Utility of RAPD, ISSR, IRAP and REMAP markers for the genetic analysis of Citrus spp.

Scientia Horticulturae

Volumn 124, Issue 2, 2010, Pages 254-261

  Biswas, Manosh Kumar ^a   Xu, Qiang ^a   Deng, Xiu xin ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

Citrus spp.; Genetic diversity; Linkage; Molecular marker; Polymorphism; Segregation

Indexed keywords

DICOTYLEDON; EVERGREEN TREE; FRUIT; GENETIC ANALYSIS; GENETIC MARKER; GENOTYPE; GERMPLASM; PHYLOGENETICS; POLYMORPHISM;

CITRUS; CITRUS SINENSIS; PONCIRUS TRIFOLIATA;

EID: 76349095544     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2009.12.013     Document Type: Article

References (32)

1. Abkenar A.A., Isshiki S., and Tashiro Y. Phylogenetic relationships in the "true citrus fruit trees" revealed by PCR-RFLP analysis of cpDNA. Sci. Hortic. 102 (2004) 233-242
2. Belaj A., Satovic Z., Cipriani G., Baldoni L., Testolin R., Rallo L., and Trujillo I. Comparative study of the discriminating capacity of RAPD, AFLP and SSR markers and of their effectiveness in establishing genetic relationships in olive. Theor. Appl. Genet. 107 (2003) 736-744
3. Breto M.P., Ruiz C., Pina J.A., and Asíns M.J. The diversification of Citrus clementina Hort. Ex Tan., a vegetatively propagated crop species. Mol. Phylogenet. Evol. 21 (2001) 285-293
4. Cai Q., Guy C.L., and Moore G.A. Extension of the linkage map in Citrus using random amplified polymorphic DNA (RAPD) markers and RFLP mapping of cold-acclimation-responsive loci. Theor. Appl. Genet. 89 (1994) 606-614
5. Cheng Y.J., Guo W.W., Yi H.L., Pang X.M., and Deng X.X. An efficient protocol for genomic DNA extraction from Citrus species. Plant Mol. Biol. Rep. 21 (2003) 177a-177g
6. Cristofani M., Machado M.A., and Grattapaglia D. Genetic linkage maps of Citrus sunki Hort. ex. Tan. and Poncirus trifoliata (L.) Raf. and mapping of citrus tristeza virus resistance gene. Euphytica 109 (1999) 25-32
7. Deng Z.N., Gentile A., Nicolosi E., Vardi A., and Tribulato E. Identification of in vivo and in vitro lemon mutants by RAPD markers. J. Hortic. Sci. 70 (1995) 117-125
8. Dice L.R. Measures of the amount of ecologic association between species. Ecology 26 (1945) 297-302
9. Fang D., and Roose M.L. Identification of closely related citrus cultivars with inter-simple sequence repeats markers. Theor. Appl. Genet. 95 (1997) 408-417
10. Fang D., Roose M.L., Krueger R.R., and Federici C.T. Fingerprinting trifoliate orange germplasm accessions with isozymes, RFLP's, and inter-simple sequence repeat markers. Theor. Appl. Genet. 97 (1997) 211-219
11. Fang D.Q., Federici C.T., and Roose M.L. A high-resolution linkage map of the citrus tristeza virus resistance gene region in Poncirus trifoliata, L. Raf. Genetics 150 (1998) 883-890
12. Federici C.T., Fang D.Q., Scora R.W., and Roose M.L. Phylogenetic relationships within the genus Citrus, Rutaceae and related genera as revealed by RFLP and RAPD analysis. Theor. Appl. Genet. 96 (1998) 812-822
13. Guo D., Zhang H., and Luo Z. Genetic relationship of Diospyros kaki Thunb. and related species revealed by IRAP and REMAP analysis. Plant Sci. 170 (2006) 528-533
14. Jones C.J., Edwards K.J., Castaglione S., Winfield M.O., Sala F., van de Wiel C., Bredemeijer G., Vosman B., Matthes M., Daly A., Brettschneider R., Bettini P., Buiatti M., Maestri E., Malcevschi A., Marmiroli N., Aert R., Volckaert G., Rueda J., Linacero R., Vazquez A., and Karp A. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Mol. Breed. 3 (1997) 381-390
15. Kalendar R., Grob T., Regina M.T., Suoniemi A., and Schulman A.H. IRAP and REMAP: two new retrotransposon-based DNA fingerprinting techniques. Theor. Appl. Genet. 98 (1999) 704-711
16. Karp A., Edwards K.J., Bruford M., Funk S., Vosman B., Morgante M., Seberg O., Kremer A., Boursot P., Arctander P., Tautz D., and Hewitt G.M. Molecular technologies for biodiversity evaluation: opportunities and challenges. Nat. Biotechnol. 15 (1997) 625-628
17. Karp, A., Kresovich, S., Bhat, K.V., Ayad, W.C., Hodgkin, T., 1997b. Molecular tools in plant genetic resources conservation: a guide to the technologies. IPGRI Technical Bulletin No. 2. International Plant Genetic Resource Institute, Rome, Italy.
18. Karp A., Seberg O., and Buiatti M. Molecular techniques in the assessment of botanical diversity. Ann. Bot. 78 (1996) 143-149
19. Khan I.A., and Roose M.L. Frequency and characteristics of nucellar and zygotic seedling in three cultivars of trifoliate orange. J. Am. Soc. Hortic. Sci. 113 (1988) 105-110
20. Mantel N. The detection of disease clustering and a generalized regression approach. Cancer Res. 27 (1967) 209-220
21. Pang X.M., Chun G.H., and Deng X.X. Phylogenetic relationships within Citrus and its related genera as inferred from AFLP markers. Genet. Res. Crop Evol. 54 (2007) 429-436
22. Parker P.G., Snow A.A., Schug M.D., Booton G.C., and Fuerst P.A. What molecules can tell us about population: choosing and using a molecular marker. Ecology 79 (1998) 361-382
23. Rohlf F.J. NTSYS-pc: numerical taxonomy and multivariate analysis system, version 2.1 (2000), Exeter Software, New York
24. Sankar A.A., and Moore G.A. Evolution of inter-simple sequence repeat analysis from mapping in Citrus and extension of the genetic linkage map. Thero. Appl. Genet. 102 (2001) 206-214
25. Scariot V., De keyser E., Handa T., and De Riek J. Comparative study of the discriminating capacity and effectiveness of AFLP, STMS and EST markers in assessing genetic relationships among evergreen azales. Plant Breed. 126 (2007) 207-212
26. Schlotterer C. The evolution of molecular markers-just a matter of fashion?. Nat. Rev. Genet. 5 (2004) 63-69
27. Sokal R.R., and Rohlf F.J. The comparison of dendrograms by objective methods. Taxon 11 (1962) 30-40
28. Spooner, D., Treuren, V.R., de-Vicente, M.C., 2005. Molecular markers for genebank management. IPGRI Technical Bulletin No. 10.
29. Torres A.M., Soost R.K., and Mau-Lastovicka T. Citrus isosymes. J. Hered. 73 (1982) 335-339
30. Uzuan A., Yesiloglu T., Aka-Kacar Y., Tuzcu O., and Gulsen O. Genetic diversity and relationships within Citrus and related genera based on sequence related amplified polymorphism markers (SRAPs). Sci. Hortic. 121 (2009) 306-312
31. Wei, J., 2007. Characterization of retrotransposon elements and development of related molecular markers in citrus, PhD Thesis, Huazhong Agricultural University, Wuhan, China.
32. Whitkus R., Doebley J., and Wendel J.F. Nuclear DNA markers in systematic and evolution. In: Phillip R.L., and Vasil I.K. (Eds). DNA Based Markers in Plants. Advances in Cellular and Molecular Biology of Plants vol. 1 (1994), Kluwer Academic Publishers, Dordrecht, The Netherlands 116-141