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Volumn , Issue SUPPL. 95, 2011, Pages

Simultaneous single-molecule mapping of protein-DNA interactions and DNA methylation by MAPit

Author keywords

Chromatin; DNA methylation; DNA methyltransferases; Footprinting; Nucleosomes; Single molecule analysis

Indexed keywords

ALCOHOL; BISULFITE; CHLOROFORM; DNA METHYLTRANSFERASE; EDETIC ACID; GENOMIC DNA; PHENOL; TRYPSIN;

EID: 84857653579     PISSN: 19343639     EISSN: 19343647     Source Type: Journal    
DOI: 10.1002/0471142727.mb2122s95     Document Type: Article
Times cited : (11)

References (80)
  • 1
    • 0033753779 scopus 로고    scopus 로고
    • The DNA methyltransferases of mammals
    • Bestor, T.H. 2000. The DNA methyltransferases of mammals. Hum. Mol. Genet. 9:2395-2402.
    • (2000) Hum. Mol. Genet. , vol.9 , pp. 2395-2402
    • Bestor, T.H.1
  • 2
    • 23044490934 scopus 로고    scopus 로고
    • Transposon silencing and imprint establishment in mammalian germ cells
    • Bestor, T.H. and Bourc'his, D. 2004. Transposon silencing and imprint establishment in mammalian germ cells. Cold Spring Harb. Symp. Quant. Biol. 69:381-387.
    • (2004) Cold Spring Harb. Symp. Quant. Biol. , vol.69 , pp. 381-387
    • Bestor, T.H.1    Bourc'his, D.2
  • 3
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • Bird, A. 2002. DNA methylation patterns and epigenetic memory. Genes Dev. 16:6-21.
    • (2002) Genes Dev , vol.16 , pp. 6-21
    • Bird, A.1
  • 4
    • 2942574467 scopus 로고    scopus 로고
    • Removal of promoter nucleosomes by disassembly rather than sliding in vivo
    • Boeger, H., Griesenbeck, J., Strattan, J.S., and Kornberg, R.D. 2004. Removal of promoter nucleosomes by disassembly rather than sliding in vivo. Mol. Cell 14:667-673.
    • (2004) Mol. Cell , vol.14 , pp. 667-673
    • Boeger, H.1    Griesenbeck, J.2    Strattan, J.S.3    Kornberg, R.D.4
  • 5
    • 67650725820 scopus 로고    scopus 로고
    • The biology of chromatin remodeling complexes
    • Clapier, C.R. and Cairns, B.R. 2009. The biology of chromatin remodeling complexes. Ann. Rev. Biochem. 78:273-304.
    • (2009) Ann. Rev. Biochem. , vol.78 , pp. 273-304
    • Clapier, C.R.1    Cairns, B.R.2
  • 8
    • 79956330964 scopus 로고    scopus 로고
    • CpG islands and the regulation of transcription
    • Deaton, A.M. and Bird, A. 2011. CpG islands and the regulation of transcription. Genes Dev. 25:1010-1022.
    • (2011) Genes Dev. , vol.25 , pp. 1010-1022
    • Deaton, A.M.1    Bird, A.2
  • 11
    • 0033305212 scopus 로고    scopus 로고
    • Transcriptional activation of c-fos protooncogene by 17β-estradiol: Mechanism of aryl hydrocarbon receptor-mediated inhibition
    • Duan, R., Porter, W., Samudio, I., Vyhlidal, C., Kladde, M., and Safe, S. 1999. Transcriptional activation of c-fos protooncogene by 17β-estradiol: Mechanism of aryl hydrocarbon receptor-mediated inhibition. Mol. Endocrinol. 13:1511-1521.
    • (1999) Mol. Endocrinol. , vol.13 , pp. 1511-1521
    • Duan, R.1    Porter, W.2    Samudio, I.3    Vyhlidal, C.4    Kladde, M.5    Safe, S.6
  • 12
    • 29144435153 scopus 로고    scopus 로고
    • Footprinting of mammalian promoters: Use of a CpG DNA methyltransferase revealing nucleosome positions at a single molecule level
    • Fatemi, M., Pao, M.M., Jeong, S., Gal-Yam, E.N., Egger, G., Weisenberger, D.J., and Jones, P.A. 2005. Footprinting of mammalian promoters: Use of a CpG DNA methyltransferase revealing nucleosome positions at a single molecule level. Nucleic Acids Res. 33:e176.
    • (2005) Nucleic Acids Res. , vol.33
    • Fatemi, M.1    Pao, M.M.2    Jeong, S.3    Gal-Yam, E.N.4    Egger, G.5    Weisenberger, D.J.6    Jones, P.A.7
  • 13
    • 0020596461 scopus 로고
    • Expression of a bacterial modification methylase gene in yeast.
    • Fehér, Z., Kiss, A., and Venetianer, P. 1983. Expression of a bacterial modification methylase gene in yeast. Nature 302:266-268.
    • (1983) Nature , vol.302 , pp. 266-268
    • Fehér, Z.1    Kiss, A.2    Venetianer, P.3
  • 14
    • 29244469466 scopus 로고    scopus 로고
    • The epigenetic progenitor origin of human cancer
    • Feinberg, A.P., Ohlsson, R., and Henikoff, S. 2006. The epigenetic progenitor origin of human cancer. Nat. Rev. Genet. 7:21-33.
    • (2006) Nat. Rev. Genet. , vol.7 , pp. 21-33
    • Feinberg, A.P.1    Ohlsson, R.2    Henikoff, S.3
  • 16
    • 33749403746 scopus 로고    scopus 로고
    • Constitutive nucleosome depletion and ordered factor assembly at the GRP78 promoter revealed by single molecule footprinting
    • Gal-Yam, E.N., Jeong, S., Tanay, A., Egger, G., Lee, A.S., and Jones, P.A. 2006. Constitutive nucleosome depletion and ordered factor assembly at the GRP78 promoter revealed by single molecule footprinting. PLoS Genet. 2:e160.
    • (2006) PLoS Genet , vol.2
    • Gal-Yam, E.N.1    Jeong, S.2    Tanay, A.3    Egger, G.4    Lee, A.S.5    Jones, P.A.6
  • 17
    • 15744401773 scopus 로고    scopus 로고
    • Eukaryotic cytosine methyltransferases
    • Goll, M.G., and Bestor, T.H. 2005. Eukaryotic cytosine methyltransferases. Ann. Rev. Biochem. 74:481-514.
    • (2005) Ann. Rev. Biochem. , vol.74 , pp. 481-514
    • Goll, M.G.1    Bestor, T.H.2
  • 18
    • 0026552380 scopus 로고
    • Telomere-proximal DNA in Saccharomyces cerevisiae is refractory to methyltransferase activity in vivo
    • Gottschling, D.E. 1992. Telomere-proximal DNA in Saccharomyces cerevisiae is refractory to methyltransferase activity in vivo. Proc. Natl. Acad. Sci. U.S.A. 89:4062-4065.
    • (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 4062-4065
    • Gottschling, D.E.1
  • 19
    • 40049102090 scopus 로고    scopus 로고
    • Inheritance of an epigenetic mark: The CpG DNA methyltransferase 1 is required for de novo establishment of a complex pattern of non-CpG methylation
    • Grandjean, V., Yaman, R., Cuzin, F., and Rassoulzadegan, M. 2007. Inheritance of an epigenetic mark: The CpG DNA methyltransferase 1 is required for de novo establishment of a complex pattern of non-CpG methylation. PLoS One 2:e1136.
    • (2007) PLoS One , vol.2
    • Grandjean, V.1    Yaman, R.2    Cuzin, F.3    Rassoulzadegan, M.4
  • 20
    • 0019875880 scopus 로고
    • Methylation of CpG sequences in eukaryotic DNA
    • Gruenbaum, Y., Stein, R., Cedar, H., and Razin, A. 1981. Methylation of CpG sequences in eukaryotic DNA. FEBS Lett. 124:67-71.
    • (1981) FEBS Lett. , vol.124 , pp. 67-71
    • Gruenbaum, Y.1    Stein, R.2    Cedar, H.3    Razin, A.4
  • 22
    • 0016898893 scopus 로고
    • Bisulfite modification of nucleic acids and their constituents
    • Hayatsu, H. 1976. Bisulfite modification of nucleic acids and their constituents. Prog. Nucleic Acids Res. 16:75-124.
    • (1976) Prog. Nucleic Acids Res. , vol.16 , pp. 75-124
    • Hayatsu, H.1
  • 24
    • 34249330696 scopus 로고    scopus 로고
    • Epigenetic inheritance in plants
    • Henderson, I.R. and Jacobsen, S.E. 2007. Epigenetic inheritance in plants. Nature 447:418-424.
    • (2007) Nature , vol.447 , pp. 418-424
    • Henderson, I.R.1    Jacobsen, S.E.2
  • 25
    • 9744251005 scopus 로고    scopus 로고
    • Biochemistry and biology of mammalian DNA methyltransferases
    • Hermann, A., Gowher, H., and Jeltsch, A. 2004. Biochemistry and biology of mammalian DNA methyltransferases. Cell. Mol. Life Sci. 61:2571-2587.
    • (2004) Cell. Mol. Life Sci. , vol.61 , pp. 2571-2587
    • Hermann, A.1    Gowher, H.2    Jeltsch, A.3
  • 26
    • 77956504367 scopus 로고    scopus 로고
    • The inherent processivity of the human de novo methyltransferase 3A (DNMT3A) is enhanced by DNMT3L
    • Holz-Schietinger, C. and Reich, N.O. 2010. The inherent processivity of the human de novo methyltransferase 3A (DNMT3A) is enhanced by DNMT3L. J. Biol. Chem. 285:29091-29100.
    • (2010) J. Biol. Chem. , vol.285 , pp. 29091-29100
    • Holz-Schietinger, C.1    Reich, N.O.2
  • 27
    • 33749040675 scopus 로고    scopus 로고
    • DNA methyltransferase probing of DNA-protein interactions
    • Hoose, S.A. and Kladde, M.P. 2006. DNA methyltransferase probing of DNA-protein interactions. Methods Mol. Biol. 338:225-244.
    • (2006) Methods Mol. Biol. , vol.338 , pp. 225-244
    • Hoose, S.A.1    Kladde, M.P.2
  • 29
    • 77956189495 scopus 로고    scopus 로고
    • Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
    • Ito, S., D'Alessio, A.C., Taranova, O.V., Hong, K., Sowers, L.C., and Zhang, Y. 2010. Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature 466:1129-1133.
    • (2010) Nature , vol.466 , pp. 1129-1133
    • Ito, S.1    D'Alessio, A.C.2    Taranova, O.V.3    Hong, K.4    Sowers, L.C.5    Zhang, Y.6
  • 30
    • 0037372003 scopus 로고    scopus 로고
    • Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals
    • Jaenisch, R. and Bird, A. 2003. Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals. Nat. Genet. 33:245-254.
    • (2003) Nat. Genet. , vol.33 , pp. 245-254
    • Jaenisch, R.1    Bird, A.2
  • 32
    • 33644794061 scopus 로고    scopus 로고
    • Active PHO5 chromatin encompasses variable numbers of nucleosomes at individual promoters
    • Jessen, W.J., Hoose, S.A., Kilgore, J.A., and Kladde, M.P. 2006. Active PHO5 chromatin encompasses variable numbers of nucleosomes at individual promoters. Nat. Struct. Mol. Biol. 13:256-263.
    • (2006) Nat. Struct. Mol. Biol. , vol.13 , pp. 256-263
    • Jessen, W.J.1    Hoose, S.A.2    Kilgore, J.A.3    Kladde, M.P.4
  • 33
    • 60349089645 scopus 로고    scopus 로고
    • Nucleosome positioning and gene regulation: Advances through genomics
    • Jiang, C. and Pugh, B.F. 2009. Nucleosome positioning and gene regulation: Advances through genomics. Nat. Rev. Genet. 10:161-172.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 161-172
    • Jiang, C.1    Pugh, B.F.2
  • 34
    • 33847065486 scopus 로고    scopus 로고
    • The epigenomics of cancer
    • Jones, P.A. and Baylin, S.B. 2007. The epigenomics of cancer. Cell 128:683-692.
    • (2007) Cell , vol.128 , pp. 683-692
    • Jones, P.A.1    Baylin, S.B.2
  • 35
    • 33847049022 scopus 로고    scopus 로고
    • Single-molecule and population probing of chromatin structure using DNA methyltransferases
    • Kilgore, J.A., Hoose, S.A., Gustafson, T.L., Porter, W., and Kladde,M.P. 2007. Single-molecule and population probing of chromatin structure using DNA methyltransferases. Methods 41:320-332.
    • (2007) Methods , vol.41 , pp. 320-332
    • Kilgore, J.A.1    Hoose, S.A.2    Gustafson, T.L.3    Porter, W.4    Kladde, M.P.5
  • 36
    • 0028098217 scopus 로고
    • Positioned nucleosomes inhibit Dam methylation in vivo Proc
    • Kladde, M.P. and Simpson, R.T. 1994. Positioned nucleosomes inhibit Dam methylation in vivo Proc. Natl. Acad. Sci. U.S.A. 91:1361-1365.
    • (1994) Natl. Acad. Sci. U.S.A. , vol.91 , pp. 1361-1365
    • Kladde, M.P.1    Simpson, R.T.2
  • 37
    • 0029952990 scopus 로고    scopus 로고
    • Direct study of DNA-protein interactions in repressed and active chromatin in living cells
    • Kladde, M.P., Xu, M., and Simpson, R.T. 1996. Direct study of DNA-protein interactions in repressed and active chromatin in living cells. EMBO J. 15:6290-6300.
    • (1996) EMBO J , vol.15 , pp. 6290-6300
    • Kladde, M.P.1    Xu, M.2    Simpson, R.T.3
  • 38
    • 10044296220 scopus 로고    scopus 로고
    • Evidence for histone eviction in trans upon induction of the yeast PHO5 promoter
    • Korber, P., Luckenbach, T., Blaschke, D., and Hörz, W. 2004. Evidence for histone eviction in trans upon induction of the yeast PHO5 promoter. Mol. Cell. Biol. 24:10965-10974.
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 10965-10974
    • Korber, P.1    Luckenbach, T.2    Blaschke, D.3    Hörz, W.4
  • 40
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • Kouzarides, T. 2007. Chromatin modifications and their function. Cell 128:693-705.
    • (2007) Cell , vol.128 , pp. 693-705
    • Kouzarides, T.1
  • 41
    • 66149123748 scopus 로고    scopus 로고
    • The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
    • Kriaucionis, S. and Heintz, N. 2009. The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science 324:929-930.
    • (2009) Science , vol.324 , pp. 929-930
    • Kriaucionis, S.1    Heintz, N.2
  • 44
    • 1542328273 scopus 로고    scopus 로고
    • Nucleosome remodeling: One mechanism, many phenomena?
    • Längst, G. and Becker, P.B. 2004. Nucleosome remodeling: One mechanism, many phenomena? Biochim. Biophys. Acta 1677:58-63.
    • (2004) Biochim. Biophys. Acta , vol.1677 , pp. 58-63
    • Längst, G.1    Becker, P.B.2
  • 45
    • 37449033507 scopus 로고    scopus 로고
    • DNA methylation in mouse embryonic stem cells and development
    • Latham, T., Gilbert, N., and Ramsahoye, B. 2008. DNA methylation in mouse embryonic stem cells and development. Cell Tissue Res. 331:31-55.
    • (2008) Cell Tissue Res , vol.331 , pp. 31-55
    • Latham, T.1    Gilbert, N.2    Ramsahoye, B.3
  • 47
    • 33847070442 scopus 로고    scopus 로고
    • The role of chromatin during transcription
    • Li, B., Carey, M., and Workman, J.L. 2007. The role of chromatin during transcription. Cell 128:707-719.
    • (2007) Cell , vol.128 , pp. 707-719
    • Li, B.1    Carey, M.2    Workman, J.L.3
  • 49
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8-Å resolution
    • Luger, K., Mader, A.W., Richmond, R.K., Sargent, D.F., and Richmond, T.J. 1997. Crystal structure of the nucleosome core particle at 2.8-Å resolution. Nature 389:251-260.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 51
    • 67449113768 scopus 로고    scopus 로고
    • Cancer DNA methylation: Molecular mechanisms and clinical implications
    • McCabe, M.T., Brandes, J.C., and Vertino, P.M. 2009. Cancer DNA methylation: Molecular mechanisms and clinical implications. Clin. Cancer Res. 15:3927-3937.
    • (2009) Clin. Cancer Res. , vol.15 , pp. 3927-3937
    • McCabe, M.T.1    Brandes, J.C.2    Vertino, P.M.3
  • 52
    • 33744948882 scopus 로고    scopus 로고
    • Differential transcriptional regulation by mouse single-minded 2s
    • Metz, R.P., Kwak,H.I., Gustafson, T., Laffin, B, and Porter, W.W. 2006. Differential transcriptional regulation by mouse single-minded 2s. J. Biol. Chem. 281:10839-10848.
    • (2006) J. Biol. Chem. , vol.281 , pp. 10839-10848
    • Metz, R.P.1    Kwak, H.I.2    Gustafson, T.3    Laffin, B.4    Porter, W.W.5
  • 53
    • 27144510368 scopus 로고    scopus 로고
    • Genome-scale profiling of histone H3.3 replacement patterns
    • Mito, Y., Henikoff, J.G., and Henikoff, S. 2005. Genome-scale profiling of histone H3.3 replacement patterns. Nat. Genet. 37:1090-1097.
    • (2005) Nat. Genet. , vol.37 , pp. 1090-1097
    • Mito, Y.1    Henikoff, J.G.2    Henikoff, S.3
  • 54
    • 66149100139 scopus 로고    scopus 로고
    • DNA methylation inhibits p53-mediated survivin repression
    • Nabilsi, N.H., Broaddus, R.R., and Loose, D.S. 2009. DNA methylation inhibits p53-mediated survivin repression. Oncogene 28:2046-2050.
    • (2009) Oncogene , vol.28 , pp. 2046-2050
    • Nabilsi, N.H.1    Broaddus, R.R.2    Loose, D.S.3
  • 55
    • 78651339186 scopus 로고    scopus 로고
    • DNA methyltransferase probing of chromatin structure within populations and on single molecules
    • Pardo, C., Hoose, S.A., Pondugula, S., and Kladde, M.P. 2009. DNA methyltransferase probing of chromatin structure within populations and on single molecules. Methods Mol. Biol. 523:41-65.
    • (2009) Methods Mol. Biol. , vol.523 , pp. 41-65
    • Pardo, C.1    Hoose, S.A.2    Pondugula, S.3    Kladde, M.P.4
  • 56
    • 78651336469 scopus 로고    scopus 로고
    • MethylViewer: Computational analysis and editing for bisulfite sequencing and methyltransferase accessibility protocol for individual templates (MAPit) projects
    • Pardo, C.E., Carr, I.M., Hoffman, C.J., Darst, R.P., Markham, A.F., Bonthron, D.T., and Kladde, M.P. 2010. MethylViewer: Computational analysis and editing for bisulfite sequencing and methyltransferase accessibility protocol for individual templates (MAPit) projects. Nucleic Acids Res. 39:e5.
    • (2010) Nucleic Acids Res. , vol.39
    • Pardo, C.E.1    Carr, I.M.2    Hoffman, C.J.3    Darst, R.P.4    Markham, A.F.5    Bonthron, D.T.6    Kladde, M.P.7
  • 57
    • 54849442676 scopus 로고    scopus 로고
    • Single-molecule analysis of chromatin: Changing the view of genomes one molecule at a time
    • Pondugula, S. and Kladde, M.P. 2008. Single-molecule analysis of chromatin: Changing the view of genomes one molecule at a time. J. Cell. Biochem. 105:330-337.
    • (2008) J. Cell. Biochem. , vol.105 , pp. 330-337
    • Pondugula, S.1    Kladde, M.P.2
  • 58
    • 0019415710 scopus 로고
    • Deoxyribonucleic acid methylation and chromatin organization in Tetrahymena thermophila
    • Pratt, K.I. and Hattman, S. 1981. Deoxyribonucleic acid methylation and chromatin organization in Tetrahymena thermophila. Mol. Cell. Biol. 1:600-608.
    • (1981) Mol. Cell. Biol. , vol.1 , pp. 600-608
    • Pratt, K.I.1    Hattman, S.2
  • 59
    • 0020801819 scopus 로고
    • Nucleosome phasing in Tetrahymena macronuclei
    • Pratt, K.I. and Hattman, S. 1983. Nucleosome phasing in Tetrahymena macronuclei. J. Protozool. 30:592-598.
    • (1983) J. Protozool. , vol.30 , pp. 592-598
    • Pratt, K.I.1    Hattman, S.2
  • 60
    • 0021132637 scopus 로고
    • 5-Methylcytosine is not detectable in Saccharomyces cerevisiae DNA
    • Proffitt, J.H., Davie, J.R., Swinton, D., and Hattman, S. 1984. 5-Methylcytosine is not detectable in Saccharomyces cerevisiae DNA. Mol. Cell. Biol. 4:985-988.
    • (1984) Mol. Cell. Biol. , vol.4 , pp. 985-988
    • Proffitt, J.H.1    Davie, J.R.2    Swinton, D.3    Hattman, S.4
  • 61
    • 0034625064 scopus 로고    scopus 로고
    • Non-CpG methylation is prevalent in embryonicstem cells and may be mediated by DNA methyltransferase 3a
    • Ramsahoye, B.H., Biniszkiewicz, D., Lyko, F., Clark, V., Bird, A.P., and Jaenisch, R. 2000. Non-CpG methylation is prevalent in embryonicstem cells and may be mediated by DNA methyltransferase 3a. Proc. Natl. Acad. Sci. USA 97:5237-5242.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 5237-5242
    • Ramsahoye, B.H.1    Biniszkiewicz, D.2    Lyko, F.3    Clark, V.4    Bird, A.P.5    Jaenisch, R.6
  • 62
    • 0026478814 scopus 로고
    • Mode of action of the Spiroplasma CpG methylase M.SssI
    • Renbaum, P. and Razin, A. 1992. Mode of action of the Spiroplasma CpG methylase M.SssI. FEBS Lett. 313:243-247.
    • (1992) FEBS Lett. , vol.313 , pp. 243-247
    • Renbaum, P.1    Razin, A.2
  • 63
    • 0025220507 scopus 로고
    • Cloning, characterization, and expression in Escherichia coli of the gene coding for the CpG DNA from Spiroplasma sp strain MQ-1 (M.SssI)
    • Renbaum, P.,Abrahamove,D., Fainsod, A.,Wilson, G., Rottem, S., and Razin, A. 1990. Cloning, characterization, and expression in Escherichia coli of the gene coding for the CpG DNA from Spiroplasma sp strain MQ-1 (M.SssI). Nucleic Acids Res. 18:1145-1152.
    • (1990) Nucleic Acids Res , vol.18 , pp. 1145-1152
    • Renbaum, P.1    Abrahamove, D.2    Fainsod, A.3    Wilson, G.4    Rottem, S.5    Razin, A.6
  • 64
    • 1842314454 scopus 로고
    • Sequence specific positioning of nucleosomes over the steroid inducible MMTV promoter
    • Richard-Foy, H. and Hager, G.L. 1987. Sequence specific positioning of nucleosomes over the steroid inducible MMTV promoter. EMBO J. 6:2321-2328.
    • (1987) EMBO J. , vol.6 , pp. 2321-2328
    • Richard-Foy, H.1    Hager, G.L.2
  • 65
    • 0035962631 scopus 로고    scopus 로고
    • DNA methylation, methyltransferases, and cancer
    • Robertson, K.D. 2001. DNA methylation, methyltransferases, and cancer. Oncogene 20:3139-3155.
    • (2001) Oncogene , vol.20 , pp. 3139-3155
    • Robertson, K.D.1
  • 66
    • 22844457491 scopus 로고    scopus 로고
    • DNA methylation and human disease
    • Robertson, K.D. 2005. DNA methylation and human disease. Nat. Rev. Genet. 6:597-610.
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 597-610
    • Robertson, K.D.1
  • 67
    • 0034305821 scopus 로고    scopus 로고
    • DNA methylation in health and disease
    • Robertson, K.D. and Wolffe, A.P. 2000. DNA methylation in health and disease. Nat. Rev. Genet. 1:11-19.
    • (2000) Nat. Rev. Genet. , vol.1 , pp. 11-19
    • Robertson, K.D.1    Wolffe, A.P.2
  • 68
    • 33745790132 scopus 로고    scopus 로고
    • Chromatin remodeling: The industrial revolution of DNA around histones
    • Saha, A., Wittmeyer, J., and Cairns, B.R. 2006. Chromatin remodeling: The industrial revolution of DNA around histones. Nat. Rev. Mol. Cell. Biol. 7:437-447.
    • (2006) Nat. Rev. Mol. Cell. Biol. , vol.7 , pp. 437-447
    • Saha, A.1    Wittmeyer, J.2    Cairns, B.R.3
  • 69
    • 0035089857 scopus 로고    scopus 로고
    • Transcriptional activation of deoxyribonucleic acid polymerase α gene expression in MCF-7 cells by 17β-estradiol
    • Samudio, I., Vyhlidal, C., Wang, F., Stoner, M., Chen, I., Kladde, M., Barhoumi, R., Burghardt, R., and Safe, S. 2001. Transcriptional activation of deoxyribonucleic acid polymerase α gene expression in MCF-7 cells by 17β-estradiol. Endocrinology 142:1000-1008.
    • (2001) Endocrinology , vol.142 , pp. 1000-1008
    • Samudio, I.1    Vyhlidal, C.2    Wang, F.3    Stoner, M.4    Chen, I.5    Kladde, M.6    Barhoumi, R.7    Burghardt, R.8    Safe, S.9
  • 70
    • 0026591791 scopus 로고
    • Active genes in yeast display enhanced in vivo accessibility to foreign DNA methylases: A novel in vivo probe for chromatin structure of yeast
    • Singh, J. and Klar, A.J.S. 1992. Active genes in yeast display enhanced in vivo accessibility to foreign DNA methylases: A novel in vivo probe for chromatin structure of yeast. Genes Dev. 6:186-196.
    • (1992) Genes Dev , vol.6 , pp. 186-196
    • Singh, J.1    Klar, A.J.S.2
  • 72
    • 0033564915 scopus 로고    scopus 로고
    • Bisulfite sequencing protocol displays both 5-methylcytosine and N4-methylcytosine
    • Vilkaitis, G. and Klimasauskas, S. 1999. Bisulfite sequencing protocol displays both 5-methylcytosine and N4-methylcytosine. Anal. Biochem. 271:116-119.
    • (1999) Anal. Biochem. , vol.271 , pp. 116-119
    • Vilkaitis, G.1    Klimasauskas, S.2
  • 73
    • 12844278737 scopus 로고    scopus 로고
    • Processive methylation of hemimethylated CpG sites by mouse Dnmt1 DNA methyltransferase
    • Vilkaitis, G., Suetake, I., Klimasauskas, S., and Tajima, S. 2005. Processive methylation of hemimethylated CpG sites by mouse Dnmt1 DNA methyltransferase. J. Biol. Chem. 280:64-72.
    • (2005) J. Biol. Chem. , vol.280 , pp. 64-72
    • Vilkaitis, G.1    Suetake, I.2    Klimasauskas, S.3    Tajima, S.4
  • 74
    • 0034046040 scopus 로고    scopus 로고
    • Transcriptional activation of transforming growth factor a by estradiol: Requirement for both a GC-rich site and an estrogen response element half-site
    • Vyhlidal, C., Samudio, I., Kladde, M.P., and Safe, S. 2000. Transcriptional activation of transforming growth factor a by estradiol: Requirement for both a GC-rich site and an estrogen response element half-site. J. Mol. Endocrinol. 24:329-338.
    • (2000) J. Mol. Endocrinol. , vol.24 , pp. 329-338
    • Vyhlidal, C.1    Samudio, I.2    Kladde, M.P.3    Safe, S.4
  • 76
    • 77954842322 scopus 로고    scopus 로고
    • Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes
    • Wu, H., Coskun, V., Tao, J.F., Xie, W., Ge, W.H., Yoshikawa, K., Li, E., Zhang, Y., and Sun, Y.E. 2010. Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes. Science 329:444-448.
    • (2010) Science , vol.329 , pp. 444-448
    • Wu, H.1    Coskun, V.2    Tao, J.F.3    Xie, W.4    Ge, W.H.5    Yoshikawa, K.6    Li, E.7    Zhang, Y.8    Sun, Y.E.9
  • 77
    • 84984766752 scopus 로고    scopus 로고
    • Cytosine methylation targeted to pre-determined sequences
    • Xu, G.L. and Bestor, T.H. 1997. Cytosine methylation targeted to pre-determined sequences. Nat. Genet. 17:376-378.
    • (1997) Nat. Genet. , vol.17 , pp. 376-378
    • Xu, G.L.1    Bestor, T.H.2
  • 78
    • 0032169570 scopus 로고    scopus 로고
    • Cloning, characterization and expression of the gene coding for a cytosine-5-DNA methyltransferase recognizing GpC
    • Xu,M., Kladde,M.P.,Van Etten, J.L., and Simpson, R.T. 1998. Cloning, characterization and expression of the gene coding for a cytosine-5-DNA methyltransferase recognizing GpC. Nucleic Acids Res. 26:3961-3966.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 3961-3966
    • Xu, M.1    Kladde, M.P.2    Van Etten, J.L.3    Simpson, R.T.4
  • 79
    • 0031594292 scopus 로고    scopus 로고
    • Gal4p-mediated chromatin remodeling depends on binding site position in nucleosomes but does not require DNA replication
    • Xu, M., Simpson, R.T., and Kladde, M.P. 1998b. Gal4p-mediated chromatin remodeling depends on binding site position in nucleosomes but does not require DNA replication. Mol. Cell. Biol. 18:1201-1212.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 1201-1212
    • Xu, M.1    Simpson, R.T.2    Kladde, M.P.3
  • 80
    • 33845880624 scopus 로고    scopus 로고
    • Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
    • Zilberman, D., Gehring, M., Tran, R.K., Ballinger, T., and Henikoff, S. 2007. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat. Genet. 39:61-69.
    • (2007) Nat. Genet. , vol.39 , pp. 61-69
    • Zilberman, D.1    Gehring, M.2    Tran, R.K.3    Ballinger, T.4    Henikoff, S.5


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