메뉴 건너뛰기




Volumn 155, Issue , 2013, Pages 85-91

Transferability, polymorphism and effectiveness for genetic mapping of the pummelo (citrus grandis osbeck) est-ssr markers

Author keywords

Citrus; EST SSR; Expressed Sequence Tag (EST); Pummelo

Indexed keywords

COMMERCIAL SPECIES; CULTIVATION; FRUIT; GENETIC ANALYSIS; GENETIC MARKER; GENETIC VARIATION; PHYLOGENETICS; PHYLOGENY; POLYMORPHISM; TAXONOMY;

EID: 84876338336     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2013.02.024     Document Type: Article
Times cited : (13)

References (49)
  • 1
    • 0001161127 scopus 로고
    • A numerical taxonomic study of affinity relationships in cultivated Citrus and its close relatives
    • Barrett H.C., Rhodes A.M. A numerical taxonomic study of affinity relationships in cultivated Citrus and its close relatives. Syst. Bot. 1976, 1:105-136.
    • (1976) Syst. Bot. , vol.1 , pp. 105-136
    • Barrett, H.C.1    Rhodes, A.M.2
  • 2
    • 79960388528 scopus 로고    scopus 로고
    • Comparative analysis of genetic diversity in Citrus germplasm collection using AFLP, SSAP, SAMPL and SSR markers
    • Biswas M.K., Chai L.J., Amar M.H., Zhang X., Deng X.X. Comparative analysis of genetic diversity in Citrus germplasm collection using AFLP, SSAP, SAMPL and SSR markers. Sci. Hortic. 2011, 129:798-803.
    • (2011) Sci. Hortic. , vol.129 , pp. 798-803
    • Biswas, M.K.1    Chai, L.J.2    Amar, M.H.3    Zhang, X.4    Deng, X.X.5
  • 3
    • 84864281073 scopus 로고    scopus 로고
    • Generation, functional analysis and utility of Citrus grandis EST from a flower-derived cDNA library
    • Biswas M.K., Chai L.J., Xu Q., Deng X.X. Generation, functional analysis and utility of Citrus grandis EST from a flower-derived cDNA library. Mol. Biol. Rep. 2012, 39:7221-7235.
    • (2012) Mol. Biol. Rep. , vol.39 , pp. 7221-7235
    • Biswas, M.K.1    Chai, L.J.2    Xu, Q.3    Deng, X.X.4
  • 5
    • 76349095544 scopus 로고    scopus 로고
    • Utility of RAPD, ISSR, IRAP and REMAP markers for the genetic analysis of Citrus spp
    • Biswas M.K., Xu Q., Deng X.X. Utility of RAPD, ISSR, IRAP and REMAP markers for the genetic analysis of Citrus spp. Sci. Hortic. 2010, 124:254-261.
    • (2010) Sci. Hortic. , vol.124 , pp. 254-261
    • Biswas, M.K.1    Xu, Q.2    Deng, X.X.3
  • 7
    • 54049100747 scopus 로고    scopus 로고
    • Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense
    • Castillo A., Budak H., Varshney R., Dorado G., Graner A., Hernandez P. Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense. BMC Plant Biol. 2008, 8:97.
    • (2008) BMC Plant Biol. , vol.8 , pp. 97
    • Castillo, A.1    Budak, H.2    Varshney, R.3    Dorado, G.4    Graner, A.5    Hernandez, P.6
  • 11
  • 12
    • 58549095442 scopus 로고    scopus 로고
    • Development of chickpea EST-SSR markers and analysis of allelic variation across related species
    • Choudhary S., Sethy N.K., Shokeen B., Bhatia S. Development of chickpea EST-SSR markers and analysis of allelic variation across related species. Theor. Appl. Genet. 2009, 118:591-608.
    • (2009) Theor. Appl. Genet. , vol.118 , pp. 591-608
    • Choudhary, S.1    Sethy, N.K.2    Shokeen, B.3    Bhatia, S.4
  • 13
    • 34548336902 scopus 로고    scopus 로고
    • Development of genetic maps of the citrus varieties 'Murcott' tangor and 'Pera' sweet orange by using fluorescent AFLP markers
    • De Oliveira A.C., Bastianel M., Cristofani-Yaly M., do Amaral A.M., Machado M.A. Development of genetic maps of the citrus varieties 'Murcott' tangor and 'Pera' sweet orange by using fluorescent AFLP markers. J. Appl. Genet. 2007, 48:219-231.
    • (2007) J. Appl. Genet. , vol.48 , pp. 219-231
    • De Oliveira, A.C.1    Bastianel, M.2    Cristofani-Yaly, M.3    do Amaral, A.M.4    Machado, M.A.5
  • 14
    • 0000250265 scopus 로고
    • Measures of the amount of ecologic association between species
    • Dice L.R. Measures of the amount of ecologic association between species. Ecology 1945, 26:297-302.
    • (1945) Ecology , vol.26 , pp. 297-302
    • Dice, L.R.1
  • 17
    • 0031804602 scopus 로고    scopus 로고
    • Phylogenetic relationships within the genus Citrus (Rutaceae) and related genera as revealed by RFLP and RAPD analysis
    • Federici C.T., Fang D.Q., Scora R.W., Roose M.L. Phylogenetic relationships within the genus Citrus (Rutaceae) and related genera as revealed by RFLP and RAPD analysis. Theor. Appl. Genet. 1998, 94:812-822.
    • (1998) Theor. Appl. Genet. , vol.94 , pp. 812-822
    • Federici, C.T.1    Fang, D.Q.2    Scora, R.W.3    Roose, M.L.4
  • 18
    • 23944433157 scopus 로고    scopus 로고
    • Mapping and characterization of new EST-derived microsatellites for potato (Solanum tuberosum L.)
    • Feingold S., Lloyd J., Norero N., Bonierbale M., Lorenzen J. Mapping and characterization of new EST-derived microsatellites for potato (Solanum tuberosum L.). Theor. Appl. Genet. 2005, 111:456-466.
    • (2005) Theor. Appl. Genet. , vol.111 , pp. 456-466
    • Feingold, S.1    Lloyd, J.2    Norero, N.3    Bonierbale, M.4    Lorenzen, J.5
  • 19
    • 2142776687 scopus 로고    scopus 로고
    • EST-derived microsatellites from Actinidia species and their potential for mapping
    • Fraser L.G., Harvey C.F., Crowhurst R.N., De Silva H.N. EST-derived microsatellites from Actinidia species and their potential for mapping. Theor. Appl. Genet. 2004, 108:1010-1016.
    • (2004) Theor. Appl. Genet. , vol.108 , pp. 1010-1016
    • Fraser, L.G.1    Harvey, C.F.2    Crowhurst, R.N.3    De Silva, H.N.4
  • 20
    • 0344152917 scopus 로고    scopus 로고
    • Analysis of microsatellites in major crops assessed by computational and experimental approaches
    • Gao L., Tang J., Li H., Jia J. Analysis of microsatellites in major crops assessed by computational and experimental approaches. Mol Breed. 2003, 12:245-261.
    • (2003) Mol Breed. , vol.12 , pp. 245-261
    • Gao, L.1    Tang, J.2    Li, H.3    Jia, J.4
  • 21
  • 22
    • 0034094869 scopus 로고    scopus 로고
    • The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat
    • Gupta P.K., Varshney R.K. The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica 2000, 113:163-185.
    • (2000) Euphytica , vol.113 , pp. 163-185
    • Gupta, P.K.1    Varshney, R.K.2
  • 23
    • 79960033518 scopus 로고    scopus 로고
    • Mining and validating grape (Vitis L.) ESTs to develop EST-SSR markers for genotyping and mapping
    • Huang H., Lu J., Ren Z., Hunter W., Dowd S.E., Dang P. Mining and validating grape (Vitis L.) ESTs to develop EST-SSR markers for genotyping and mapping. Mol. Breed. 2011, 28:241-254.
    • (2011) Mol. Breed. , vol.28 , pp. 241-254
    • Huang, H.1    Lu, J.2    Ren, Z.3    Hunter, W.4    Dowd, S.E.5    Dang, P.6
  • 24
    • 0034946803 scopus 로고    scopus 로고
    • Differential distribution of simple sequence repeats in eukaryotic genome sequences
    • Katti M.V., Ranjekar P.K., Gupta V.S. Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol. Biol. Evol. 2001, 18:1161-1167.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1161-1167
    • Katti, M.V.1    Ranjekar, P.K.2    Gupta, V.S.3
  • 25
    • 0030002759 scopus 로고    scopus 로고
    • An evaluation of evolutionary constraints on microsatellite loci using null alleles
    • Lehmann T., Hawley W.A., Collins F.H. An evaluation of evolutionary constraints on microsatellite loci using null alleles. Genetics 1996, 144:1155-1163.
    • (1996) Genetics , vol.144 , pp. 1155-1163
    • Lehmann, T.1    Hawley, W.A.2    Collins, F.H.3
  • 26
    • 46049117054 scopus 로고    scopus 로고
    • Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping
    • Luro F., Costantino G., Terol J., Argout X., Allario T., Wincker P., Talon M., Ollitrault P., Morillon R. Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping. BMC Genomics 2008, 9:287.
    • (2008) BMC Genomics , vol.9 , pp. 287
    • Luro, F.1    Costantino, G.2    Terol, J.3    Argout, X.4    Allario, T.5    Wincker, P.6    Talon, M.7    Ollitrault, P.8    Morillon, R.9
  • 27
    • 0005814023 scopus 로고
    • Mathematical model for studying genetic variation in terms of restriction endonucleases
    • Nei M., Li W.H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. U.S.A. 1979, 76:5269-5273.
    • (1979) Proc. Natl. Acad. Sci. U.S.A. , vol.76 , pp. 5269-5273
    • Nei, M.1    Li, W.H.2
  • 29
    • 78249261809 scopus 로고    scopus 로고
    • Development of SSR markers from Citrus clementina (Rutaceae) BAC end sequences and interspecific transferability in Citrus
    • Ollitrault F., Terol J., Pina J.A., Navarro L., Talon M., Ollitrault P. Development of SSR markers from Citrus clementina (Rutaceae) BAC end sequences and interspecific transferability in Citrus. Am. J. Bot. 2010, 97:e124-e129.
    • (2010) Am. J. Bot. , vol.97
    • Ollitrault, F.1    Terol, J.2    Pina, J.A.3    Navarro, L.4    Talon, M.5    Ollitrault, P.6
  • 30
    • 35848950437 scopus 로고    scopus 로고
    • Isolation and characterization of microsatellite markers in the sacred lotus (Nelumbo nucifera Gaertn.)
    • Pan L., Quan Z., Li S., Liu H., Huang X., Ke W., Ding Y. Isolation and characterization of microsatellite markers in the sacred lotus (Nelumbo nucifera Gaertn.). Mol. Ecol. Notes 2007, 7:1054-1056.
    • (2007) Mol. Ecol. Notes , vol.7 , pp. 1054-1056
    • Pan, L.1    Quan, Z.2    Li, S.3    Liu, H.4    Huang, X.5    Ke, W.6    Ding, Y.7
  • 31
    • 0030183057 scopus 로고    scopus 로고
    • Polymorphism revealed by simple sequence repeats
    • Powell W., Machray G.C., Provan J. Polymorphism revealed by simple sequence repeats. Trends Plant Sci. 1996, 1:215-222.
    • (1996) Trends Plant Sci. , vol.1 , pp. 215-222
    • Powell, W.1    Machray, G.C.2    Provan, J.3
  • 32
    • 80052010208 scopus 로고    scopus 로고
    • Development of EST-SSR markers in castor bean (Ricinus communis L.) and their utilization for genetic purity testing of hybrids
    • Pranavi B., Sitaram G., Yamini K.N., Dinesh K.V. Development of EST-SSR markers in castor bean (Ricinus communis L.) and their utilization for genetic purity testing of hybrids. Genome 2011, 54:684-691.
    • (2011) Genome , vol.54 , pp. 684-691
    • Pranavi, B.1    Sitaram, G.2    Yamini, K.N.3    Dinesh, K.V.4
  • 34
    • 0038176522 scopus 로고    scopus 로고
    • Comparison between Poncirus and Citrus genetic linkage maps
    • Ruiz C., Asins M.J. Comparison between Poncirus and Citrus genetic linkage maps. Theor. Appl. Genet. 2003, 106:826-836.
    • (2003) Theor. Appl. Genet. , vol.106 , pp. 826-836
    • Ruiz, C.1    Asins, M.J.2
  • 35
    • 0343673769 scopus 로고    scopus 로고
    • A quick methodology to identify sexual seedlings in citrus breeding programs using SSR markers
    • Ruiz C., Paz Breto M., Asíns M.J. A quick methodology to identify sexual seedlings in citrus breeding programs using SSR markers. Euphytica 2000, 112:89-94.
    • (2000) Euphytica , vol.112 , pp. 89-94
    • Ruiz, C.1    Paz Breto, M.2    Asíns, M.J.3
  • 36
    • 4544324342 scopus 로고    scopus 로고
    • Tall fescue EST-SSR markers with transferability across several grass species
    • Saha M., Mian M., Eujayl I., Zwonitzer J., Wang L., May G. Tall fescue EST-SSR markers with transferability across several grass species. Theor. Appl. Genet. 2004, 109:783-791.
    • (2004) Theor. Appl. Genet. , vol.109 , pp. 783-791
    • Saha, M.1    Mian, M.2    Eujayl, I.3    Zwonitzer, J.4    Wang, L.5    May, G.6
  • 37
    • 0001093936 scopus 로고
    • On the history and origin of Citrus
    • Scora R.W. On the history and origin of Citrus. Bull. Torr. Bot. Club 1975, 102:369L 375.
    • (1975) Bull. Torr. Bot. Club , vol.102
    • Scora, R.W.1
  • 39
    • 34548295820 scopus 로고    scopus 로고
    • Production of two mandarin×trifoliate orange hybrid populations via embryo rescue with verification by SSR analysis
    • Tan M.L., Song J.K., Deng X.X. Production of two mandarin×trifoliate orange hybrid populations via embryo rescue with verification by SSR analysis. Euphytica 2007, 157:155.
    • (2007) Euphytica , vol.157 , pp. 155
    • Tan, M.L.1    Song, J.K.2    Deng, X.X.3
  • 40
    • 0021770546 scopus 로고
    • Simple sequences are ubiquitous repetitive components of eukaryotic genomes
    • Tautz D., Renz M. Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Res. 1984, 12:4127-4138.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 4127-4138
    • Tautz, D.1    Renz, M.2
  • 41
    • 0033858199 scopus 로고    scopus 로고
    • Microsatellites in different eukaryotic genomes survey and analysis
    • Tóth G., Gáspári Z., Jurka J. Microsatellites in different eukaryotic genomes survey and analysis. Genome Res. 2000, 10:967-981.
    • (2000) Genome Res. , vol.10 , pp. 967-981
    • Tóth, G.1    Gáspári, Z.2    Jurka, J.3
  • 42
    • 67349087965 scopus 로고    scopus 로고
    • Genetic diversity and relationships within Citrus and related genera based on sequence related amplified polymorphism markers (SRAPs)
    • Uzun A., Yesiloglu T., Aka-Kacar Y., Tuzcu O., Gulsen O. Genetic diversity and relationships within Citrus and related genera based on sequence related amplified polymorphism markers (SRAPs). Sci. Hortic. 2009, 121:306-312.
    • (2009) Sci. Hortic. , vol.121 , pp. 306-312
    • Uzun, A.1    Yesiloglu, T.2    Aka-Kacar, Y.3    Tuzcu, O.4    Gulsen, O.5
  • 43
    • 11344276529 scopus 로고    scopus 로고
    • Genic microsatellite markers in plants: features and applications
    • Varshney R.K., Graner A., Sorrells M.E. Genic microsatellite markers in plants: features and applications. Trends Biotechnol. 2005, 23:48-55.
    • (2005) Trends Biotechnol. , vol.23 , pp. 48-55
    • Varshney, R.K.1    Graner, A.2    Sorrells, M.E.3
  • 44
    • 0038207953 scopus 로고    scopus 로고
    • Mapping freeze tolerance quantitative trait loci in a Citrus grandis×Poncirus trifoliata F1 pseudo-testcross using molecular markers
    • Weber C.A., Moore G.A., Deng Z., Gmitter F.G. Mapping freeze tolerance quantitative trait loci in a Citrus grandis×Poncirus trifoliata F1 pseudo-testcross using molecular markers. J. Am. Soc. Hort. Sci. 2003, 128:508-514.
    • (2003) J. Am. Soc. Hort. Sci. , vol.128 , pp. 508-514
    • Weber, C.A.1    Moore, G.A.2    Deng, Z.3    Gmitter, F.G.4
  • 45
    • 80052825742 scopus 로고    scopus 로고
    • Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers
    • Wei W., Qi X., Wang L., Zhang Y., Hua W., Li D., Lv H., Zhang X. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. BMC Genomics 2011, 12:451.
    • (2011) BMC Genomics , vol.12 , pp. 451
    • Wei, W.1    Qi, X.2    Wang, L.3    Zhang, Y.4    Hua, W.5    Li, D.6    Lv, H.7    Zhang, X.8
  • 47
    • 79751533516 scopus 로고    scopus 로고
    • Development, characterization, and cross-species/genera transferability of SSR markers for rubber tree (Hevea brasiliensis)
    • Yu F., Wang B.H., Feng S.P., Wang J.Y., Li W.G., Wu Y.T. Development, characterization, and cross-species/genera transferability of SSR markers for rubber tree (Hevea brasiliensis). Plant Cell Rep. 2011, 30:335-344.
    • (2011) Plant Cell Rep. , vol.30 , pp. 335-344
    • Yu, F.1    Wang, B.H.2    Feng, S.P.3    Wang, J.Y.4    Li, W.G.5    Wu, Y.T.6
  • 48
    • 84865538497 scopus 로고    scopus 로고
    • Development and validation of genic-SSR markers in sesame by RNA-seq
    • Zhang H., Wei L., Miao H., Zhang T., Wang C. Development and validation of genic-SSR markers in sesame by RNA-seq. BMC Genomics 2012, 13:316.
    • (2012) BMC Genomics , vol.13 , pp. 316
    • Zhang, H.1    Wei, L.2    Miao, H.3    Zhang, T.4    Wang, C.5
  • 49
    • 0013331829 scopus 로고
    • Numerical chemotaxonomical study on Citrus plants cultivated in China
    • Zhu L.W. Numerical chemotaxonomical study on Citrus plants cultivated in China. Acta Phytotaxonom. Sin. 1988, 26:353-361.
    • (1988) Acta Phytotaxonom. Sin. , vol.26 , pp. 353-361
    • Zhu, L.W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.