.4
Lee, A.S.5
Jones, P.A.6
-
30
-
-
0029876473
-
Lytic growth of Kaposi's sarcoma-associated herpesvirus (human herpesvirus 8) in culture
-
Renne, R., Zhong, W., Herndier, B., McGrath, M., Abbey, N., Kedes, D. and Ganem, D. (1996) Lytic growth of Kaposi's sarcoma-associated herpesvirus (human herpesvirus 8) in culture. Nat. Med., 2, 342-346.
-
(1996)
Nat. Med.
, vol.2
, pp. 342-346
-
-
Renne, R.1
Zhong, W.2
Herndier, B.3
McGrath, M.4
Abbey, N.5
Kedes, D.6
Ganem, D.7
-
31
-
-
0037377723
-
Global changes in Kaposi's sarcomaassociated virus gene expression patterns following expression of a tetracycline-inducible Rta transactivator
-
Nakamura, H., Lu, M., Gwack, Y., Souvlis, J., Zeichner, S.L. and Jung, J.U. (2003) Global changes in Kaposi's sarcomaassociated virus gene expression patterns following expression of a tetracycline-inducible Rta transactivator. J. Virol., 77, 4205-4220.
-
(2003)
J. Virol.
, vol.77
, pp. 4205-4220
-
-
Nakamura, H.1
Lu, M.2
Gwack, Y.3
Souvlis, J.4
Zeichner, S.L.5
Jung, J.U.6
-
32
-
-
33646440294
-
Long-term-infected telomerase-immortalized endothelial cells: A model for Kaposi's sarcoma-associated herpesvirus latency in vitro and in vivo
-
An, F.Q., Folarin, H.M., Compitello, N., Roth, J., Gerson, S.L., McCrae, K.R., Fakhari, F.D., Dittmer, D.P. and Renne, R. (2006) Long-term-infected telomerase-immortalized endothelial cells: a model for Kaposi's sarcoma-associated herpesvirus latency in vitro and in vivo. J. Virol., 80, 4833-4846.
-
(2006)
J. Virol.
, vol.80
, pp. 4833-4846
-
-
An, F.Q.1
Folarin, H.M.2
Compitello, N.3
Roth, J.4
Gerson, S.L.5
McCrae, K.R.6
Fakhari, F.D.7
Dittmer, D.P.8
Renne, R.9
-
33
-
-
77954187310
-
Bisulfite sequencing of DNA
-
Chapter 7, Unit 7.9.1-17
-
Darst, R.P., Pardo, C.E., Ai, L., Brown, K.D. and Kladde, M.P. (2010) Bisulfite sequencing of DNA. Curr. Protoc. Mol. Biol., Chapter 7, Unit 7.9.1-17.
-
(2010)
Curr. Protoc. Mol. Biol.
-
-
Darst, R.P.1
Pardo, C.E.2
Ai, L.3
Brown, K.D.4
Kladde, M.P.5
-
34
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M.B., Spellman, P.T., Brown, P.O. and Botstein, D. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA, 95, 14863-14868.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
35
-
-
64149097786
-
The MIQE guidelines: Minimum information for publication of quantitative real-time PCR experiments
-
Bustin, S.A., Benes, V., Garson, J.A., Hellemans, J., Huggett, J., Kubista, M., Mueller, R., Nolan, T., Pfaffl, M.W., Shipley, G.L. et al. (2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin. Chem., 55, 611-622.
-
(2009)
Clin. Chem.
, vol.55
, pp. 611-622
-
-
Bustin, S.A.1
Benes, V.2
Garson, J.A.3
Hellemans, J.4
Huggett, J.5
Kubista, M.6
Mueller, R.7
Nolan, T.8
Pfaffl, M.W.9
Shipley, G.L.10
-
36
-
-
27644491500
-
Transcripts encoding K12, v-FLIP, v-cyclin, and the microRNA cluster of Kaposi's sarcoma-associated herpesvirus originate from a common promoter
-
Pearce, M., Matsumura, S. and Wilson, A.C. (2005) Transcripts encoding K12, v-FLIP, v-cyclin, and the microRNA cluster of Kaposi's sarcoma-associated herpesvirus originate from a common promoter. J. Virol., 79, 14457-14464.
-
(2005)
J. Virol.
, vol.79
, pp. 14457-14464
-
-
Pearce, M.1
Matsumura, S.2
Wilson, A.C.3
-
37
-
-
0027362621
-
CTCF, a conserved nuclear factor required for optimal transcriptional activity of the chicken c-myc gene, is an 11-Zn-finger protein differentially expressed in multiple forms
-
Klenova, E.M., Nicolas, R.H., Paterson, H.F., Carne, A.F., Heath, C.M., Goodwin, G.H., Neiman, P.E. and Lobanenkov, V.V. (1993) CTCF, a conserved nuclear factor required for optimal transcriptional activity of the chicken c-myc gene, is an 11-Zn-finger protein differentially expressed in multiple forms. Mol. Cell. Biol., 13, 7612-7624.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 7612-7624
-
-
Klenova, E.M.1
Nicolas, R.H.2
Paterson, H.F.3
Carne, A.F.4
Heath, C.M.5
Goodwin, G.H.6
Neiman, P.E.7
Lobanenkov, V.V.8
-
38
-
-
39449111307
-
Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators
-
Stedman, W., Kang, H., Lin, S., Kissil, J.L., Bartolomei, M.S. and Lieberman, P.M. (2008) Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators. EMBO J., 27, 654-666.
-
(2008)
EMBO J.
, vol.27
, pp. 654-666
-
-
Stedman, W.1
Kang, H.2
Lin, S.3
Kissil, J.L.4
Bartolomei, M.S.5
Lieberman, P.M.6
-
39
-
-
80052336129
-
Coordination of KSHV latent and lytic gene control by CTCF-cohesin mediated chromosome conformation
-
Kang, H., Wiedmer, A., Yuan, Y., Robertson, E. and Lieberman, P.M. (2011) Coordination of KSHV latent and lytic gene control by CTCF-cohesin mediated chromosome conformation. PLoS Pathog., 7, e1002140.
-
(2011)
PLoS Pathog.
, vol.7
-
-
Kang, H.1
Wiedmer, A.2
Yuan, Y.3
Robertson, E.4
Lieberman, P.M.5
-
40
-
-
84929281641
-
-
Arvin, A., Campadelli-Fiume, G., Mocarski, E., Moore, P.S., Roizman, B., Whitley, R. and Yamanishi, K. (eds) Cambridge University Press, Cambridge
-
Lieberman, P.M., Hu, J. and Renne, R. (2007) In: Arvin, A., Campadelli-Fiume, G., Mocarski, E., Moore, P.S., Roizman, B., Whitley, R. and Yamanishi, K. (eds), Human Herpesviruses: Biology, Therapy, and Immunoprophylaxis. Cambridge University Press, Cambridge.
-
(2007)
Human Herpesviruses: Biology, Therapy, and Immunoprophylaxis
-
-
Lieberman, P.M.1
Hu, J.2
Renne, R.3
-
41
-
-
79955488304
-
Dynamic analysis of stochastic transcription cycles
-
Harper, C.V., Finkenstadt, B., Woodcock, D.J., Friedrichsen, S., Semprini, S., Ashall, L., Spiller, D.G., Mullins, J.J., Rand, D.A., Davis, J.R. et al. (2011) Dynamic analysis of stochastic transcription cycles. PLoS Biol., 9, e1000607.
-
(2011)
PLoS Biol.
, vol.9
-
-
Harper, C.V.1
Finkenstadt, B.2
Woodcock, D.J.3
Friedrichsen, S.4
Semprini, S.5
Ashall, L.6
Spiller, D.G.7
Mullins, J.J.8
Rand, D.A.9
Davis, J.R.10
-
42
-
-
41149097014
-
Temporal association of the herpes simplex virus genome with histone proteins during a lytic infection
-
Oh, J. and Fraser, N.W. (2008) Temporal association of the herpes simplex virus genome with histone proteins during a lytic infection. J. Virol., 82, 3530-3537.
-
(2008)
J. Virol.
, vol.82
, pp. 3530-3537
-
-
Oh, J.1
Fraser, N.W.2
-
43
-
-
0032567394
-
Reactivation of Kaposi's sarcoma-associated herpesvirus infection from latency by expression of the ORF 50 transactivator, a homolog of the EBV R protein
-
Lukac, D.M., Renne, R., Kirshner, J.R. and Ganem, D. (1998) Reactivation of Kaposi's sarcoma-associated herpesvirus infection from latency by expression of the ORF 50 transactivator, a homolog of the EBV R protein. Virology, 252, 304-312.
-
(1998)
Virology
, vol.252
, pp. 304-312
-
-
Lukac, D.M.1
Renne, R.2
Kirshner, J.R.3
Ganem, D.4
-
44
-
-
0034606671
-
Inflammatory cytokines and the reactivation of Kaposi's sarcoma-associated herpesvirus lytic replication
-
Chang, J., Renne, R., Dittmer, D. and Ganem, D. (2000) Inflammatory cytokines and the reactivation of Kaposi's sarcoma-associated herpesvirus lytic replication. Virology, 266, 17-25.
-
(2000)
Virology
, vol.266
, pp. 17-25
-
-
Chang, J.1
Renne, R.2
Dittmer, D.3
Ganem, D.4
-
45
-
-
2642586357
-
Kaposi's sarcoma-associated herpesvirus-encoded latency-associated nuclear antigen inhibits lytic replication by targeting RTA: A potential mechanism for virus-mediated control of latency
-
Lan, K., Kuppers, D.A., Verma, S.C. and Robertson, E.S. (2004) Kaposi's sarcoma-associated herpesvirus-encoded latency-associated nuclear antigen inhibits lytic replication by targeting RTA: a potential mechanism for virus-mediated control of latency. J. Virol., 78, 6585-6594.
-
(2004)
J. Virol.
, vol.78
, pp. 6585-6594
-
-
Lan, K.1
Kuppers, D.A.2
Verma, S.C.3
Robertson, E.S.4
-
46
-
-
0034532496
-
Auto-activation of the RTA gene of human herpesvirus-8/Kaposi's sarcoma-associated herpesvirus
-
Deng, H., Young, A. and Sun, R. (2000) Auto-activation of the RTA gene of human herpesvirus-8/Kaposi's sarcoma-associated herpesvirus. J. Gen. Virol., 81, 3043-3048.
-
(2000)
J. Gen. Virol.
, vol.81
, pp. 3043-3048
-
-
Deng, H.1
Young, A.2
Sun, R.3
-
47
-
-
0042890345
-
CCAAT/ enhancer-binding protein-alpha is induced during the early stages of Kaposi's sarcoma-associated herpesvirus (KSHV) lytic cycle reactivation and together with the KSHV replication and transcription activator (RTA) cooperatively stimulates the viral RTA, MTA, and PAN promoters
-
Wang, S.E., Wu, F.Y., Yu, Y. and Hayward, G.S. (2003) CCAAT/ enhancer-binding protein-alpha is induced during the early stages of Kaposi's sarcoma-associated herpesvirus (KSHV) lytic cycle reactivation and together with the KSHV replication and transcription activator (RTA) cooperatively stimulates the viral RTA, MTA, and PAN promoters. J. Virol., 77, 9590-9612.
-
(2003)
J. Virol.
, vol.77
, pp. 9590-9612
-
-
Wang, S.E.1
Wu, F.Y.2
Yu, Y.3
Hayward, G.S.4
-
48
-
-
0034960341
-
Octamer-binding sequence is a key element for the autoregulation of Kaposi's sarcoma-associated herpesvirus ORF50/Lyta gene expression
-
Sakakibara, S., Ueda, K., Chen, J., Okuno, T. and Yamanishi, K. (2001) Octamer-binding sequence is a key element for the autoregulation of Kaposi's sarcoma-associated herpesvirus ORF50/Lyta gene expression. J. Virol., 75, 6894-6900.
-
(2001)
J. Virol.
, vol.75
, pp. 6894-6900
-
-
Sakakibara, S.1
Ueda, K.2
Chen, J.3
Okuno, T.4
Yamanishi, K.5
-
49
-
-
79954628592
-
Role of the cellular transcription factor YY1 in the latent-lytic switch of Kaposi's sarcoma-associated herpesvirus
-
Chang, P.J., Chen, L.W., Shih, Y.C., Tsai, P.H., Liu, A.C., Hung, C.H., Liou, J.Y. and Wang, S.S. (2011) Role of the cellular transcription factor YY1 in the latent-lytic switch of Kaposi's sarcoma-associated herpesvirus. Virology, 413, 194-204.
-
(2011)
Virology
, vol.413
, pp. 194-204
-
-
Chang, P.J.1
Chen, L.W.2
Shih, Y.C.3
Tsai, P.H.4
Liu, A.C.5
Hung, C.H.6
Liou, J.Y.7
Wang, S.S.8
-
50
-
-
1842431602
-
Early activation of the Kaposi's sarcoma-associated herpesvirus RTA, RAP, and MTA promoters by the tetradecanoyl phorbol acetate-induced AP1 pathway
-
Wang, S.E., Wu, F.Y., Chen, H., Shamay, M., Zheng, Q. and Hayward, G.S. (2004) Early activation of the Kaposi's sarcoma-associated herpesvirus RTA, RAP, and MTA promoters by the tetradecanoyl phorbol acetate-induced AP1 pathway. J. Virol., 78, 4248-4267.
-
(2004)
J. Virol.
, vol.78
, pp. 4248-4267
-
-
Wang, S.E.1
Wu, F.Y.2
Chen, H.3
Shamay, M.4
Zheng, Q.5
Hayward, G.S.6
-
51
-
-
67650407491
-
X-box binding protein 1 contributes to induction of the Kaposi's sarcoma-associated herpesvirus lytic cycle under hypoxic conditions
-
Dalton-Griffin, L., Wilson, S.J. and Kellam, P. (2009) X-box binding protein 1 contributes to induction of the Kaposi's sarcoma-associated herpesvirus lytic cycle under hypoxic conditions. J. Virol., 83, 7202-7209.
-
(2009)
J. Virol.
, vol.83
, pp. 7202-7209
-
-
Dalton-Griffin, L.1
Wilson, S.J.2
Kellam, P.3
-
52
-
-
58149396884
-
Alternatively initiated gene 50/RTA transcripts expressed during murine and human gammaherpesvirus reactivation from latency
-
Gray, K.S., Allen, R.D. III, Farrell, M.L., Forrest, J.C. and Speck, S.H. (2009) Alternatively initiated gene 50/RTA transcripts expressed during murine and human gammaherpesvirus reactivation from latency. J. Virol., 83, 314-328.
-
(2009)
J. Virol.
, vol.83
, pp. 314-328
-
-
Gray, K.S.1
Allen Iii, R.D.2
Farrell, M.L.3
Forrest, J.C.4
Speck, S.H.5
-
53
-
-
0035957366
-
Activation of latent Kaposi's sarcoma-associated herpesvirus by demethylation of the promoter of the lytic transactivator
-
Chen, J., Ueda, K., Sakakibara, S., Okuno, T., Parravicini, C., Corbellino, M. and Yamanishi, K. (2001) Activation of latent Kaposi's sarcoma-associated herpesvirus by demethylation of the promoter of the lytic transactivator. Proc. Natl Acad. Sci. USA, 98, 4119-4124.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 4119-4124
-
-
Chen, J.1
Ueda, K.2
Sakakibara, S.3
Okuno, T.4
Parravicini, C.5
Corbellino, M.6
Yamanishi, K.7
-
54
-
-
77951996351
-
Array-based transcript profiling and limiting-dilution reverse transcription-PCR analysis identify additional latent genes in Kaposi's sarcoma-associated herpesvirus
-
Chandriani, S. and Ganem, D. (2010) Array-based transcript profiling and limiting-dilution reverse transcription-PCR analysis identify additional latent genes in Kaposi's sarcoma-associated herpesvirus. J. Virol., 84, 5565-5573.
-
(2010)
J. Virol.
, vol.84
, pp. 5565-5573
-
-
Chandriani, S.1
Ganem, D.2
-
55
-
-
0030980240
-
Sensitivity of Kaposi's sarcoma-associated herpesvirus replication to antiviral drugs. Implications for potential therapy
-
Kedes, D.H. and Ganem, D. (1997) Sensitivity of Kaposi's sarcoma-associated herpesvirus replication to antiviral drugs. Implications for potential therapy. J. Clin. Invest., 99, 2082-2086.
-
(1997)
J. Clin. Invest.
, vol.99
, pp. 2082-2086
-
-
Kedes, D.H.1
Ganem, D.2
-
56
-
-
0035027712
-
Transcription program of human herpesvirus 8 (Kaposi's sarcoma-associated herpesvirus)
-
Paulose-Murphy, M., Ha, N.K., Xiang, C., Chen, Y., Gillim, L., Yarchoan, R., Meltzer, P., Bittner, M., Trent, J. and Zeichner, S. (2001) Transcription program of human herpesvirus 8 (Kaposi's sarcoma-associated herpesvirus). J. Virol., 75, 4843-4853.
-
(2001)
J. Virol.
, vol.75
, pp. 4843-4853
-
-
Paulose-Murphy, M.1
Ha, N.K.2
Xiang, C.3
Chen, Y.4
Gillim, L.5
Yarchoan, R.6
Meltzer, P.7
Bittner, M.8
Trent, J.9
Zeichner, S.10
-
57
-
-
60149100371
-
Activation of host translational control pathways by a viral developmental switch
-
Arias, C., Walsh, D., Harbell, J., Wilson, A.C. and Mohr, I. (2009) Activation of host translational control pathways by a viral developmental switch. PLoS Pathog., 5, e1000334.
-
(2009)
PLoS Pathog.
, vol.5
-
-
Arias, C.1
Walsh, D.2
Harbell, J.3
Wilson, A.C.4
Mohr, I.5
-
58
-
-
75149168431
-
Regulation of KSHV lytic switch protein expression by a virus-encoded microRNA: An evolutionary adaptation that fine-tunes lytic reactivation
-
Bellare, P. and Ganem, D. (2009) Regulation of KSHV lytic switch protein expression by a virus-encoded microRNA: an evolutionary adaptation that fine-tunes lytic reactivation. Cell Host Microbe, 6, 570-575.
-
(2009)
Cell Host Microbe
, vol.6
, pp. 570-575
-
-
Bellare, P.1
Ganem, D.2
-
59
-
-
55549147516
-
Temporal dynamics of cytomegalovirus chromatin assembly in productively infected human cells
-
Nitzsche, A., Paulus, C. and Nevels, M. (2008) Temporal dynamics of cytomegalovirus chromatin assembly in productively infected human cells. J. Virol., 82, 11167-11180.
-
(2008)
J. Virol.
, vol.82
, pp. 11167-11180
-
-
Nitzsche, A.1
Paulus, C.2
Nevels, M.3
-
60
-
-
59749104270
-
The histone variant H3.3 regulates gene expression during lytic infection with herpes simplex virus type 1
-
Placek, B.J., Huang, J., Kent, J.R., Dorsey, J., Rice, L., Fraser, N.W. and Berger, S.L. (2009) The histone variant H3.3 regulates gene expression during lytic infection with herpes simplex virus type 1. J. Virol., 83, 1416-1421.
-
(2009)
J. Virol.
, vol.83
, pp. 1416-1421
-
-
Placek, B.J.1
Huang, J.2
Kent, J.R.3
Dorsey, J.4
Rice, L.5
Fraser, N.W.6
Berger, S.L.7
-
61
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein, B.E., Mikkelsen, T.S., Xie, X., Kamal, M., Huebert, D.J., Cuff, J., Fry, B., Meissner, A., Wernig, M., Plath, K. et al. (2006) A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell, 125, 315-326.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
-
62
-
-
10544236112
-
Kaposi's sarcoma-associated herpesvirus gene expression in endothelial (spindle) tumor cells
-
Staskus, K.A., Zhong, W., Gebhard, K., Herndier, B., Wang, H., Renne, R., Beneke, J., Pudney, J., Anderson, D.J., Ganem, D. et al. (1997) Kaposi's sarcoma-associated herpesvirus gene expression in endothelial (spindle) tumor cells. J. Virol., 71, 715-719.
-
(1997)
J. Virol.
, vol.71
, pp. 715-719
-
-
Staskus, K.A.1
Zhong, W.2
Gebhard, K.3
Herndier, B.4
Wang, H.5
Renne, R.6
Beneke, J.7
Pudney, J.8
Anderson, D.J.9
Ganem, D.10
-
63
-
-
48249153426
-
The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome
-
Fu, Y., Sinha, M., Peterson, C.L. and Weng, Z. (2008) The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. PLoS Genet., 4, e1000138.
-
(2008)
PLoS Genet.
, vol.4
-
-
Fu, Y.1
Sinha, M.2
Peterson, C.L.3
Weng, Z.4
-
64
-
-
60349089645
-
Nucleosome positioning and gene regulation: Advances through genomics
-
Jiang, C.Z. and Pugh, B.F. (2009) Nucleosome positioning and gene regulation: advances through genomics. Nat. Rev. Genet., 10, 161-172.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 161-172
-
-
Jiang, C.Z.1
Pugh, B.F.2
-
65
-
-
78149430876
-
Molecular coupling of DNA methylation and histone methylation
-
Hashimoto, H., Vertino, P.M. and Cheng, X. (2010) Molecular coupling of DNA methylation and histone methylation. Epigenomics, 2, 657-669.
-
(2010)
Epigenomics
, vol.2
, pp. 657-669
-
-
Hashimoto, H.1
Vertino, P.M.2
Cheng, X.3
-
66
-
-
77958134523
-
CTCF prevents the epigenetic drift of EBV latency promoter Qp
-
Tempera, I., Wiedmer, A., Dheekollu, J. and Lieberman, P.M. (2010) CTCF prevents the epigenetic drift of EBV latency promoter Qp. PLoS Pathog., 6, e1001048.
-
(2010)
PLoS Pathog.
, vol.6
-
-
Tempera, I.1
Wiedmer, A.2
Dheekollu, J.3
Lieberman, P.M.4
-
67
-
-
77949274530
-
Chromatin organization of gammaherpesvirus latent genomes
-
Tempera, I. and Lieberman, P.M. (2010) Chromatin organization of gammaherpesvirus latent genomes. Biochim. Biophys. Acta, 1799, 236-245.
-
(2010)
Biochim. Biophys. Acta
, vol.1799
, pp. 236-245
-
-
Tempera, I.1
Lieberman, P.M.2
-
68
-
-
1542571327
-
Inefficient establishment of KSHV latency suggests an additional role for continued lytic replication in Kaposi sarcoma pathogenesis
-
Gründhoff, A. and Ganem, D. (2004) Inefficient establishment of KSHV latency suggests an additional role for continued lytic replication in Kaposi sarcoma pathogenesis. J. Clin. Invest., 113, 124-136.
-
(2004)
J. Clin. Invest.
, vol.113
, pp. 124-136
-
-
Gründhoff, A.1
Ganem, D.2
-
69
-
-
35348912553
-
Analysis of viral cis elements conferring Kaposi's sarcoma-associated herpesvirus episome partitioning and maintenance
-
Skalsky, R.L., Hu, J. and Renne, R. (2007) Analysis of viral cis elements conferring Kaposi's sarcoma-associated herpesvirus episome partitioning and maintenance. J. Virol., 81, 9825-9837.
-
(2007)
J. Virol.
, vol.81
, pp. 9825-9837
-
-
Skalsky, R.L.1
Hu, J.2
Renne, R.3
-
70
-
-
79251539852
-
Herpesviruses carrying a Brainbow cassette reveal replication and expression of limited numbers of incoming genomes
-
Kobiler, O., Lipman, Y., Therkelsen, K., Daubechies, I. and Enquist, L.W. (2010) Herpesviruses carrying a Brainbow cassette reveal replication and expression of limited numbers of incoming genomes. Nat. Commun., 1, 146.
-
(2010)
Nat. Commun.
, vol.1
, pp. 146
-
-
Kobiler, O.1
Lipman, Y.2
Therkelsen, K.3
Daubechies, I.4
Enquist, L.W.5
-
71
-
-
23944496395
-
MSRE-PCR for analysis of gene-specific DNA methylation
-
Melnikov, A.A., Gartenhaus, R.B., Levenson, A.S., Motchoulskaia, N.A. and Levenson Chernokhvostov, V.V. (2005) MSRE-PCR for analysis of gene-specific DNA methylation. Nucleic Acids Res., 33, e93.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Melnikov, A.A.1
Gartenhaus, R.B.2
Levenson, A.S.3
Motchoulskaia, N.A.4
Levenson Chernokhvostov, V.V.5
-
72
-
-
0035146369
-
A quantification of human cells using an ERV-3 real time PCR assay
-
Yuan, C.C., Miley, W. and Waters, D. (2001) A quantification of human cells using an ERV-3 real time PCR assay. J. Virol. Methods, 91, 109-117.
-
(2001)
J. Virol. Methods
, vol.91
, pp. 109-117
-
-
Yuan, C.C.1
Miley, W.2
Waters, D.3
-
73
-
-
75949087264
-
Regulation of NF-kB inhibitor IkBa and viral replication by a KSHV microRNA
-
Lei, X., Bai, Z., Ye, F., Xie, J., Kim, C.G., Huang, Y. and Gao, S.J. (2010) Regulation of NF-kB inhibitor IkBa and viral replication by a KSHV microRNA. Nat. Cell. Biol., 12, 193-199.
-
(2010)
Nat. Cell. Biol.
, vol.12
, pp. 193-199
-
-
Lei, X.1
Bai, Z.2
Ye, F.3
Xie, J.4
Kim, C.G.5
Huang, Y.6
Gao, S.J.7
-
74
-
-
0036316347
-
Transcriptional regulation of the interleukin-6 gene of human herpesvirus 8 (Kaposi's sarcoma-associated herpesvirus)
-
Deng, H., Song, M.J., Chu, J.T. and Sun, R. (2002) Transcriptional regulation of the interleukin-6 gene of human herpesvirus 8 (Kaposi's sarcoma-associated herpesvirus). J. Virol., 76, 8252-8264.
-
(2002)
J. Virol.
, vol.76
, pp. 8252-8264
-
-
Deng, H.1
Song, M.J.2
Chu, J.T.3
Sun, R.4
|