Development of genetic maps of the citrus varieties 'Murcott' tangor and 'Pêra' sweet orange by using fluorescent AFLP markers

Journal of Applied Genetics

Volumn 48, Issue 3, 2007, Pages 219-231

  De Oliveira, Antonio Carlos ^a   Bastianel, Marinês ^b   Cristofani Yaly, Mariângela ^b,d   Do Amaral, Alexandre Morais ^b,c   Machado, Marcos Antonio ^b  

^a UNIVERSIDADE ESTADUAL DO SUDOESTE DA BAHIA   (Brazil)

^b EMBRAPA CERRADOS   (Brazil)

^c EMBRAPA RECURSOS GENÉTICOS E BIOTECNOLOGIA   (Brazil)

^d INSTITUTO AGRONÔMICO   (Brazil)

Author keywords

Citrus reticulata; Citrus sinensis; Hybrids; JoinMap; Mapmaker; Mapping

Indexed keywords

CITRUS; CITRUS NOBILIS; CITRUS RETICULATA; CITRUS SINENSIS; PERA; XYLELLA FASTIDIOSA;

EID: 34548336902     PISSN: 12341983     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF03195216     Document Type: Article

References (53)

1. Amaro AA, Maia ML, Gonzalez MA, 1997. Efeitos econômicos decorrentes da clorose variegada dos citros. In: Donadio LC, Moreira CS, eds. Clorose Variegada dos Citros, Bebedouro: 162.
2. Araújo EF, Queiroz LP, Machado MA, 2003. What is Citrus? Taxonomic implications from a study of cp-DNA evolution in the tribe Citreae (Rutaceae, subfamily Aurantioideae). Organisms Diversity Evolution 3: 55-62.
3. Ayres M, Ayres Júnior M, Ayres DL, Santos AS, 2000. BioEstat: aplicaçoes estatísticas nas áreas das cincias biológicas e médicas. Publicaçoes Avulsas Mamirauá. Belém/PA: Sociedade Civil Mamirauá: 272.
4. Baccarcia G, Albertini E, Tavoletti S, Falcinelli M, Veronesi F, 1999. AFLP fingerprinting in Medicago spp.: its development and application in linkage mapping. Plant Breeding 118: 335-340.
5. Bert PF, Charmet G, Sourdille P, Hayward MD, Balfourier F, 1999. A high-density molecular map for ryegrass (Lolium perenne) using AFLP markers. Theor Appl Genet 99: 445-452.
6. Buetow KH, 1991. Influence of aberrant observations on high-resolution linkage analysis outcomes. Am J Hum Genet 49: 985-994.
7. Cai Q, Guy CL, Moore GA, 1994. Extension of the linkage map in Citrus using random amplified polymorphic DNA (RAPD) markers and RFLP mapping of cold-acclimation-responsive loci. Theor Appl Genet 89: 606-614.
8. Castiglioni P, Ajmone-Marsan P, Van Wijk R, Motto M, 1998. AFLP markers in a molecular linkage map of maize: codominant scoring and linkage group distribution. Theor Appl Genet 99: 425-431.
9. Chang CJ, Garnier M, Zreik L, Rossetti V, Bové JM, 1993. Culture and serological detection of the xylem-limited bacterium causing citrus variegated chlorosis and its identification as a strain of Xylella fastidiosa. Curr Microbiol 27: 137-142.
10. Cristofani M, Machado MA, Grattapaglia D, 1999. Genetic linkage maps of Citrus sunki Hort. ex. Tan. and Poncirus trifoliata (L.) Raf. and mapping of citrus tristeza virus resistance gene. Euphytica 109: 25-32.
11. De Simone M, Russo MP, Puleo G, Marsan PA, Lorenzoni C, Marocco A, Recupero GR, 1998. Construction of genetic maps for Citrus aurantium and C. latipes based on AFLP, RAPD and RFLP markers. Fruits 53: 383-390.
12. Deng RE, Huang SY, Xiao S, Gmitter CM, 1997. Development and characterization of SCAR markers linked to the citrus tristeza virus resistance gene from Poncirus trifoliata. Genome 40: 697-704.
13. Dettori MT, Quarta R, Verde I, 2001. A peach linkage map integrating RFLPs, SSRs, RAPDs, and morphological markers. Genome 44: 783-790.
14. Durham RE, Liou PC, Gmitter FG, Moore GA, 1992. Linkage of restriction fragment length polymorphisms and isozymes in Citrus. Theor Appl Genet 84: 39-48.
15. Fang DQ, Federici CT, Roose ML, 1997. Development of molecular markers linked to a gene controlling fruit acidity in citrus. Genome 40: 841-849.
16. Flament MH, Kebe I, Clément D, Pieretti I, Risterucci AM, N'Goran JAK, Cilas C, 2001. Genetic mapping of resistance factors to Phytophthora palmivora in cocoa. Genome 44: 79-85.
17. Gadish I, Zamir D, 1986. Differential zygotic abortion in an interspecific Lycopersicon cross. Genome 29: 156-159.
18. García R, Asíns MJ, Forner J, Carbonell EA, 1999. Genetic analysis of apomixis in Citrus and Poncirus by molecular markers. Theor Appl Genet 99: 511-518.
19. García MR, Asíns MJ, Carbonell EA, 2000. QTL analysis of yield and seed number in Citrus. Theor Appl Genet 101: 487-493.
20. Giovannoni JJ, Wing RA, Ganal MW, Tanksley SD, 1991. Isolation of molecular markers from specific chromosomal intervals using DNA pools from existing mapping populations. Nucl Acids Res 19: 6553-6558.
21. Gmitter Jr FG, Xiao SY, Huang S, Hu X.L, Garnsey SM, Deng Z, 1996. A localized linkage map of the citrus virus resistance gene region. Theor Appl Genet 92: 688-695.
22. Guerra M, 1993. Cytogenetics of Rutaceae. V. High chromosomal variability in Citrus species revealed by CMA/DAPI staining. Heredity 71: 234-241.
23. Heun M, Kennedy E, Anderson JA, Lapitan NLV, Sorrells ME, 1991. Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare). Genome 34: 437-447.
24. Jarrell DC, Roose ML, Traugh SN, Kupper RS, 1992. A genetic maps of Citrus based on the segregation of isozymes and RFLPs in an intergeneric cross. Theor Appl Genet 84: 49-56.
25. Kijas JMH, Thomas MR, Fowler JCS, Roose ML, 1997. Integration of trinucleotide microsatellites into a linkage map of Citrus. Theor Appl Genet 94: 701-706.
26. Kosambi DD, 1944. The estimation of map distance from recombination values. Ann Eugen 12: 172-175.
27. Krutovskii KV, Vollmer SS, Soresen FC, Adams WT, Knapp SJ, Strauss SH, 1998. RAPD genome maps of Douglas-fir. J Hered 3: 197-205.
28. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L, 1987. MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
29. Laranjeira FF, Pompeu Jr J, Harakava R, Figueiredo JO, Carvalho AS, Coletta Filho HD, 1998. Cultivares e espécies cítricas hospedeiras de Xylella fastidiosa em condições de campo. Fitopatologia bras 23: 147-154.
30. Lespinasse D, Rodier-Goud M, Grivet L, Leconte A, Legnate H, Seguin MA, 2000. Saturated genetic linkage map of rubber tree (Hevea spp.) based on RFLP, AFLP, microsatellite, and isozyme markers. Theor Appl Genet 100: 127-138.
31. Ling P, Duncam LW, Deng Z, Dunn Z, Hu X, Huang S, Gmitter FG, 2000. Inheritance of citrus nematode resistance and its linkage with molecular markers. Theor Appl Genet 100: 1010-1017.
32. Liou PC, 1990. A molecular study of the citrus genome through restriction fragment length polymorphism and isozyme mapping. PhD thesis. University of Florida , Gainesville, FL: 143.
33. Lu ZX, Sosinski GL, Reighard WV, Baird WV, Abott AG, 1998. Construction of a genetic linkage map and identification of AFLP markers for resistance to root-knot nematodes in peach rootstocks. Genome 41: 199-207.
34. Luro F, Lorieux M, Laigret F, Bové JM, Ollitraut P, 1994. Genetic mapping of an intergeneric citrus hybrid using molecular markers. Fruits 49: 404-408.
35. Machado MA, Coletta Filho HD, Targon MLNP, Pompeu Juniror J, 1996. Genetic relationship of Mediterranean mandarins (Citrus deliciosa Tenore) using RAPD markers. Euphytica 92: 321-332.
36. Maliepaard C, Jansen J, van Ooijen JW, 1997. Linkage analysis in a full-sib family of an outbreeding plant species: overview and consequences for applications. Genet Res Camb 70: 236-250.
37. Nandi S, Subudhi PK, Senadhira D, Manigbas NL, Sen-Mandi S, Huang N, 1997. Mapping QTLs for submergence tolerance in rice by AFLP analysis and selective genotyping. Mol Gen Genet 255:1-8.
38. Nienhuis J, Helentjaris T, Slocum M, Ruggero B, Schaefer A, 1987. Restriction fragment length polymorphism analysis of loci associated with insect resistance in tomato. Crop Sci 27: 797-803.
39. Nikaido A, Yoshimaru H, Tsumura Y, Suyama Y, Murai M, Nagasaka K, 1999. Segregation distortion for AFLP markers in Cryptomeria japonica. Genes Genet Systems 74: 55-59.
40. Oliveira AC, García AN, Cristofani M, Machado MA, 2002. Identification of citrus hybrids through the combination of leaf apex morphology and SSR markers. Euphytica 128: 397-403.
41. Oliveira AC, 2003. Clorose variegada dos citros: quantificaç ǎo molecular do agente causal, avaliaçǎo de trocas gasosas de plantas infectadas e mapeamento de lócus de resistência quantitativa de citros à Xylella fastidiosa Wells (1987) com fAFLPs. PhD thesis. Universidade Estadual de Campinas, Campinas, SP: 287.
42. Roose ML, Schwarzacher T, Heslop-Harrison J, 1998. The chromosomes of Citrus and Poncirus species and hybrids: identification of characteristic chromosomes and physical mapping of rDNA loci using in situ hybridization and fluorochrome banding. J Hered 89: 83-86.
43. 2 population. Proc. Int. Soc. Citriculture 1: 210-213.
44. Ruiz C, Asins MJ, 2003. Comparison between Poncirus and Citrus genetic linkage maps. Theor Appl Genet 106: 826-836.
45. Sankar AA and Moore GA, 2001. Evaluation of inter-simple sequence repeat analysis for mapping in Citrus and extension of the linkage map. Theor Appl Gene 102: 206-214.
46. Shields DC, Collins A, Buetow KH, Morton NE, 1991. Error filtration, interference, and the human linkage map. Proc Natl Acad Sci USA 88: 6501-6505.
47. Soltis DE, Soltis PS, Doyle JJ, 1998. Molecular systematics of plants. II. DNA sequencing. Kluwer Academic Publishers. Norwell, Miss: 265-296.
48. - accumulation-related traits in an intergeneric BC1 progeny of Citrus and Poncirus under saline and nonsaline environments. Genome 42: 692-705.
49. 1 progeny of Citrus and Poncirus under saline and nonsaline environments. Genome 42: 1020-1029.
50. Van Ooijen JW, Voorrips RE, 2001. JoinMap™ version 3.0; software for the calculation of genetic linkage maps. Wageningen: Plant Res Internat 2001: 51.
51. Wells JM, Raju BC, Hung H, Weisburg WG, Mandelco-Paul L, Brenner DJ, 1987. Xylella fastidiosa gen. nov., sp. nov: gram-negative, xylem-limited, fastidious plant bacteria related to Xanthomonas spp. Int J Syst Bacteriol 37: 136-143.
52. Zabeau M, 1993. Selective restriction fragment amplification: a general method for DNA fingerprinting. European Patent Application N 0534858 A1.
53. Zamir D, Tadmor Y, 1986. Unequal segregation of nuclear genes in plants. Bot Gaz 147: 355-358.