Genetic diversity and relationships within Citrus and related genera based on sequence related amplified polymorphism markers (SRAPs)

Scientia Horticulturae

Volumn 121, Issue 3, 2009, Pages 306-312

  Uzun, A ^a   Yesiloglu, T ^b   Aka Kacar, Y ^b   Tuzcu, O ^b   Gulsen, O ^c  

^a ALATA HORTICULTURAL RESEARCH INSTITUTE   (Turkey)

^b CUKUROVA UNIVERSITY   (Turkey)

^c ERCIYES UNIVERSITY   (Turkey)

Author keywords

Genetic resources; Molecular markers; Taxonomy

Indexed keywords

ANCESTRY; EVERGREEN TREE; GENETIC MARKER; GENETIC VARIATION; POLYMORPHISM; TAXONOMY;

CITRUS; CITRUS MAXIMA; CITRUS MEDICA; CITRUS RETICULATA;

EID: 67349087965     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2009.02.018     Document Type: Article

References (44)

1. Abkenar A.A., Isshiki S., and Tashiro Y. Phylogenetic relationships in the "true citrus fruit trees" revealed by PCR-RFLP analysis of cpDNA. Sci. Hortic. 102 (2004) 233-242
2. Abkenar A.A., Isshiki S., and Matsumoto R. Comparative analysis of organelle DNAs acid citrus grown in Japan using PCR-RFLP method. Genet. Res. Crop. Evol. 55 (2007) 487-492
3. Ahmad R., Potter D., and Southwick M. Genotyping of peach and nectarine cultivars with SSR and SRAP molecular markers. J. Am. Soc. Hort. Sci. 129 (2004) 204-210
4. Barkley N.A., Roose M.L., Krueger R.R., and Federici C.T. Assessing genetic diversity and population structure in a citrus germplasm collection utilizing simple sequence repeat markers (SSRs). Theor. Appl. Genet. 112 (2006) 1519-1531
5. Barrett H.C., and Rhodes A.M. A numerical taxonomic study of affinity relationships in cultivated Citrus and its close relatives. Syst. Bot. 1 (1976) 105-136
6. Budak H., Shearman R.C., Parmaksiz I., Gaussoin R.E., Riordan T.P., and Dweikat I. Molecular characterization of Buffalograss germplasm using sequence-related amplified polymorphism markers. Theor. Appl. Genet. 108 (2004) 328-334
7. Coletta-Filho H.D., Machado M.A., Targon M.L.P.N., Moreita M.C.P.Q.D.G., and Pompea Jr. J. Analysis of the genetic diversity among mandarins (Citrus spp.) using RAPD markers. Euphytica 102 (1998) 133-139
8. Corazza-Nunes M.J., Machado M.A., Nunes W.M.C., Cristofani M., and Targon M.L.P.N. Assessment of genetic variability in grapefruits (Citrus paradisi Macf.) and pummelos (C. maxima Burm. Merr.) using RAPD and SSR markers. Euphytica 126 (2002) 169-176
9. Dice L.R. Measures of the amount of ecologic association between species. Ecology 26 (1945) 297-302
10. Doyle J.J., and Doyle J.L. Isolation of plant DNA from fresh tissue. Focus 12 (1990) 13-15
11. Esposito M.A., Martin E.A., Cravero V.P., and Cointry E. Characterization of pea accessions by SRAP's markers. Sci. Hortic. 113 (2007) 329-335
12. Fang D.Q., and Roose M.L. Identification of closely related Citrus cultivars with inter-simple sequence repeat markers. Theor. Appl. Genet. 95 (1997) 408-417
13. Fang D.Q., Krueger R.R., and Roose M.L. Phylogenetic relationships among selected Citrus germplasm accessions revealed by inter-simple sequence repeat (ISSR) markers. J. Amer. Soc. Hort. 123 (1998) 612-617
14. Federici C.T., Fang D.Q., Scora R.W., and Roose M.L. Phylogenetic relationships within the genus Citrus (Rutaceae) and related genera as revealed by RFLP and RAPD analysis. Theor. Appl. Genet. 96 (1998) 812-822
15. Ferriol M., Pico B., and Nuez F. Genetic diversity of a germplasm collection of Cucurbita pepo using SRAP and AFLP markers. Theor. Appl. Genet. 107 (2003) 271-282
16. Ferriol M., Pico B., and Nuez F. Morphological and molecular diversity of a colection of Cucurbita maxima Landraces. J. Amer. Soc. Hort. Sci. 129 (2004) 60-69
17. Gulsen O., and Roose M.L. The origin of Interdonato lemon inferred from cpRFLP, SSR, isozyme and ISSR markers. Proc. Int. Soc. Citricult. IX Congr. (2000) 158-159
18. Gulsen O., and Roose M.L. Chloroplast and nuclear genome analysis of the parentage of lemons. J. Am. Soc. Hort. Sci. 126 (2001) 210-215
19. Gulsen O., and Roose M.L. Lemons: diversity and relationships with selected citrus genotypes as measured with nuclear genome markers. J. Am. Soc. Hort. Sci. 126 (2001) 309-317
20. Gulsen O., Shearman R.C., Vogel K.P., Lee D.J., Baenziger P.S., Heng-Moss T.M., and Budak H. Nuclear genome diversity and relationships among naturally occurring buffalograss genotypes determined by SRAP markers. Hortscience 40 (2005) 537-541
21. Gulsen O., Karagul S., and Abak K. Diversity and relationships among Turkish okra germplasm by SRAP and phenotypic marker polymorphism. Biologia 62 (2007) 141-145
22. Guo D.L., and Luo Z.R. Genetic relationships of some PCNA persimmons (Diospyros kaki Thunb.) from China and Japan revealed by SRAP analysis. Genet. Res. Crop Evol. 53 (2006) 1603-1797
23. Herrero R., Asins M.J., Carbonell A.E., and Navarro L. Genetic diversity in the orange subfamily Aurantioideae. I. Intraspecies and intragenus genetic variability. Theor. Appl. Genet. 92 (1996) 599-609
24. Hirai M., Kozaki I., and Kajiura I. Isozyme analysis and phylogenic relationship of Citrus. Jpn. J. Breed. 36 (1986) 377-389
25. Hodgson R.W. Horticultural varieties of citrus. In: Reuther W., Webber H.J., and Batchelor L.D. (Eds). The Citrus Industry vol. 1 (1967), University of California Press, Berkeley 431-591
26. Isaac E. Influence of religion on the spread of Citrus. Science 129 (1959) 179-186
27. Li G., and Quiros C.F. Sequence-related amplified polymorphism (SRAP) a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor. Appl. Genet. 103 (2001) 455-461
28. Luro F., Rist D., and Ollitrault P. Sequence tagged microsatellites polymorphism: an alternative tool for cultivar identification and evaluation of genetic relationships in Citrus. Proc. Int. Soc. Citricult. IX. Congr. (2000) 170-171
29. Mantel N. The detection of disease clustering and a generalized regression approach. Cancer Res. 27 (1967) 209-220
30. Morton C.M., Grant M., and Blackmore S. Phylogenic relationships of the Aurantioideae inferred from chloroplast DNA sequence data. Am. J. Bot. 90 (2003) 1463-1469
31. Mabberley D.J. Australian Citreae with notes on other Aurantioideae (Rutaceae). Telopea 74 (1998) 333-344
32. Nicolosi E., Deng Z.N., Gentile A., La Malfa S., Continella G., and Tribulato E. Citrus phylogeny and genetic origin of important species as investigated by molecular markers. Theor. Appl. Genet. 100 (2000) 1155-1166
33. Novelli V.M., Machado M.A., and Lopes C.R. Isoenzymatic polymorphism in Citrus spp. and Poncirus trifoliata (L.)) Raf. (Rutaceae). Genet. Mol. Biol. 23 (2000) 1163-1168
34. Pang X.M., Hu C.G., and Deng X.X. Phylogenetic relationship within Citrus and related genera as inferred from AFLP markers. Genet. Res. Crop. Evol. 54 (2007) 429-436
35. Pritchard J., Stephens M., and Donnelly P. Inference of population structure using multilocus genotype data. Genetics 155 (2000) 945-959
36. Rohlf, F.J., 1993. NTSYS-pc, numerical taxonomy and multivarite analysis system, version 1.18. New York, Exeter, Setauket.
37. Ruiz J.J., and Garcia-Martinez S. Genetic variability and relationship of closely related Spanish traditional cultivars of tomato as detected by SRAP and SSR markers. J. Am. Soc. Hort. Sci. 130 (2005) 88-94
38. Scora R.W. On the history and origin of Citrus. Bull. Torr. Bot. Club 102 (1975) 369-375
39. Scora R.W. Biochemistry, taxonomy and evolution of modern cultivated Citrus. In: Goren R.K., and Mendel K. (Eds). Proc. 6th Int. Citrus Cong. vol. 1 (1988), Margraf Publishers, Weikersheim, Germany 277-289
40. Smith J.S.C., Chin E.C.L., Shu H., Smith O.S., Wall S.J., Senior M.L., Mitchel S.E., Kresorich S., and Tiegle J. An evaluation of the utility of SSR loci as molecular markers in maize (Zea mays L.): comparisons with data from RFLPs and pedigree. Theor. Appl. Genet. 95 (1997) 163-173
41. Swingle W.T., and Reece P.C. The botany of citrus and its wild relatives. In: Reuther W., Webber H.J., and Batchelor L.D. (Eds). The Citrus Industry vol. 1 (1967), University of California Press, Berkeley, CA, USA 389-390
42. Tanaka T. Fundamental discussion of Citrus classification. Stud. Citrol. 14 (1977) 1-6
43. Torres A.M., Soost R.K., and Diedenhofen U. Leaf isosymes as genetic markers in Citrus. Am. J. Bot. 65 (1978) 869-881
44. Yamamoto M., Abkenar A.A., Matsumoto R., Kubo T., and Tominaga S. CMA staining analysis of chromosomes in several species of Aurantioideae. Genet. Res. Crop Evol. (2008) 10.1007/s10722-008-9317