-
1
-
-
0028265990
-
Dibasic (amidinoaryl) propanoic acid derivatives as novel blood coagulation factor Xa inhibitors
-
T. Nagahara, Y. Yokoyama, K. Inamura, S. Katakura, S. Komoriya, H. Yamaguchi, T. Hara, and M. Iwamoto, Dibasic (amidinoaryl) propanoic acid derivatives as novel blood coagulation factor Xa inhibitors, J. Med. Chem. 37 (1994), pp. 1200-1207.
-
(1994)
J. Med. Chem.
, vol.37
, pp. 1200-1207
-
-
Nagahara, T.1
Yokoyama, Y.2
Inamura, K.3
Katakura, S.4
Komoriya, S.5
Yamaguchi, H.6
Hara, T.7
Iwamoto, M.8
-
2
-
-
79960647787
-
Recent progress in anticoagulant therapy: Oral direct inhibitors of thrombin and factor Xa
-
K.A. Bauer, Recent progress in anticoagulant therapy: Oral direct inhibitors of thrombin and factor Xa, J. Thromb. Haemost. 9 (2011), pp. 12-19.
-
(2011)
J. Thromb. Haemost.
, vol.9
, pp. 12-19
-
-
Bauer, K.A.1
-
3
-
-
0031412416
-
State-of-The-art review: Factor Xa versus factor IIa inhibitors
-
B. Kaiser, State-of-the-art review: Factor Xa versus factor IIa inhibitors, Clin. Appl. Thromb./Hemost. 3 (1997), pp. 16-24.
-
(1997)
Clin. Appl. Thromb./Hemost.
, vol.3
, pp. 16-24
-
-
Kaiser, B.1
-
4
-
-
0030097984
-
A novel synthetic, selective and orally active inhibitor of factor Xa: In vitro and in vivo studies
-
J. Herbert, A. Bernat, F. Dol, J. Herault, B. Crepon, and J. Lormeau, A novel, synthetic, selective and orally active inhibitor of factor Xa: In vitro and in vivo studies, J. Pharmacol. Exp. Ther. 276 (1996), pp. 1030-1038.
-
(1996)
J. Pharmacol. Exp. Ther.
, vol.276
, pp. 1030-1038
-
-
Herbert, J.1
Bernat, A.2
Dol, F.3
Herault, J.4
Crepon, B.5
Lormeau, J.6
-
5
-
-
0001860753
-
Specific factor xa inhibitors cardiovascular thrombosis: Thrombocardiology and thromboneurology
-
M. Samama, J. Walenga, B. Kaiser, and J. Fareed, Specific factor Xa inhibitors, Cardiovascular Thrombosis: Thrombocardiology and Thromboneurology, Lippincott-Raven, Philadelphia, PA, 1998, pp. 173-188.
-
(1998)
Lippincott-Raven, Philadelphia, PA
, pp. 173-188
-
-
Samama, M.1
Walenga, J.2
Kaiser, B.3
Fareed, J.4
-
6
-
-
0018729826
-
Optimization of conditions for the catalytic effect of the factor IXa-factor VIII complex: Probable role of the complex in the amplification of blood coagulation
-
S. Elo?di and K. Varadi, Optimization of conditions for the catalytic effect of the factor IXa-factor VIII complex: Probable role of the complex in the amplification of blood coagulation, Thromb. Res. 15 (1979), pp. 617-629.
-
(1979)
Thromb. Res.
, vol.15
, pp. 617-629
-
-
Elodi, S.1
Varadi, K.2
-
7
-
-
24344448633
-
Direct thrombin inhibitors
-
M. Di Nisio, S. Middeldorp, and H.R. Bu ller, Direct thrombin inhibitors, N. Engl. J. Med. 353 (2005), pp. 1028-1040.
-
(2005)
N. Engl. J. Med.
, vol.353
, pp. 1028-1040
-
-
Di Nisio, M.1
Middeldorp, S.2
Bu Ller, H.R.3
-
8
-
-
84861337801
-
Studies of H4R antagonists using 3D-QSAR molecular docking and molecular dynamics
-
J. Liu, Y. Li, H.X. Zhang, S.W. Zhang, and L. Yang, Studies of H4R antagonists using 3D-QSAR, molecular docking and molecular dynamics, J. Mol. Model. 18 (2012), pp. 991-1001.
-
(2012)
J. Mol. Model.
, vol.18
, pp. 991-1001
-
-
Liu, J.1
Li, Y.2
Zhang, H.X.3
Zhang, S.W.4
Yang, L.5
-
9
-
-
42949179198
-
Current topics in computer-aided drug design
-
C.A. Taft, V.B. da Silva, and C.H.T.P. da Silva, Current topics in computer-aided drug design, J. Pharm. Sci. 97 (2008), pp. 1089-1098.
-
(2008)
J. Pharm. Sci.
, vol.97
, pp. 1089-1098
-
-
Taft, C.A.1
Da Silva, V.B.2
Da Silva, C.H.T.P.3
-
10
-
-
31944443335
-
Comparative study of factor Xa inhibitors using molecular docking/SVM/HQSAR/3D-QSAR methods
-
J. Sun, H.F. Chen, H.R. Xia, J.H. Yao, and B.T. Fan, Comparative study of factor Xa inhibitors using molecular docking/SVM/HQSAR/3D-QSAR methods, J. QSAR Comb. Sci. 25 (2006), pp. 25-45.
-
(2006)
J. QSAR Comb. Sci.
, vol.25
, pp. 25-45
-
-
Sun, J.1
Chen, H.F.2
Xia, H.R.3
Yao, J.H.4
Fan, B.T.5
-
11
-
-
18344364519
-
Structural requirements for factor Xa inhibition by 3-oxybenzamides with neutral P1 substituents: Combining X-ray crystallography3D-QSAR, and tailored scoring functions
-
H. Matter, D.W. Will, M. Nazare, H. Schreuder, V. Laux, and V. Wehner, Structural requirements for factor Xa inhibition by 3-oxybenzamides with neutral P1 substituents: Combining X-ray crystallography, 3D-QSAR, and tailored scoring functions, J. Med. Chem. 48 (2005), pp. 3290-3312.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 3290-3312
-
-
Matter, H.1
Will, D.W.2
Nazare, M.3
Schreuder, H.4
Laux, V.5
Wehner, V.6
-
12
-
-
0346996360
-
Analyses of activity for factor Xa inhibitors based on Monte Carlo simulations
-
D. Ostrovsky, M. Udier-Blagovic, and W.L. Jorgensen, Analyses of activity for factor Xa inhibitors based on Monte Carlo simulations, J. Med. Chem. 46 (2003), pp. 5691-5699.
-
(2003)
J. Med. Chem.
, vol.46
, pp. 5691-5699
-
-
Ostrovsky, D.1
Udier-Blagovic, M.2
Jorgensen, W.L.3
-
13
-
-
0036933629
-
QSAR with electrotopological state atom index: Human factor Xa inhibitor N2-aroylanthranilamides
-
K. Roy, A.U. De, and C. Sengupta, QSAR with electrotopological state atom index: Human factor Xa inhibitor N2-aroylanthranilamides, J. Drug Des. Discov. 18 (2002), pp. 33-43.
-
(2002)
J. Drug Des. Discov.
, vol.18
, pp. 33-43
-
-
Roy, K.1
De, A.U.2
Sengupta, C.3
-
14
-
-
0036933836
-
QSAR of human factor Xa inhibitor N2-aroylanthranilamides using principal component factor analysis
-
K. Roy, A.U. De, and C. Sengupta, QSAR of human factor Xa inhibitor N2-aroylanthranilamides using principal component factor analysis, J. Drug Des. Discov. 18 (2002), pp. 23-31.
-
(2002)
J. Drug Des. Discov.
, vol.18
, pp. 23-31
-
-
Roy, K.1
De, A.U.2
Sengupta, C.3
-
15
-
-
0032015246
-
Evaluation of proposed modes of binding of (2S)-2-[4-[[(3S)-1- acetimidoyl-3-pyrrolidinyl] oxy]phenyl]-3-(7-am idino-2-naphthyl)propanoic acid hydrochloride and some analogs to factor Xa using a comparative molecular field analysis
-
R.J. Vaz, L.R. McLean, and J.T. Pelton, Evaluation of proposed modes of binding of (2S)-2-[4-[[(3S)-1-acetimidoyl-3-pyrrolidinyl] oxy]phenyl]-3-(7-am idino-2-naphthyl)propanoic acid hydrochloride and some analogs to factor Xa using a comparative molecular field analysis, J. Comput. Aided Mol. Des. 12 (1998), pp. 99-110.
-
(1998)
J. Comput. Aided Mol. Des.
, vol.12
, pp. 99-110
-
-
Vaz, R.J.1
McLean, L.R.2
Pelton, J.T.3
-
16
-
-
10744219996
-
Design synthesis, and SAR of anthranilamide-based factor Xa inhibitors with improved functional activity
-
P. Zhang, L. Bao, J.F. Zuckett, Z.J. Jia, J. Woolfrey, A. Arfsten, S. Edwards, U. Sinha, A. Hutchaleelaha, and J.L. Lambing, Design, synthesis, and SAR of anthranilamide-based factor Xa inhibitors with improved functional activity, Bioorg. Med. Chem. Lett. 14 (2004), pp. 989-993.
-
(2004)
Bioorg. Med. Chem. Lett.
, vol.14
, pp. 989-993
-
-
Zhang, P.1
Bao, L.2
Zuckett, J.F.3
Jia, Z.J.4
Woolfrey, J.5
Arfsten, A.6
Edwards, S.7
Sinha, U.8
Hutchaleelaha, A.9
Lambing, J.L.10
-
17
-
-
28844509315
-
QSAR studies of N1-(5-chloro-2-pyridyl)-2-{[4-(alkyl methyl) benzoyl] amino}-5-chlorobenzamide analogs
-
N. Rameshwar, K. Krishna, B. Ashok Kumar, and T. Parthasarathy, QSAR studies of N1-(5-chloro-2-pyridyl)-2-{[4-(alkyl methyl) benzoyl] amino}-5-chlorobenzamide analogs, Bioorg. Med. Chem. 14 (2006), pp. 319-325.
-
(2006)
Bioorg. Med. Chem.
, vol.14
, pp. 319-325
-
-
Rameshwar, N.1
Krishna, K.2
Ashok Kumar, B.3
Parthasarathy, T.4
-
18
-
-
84988115618
-
Validation of the general purpose tripos 5.2 force field
-
M. Clark, R.D. Cramer, III, and N. Van Opdenbosch, Validation of the general purpose tripos 5.2 force field, J. Comput. Chem. 10 (1989), pp. 982-1012.
-
(1989)
J. Comput. Chem.
, vol.10
, pp. 982-1012
-
-
Clark, M.1
Cramer, R.D.2
Van Opdenbosch, N.3
-
19
-
-
0023751431
-
Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins
-
R.D. Cramer, III, D.E. Patterson, and J.D. Bunce, Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins, J. Am. Chem. Soc. 110 (1988), pp. 5959-5967.
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 5959-5967
-
-
Cramer, R.D.1
Patterson, D.E.2
Bunce, J.D.3
-
20
-
-
0000120265
-
All-orientation search and allplacement search in comparative molecular field analysis
-
R. Wang, Y. Gao, L. Liu, and L. Lai, All-orientation search and allplacement search in comparative molecular field analysis, J. Mol. Model. 4 (1998), pp. 276-283.
-
(1998)
J. Mol. Model.
, vol.4
, pp. 276-283
-
-
Wang, R.1
Gao, Y.2
Liu, L.3
Lai, L.4
-
21
-
-
0002194587
-
Multivariate data analysis in chemistry
-
D. Reidel Publishing Company, Dordrecht, Holland, (ISBN 90-277-1846-6).
-
S. Wold, C. Albano, W.J. Dunn, U. Edlund, K. Esbensen, P. Geladi, S. Hellberg, E. Johansson, W. Lindberg, and M. Sjostrom, Multivariate data analysis in chemistry, Chemometrics: Mathematics and Statistics in Chemistry, D. Reidel Publishing Company, Dordrecht, Holland, 138 (1984), pp. 17 (ISBN 90-277-1846-6).
-
(1984)
Chemometrics: Mathematics and Statistics in Chemistry
, vol.138
, pp. 17
-
-
Wold, S.1
Albano, C.2
Dunn, W.J.3
Edlund, U.4
Esbensen, K.5
Geladi, P.6
Hellberg, S.7
Johansson, E.8
Lindberg, W.9
Sjostrom, M.10
-
22
-
-
0029655006
-
Cross-validated R2-guided region selection for comparative molecular field analysis: A simple method to achieve consistent results
-
S.J. Cho and A. Tropsha, Cross-validated R2-guided region selection for comparative molecular field analysis: A simple method to achieve consistent results, J. Med. Chem. 38 (1995), pp. 1060-1066.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 1060-1066
-
-
Cho, S.J.1
Tropsha, A.2
-
23
-
-
77957834344
-
3D-QSAR analysis of human immunodeficiency virus entry-1 inhibitors by CoMFA and CoMSIA
-
S. Pirhadi and J.B. Ghasemi, 3D-QSAR analysis of human immunodeficiency virus entry-1 inhibitors by CoMFA and CoMSIA, Eur. J. Med. Chem. 45 (2010), pp. 4897-4903.
-
(2010)
Eur. J. Med. Chem.
, vol.45
, pp. 4897-4903
-
-
Pirhadi, S.1
Ghasemi, J.B.2
-
24
-
-
79951892624
-
3D-QSAR studies of 2-arylbenzoxazoles as novel cholesteryl ester transfer protein inhibitors
-
J.B. Ghasemi, S. Pirhadi, and M. Ayati, 3D-QSAR studies of 2-arylbenzoxazoles as novel cholesteryl ester transfer protein inhibitors, Bull. Korean Chem. Soc. 32 (2011), pp. 645-650.
-
(2011)
Bull. Korean Chem. Soc.
, vol.32
, pp. 645-650
-
-
Ghasemi, J.B.1
Pirhadi, S.2
Ayati, M.3
-
25
-
-
84876293169
-
-
QSARTM Manual, SYBYL 7.3, Tripos, St Louis, MO, USA
-
QSARTM Manual, SYBYL 7.3, Tripos, St Louis, MO, USA, 2006.
-
(2006)
-
-
-
26
-
-
0027310371
-
Generating optimal linear PLS estimations (GOLPE): An advanced chemometric tool for handling 3D-QSAR problems
-
M. Baroni, G. Costantino, G. Cruciani, D. Riganelli, R. Valigi, and S. Clementi, Generating optimal linear PLS estimations (GOLPE): An advanced chemometric tool for handling 3D-QSAR problems, Quant. Struct. Act. Relationships 12 (1993), pp. 9-20.
-
(1993)
Quant. Struct. Act. Relationships
, vol.12
, pp. 9-20
-
-
Baroni, M.1
Costantino, G.2
Cruciani, G.3
Riganelli, D.4
Valigi, R.5
Clementi, S.6
-
28
-
-
84857514268
-
Comparative studies on some metrics for external validation of QSPR models
-
K. Roy, I. Mitra, S. Kar, P.K. Ojha, R.N. Das, and H. Kabir, Comparative studies on some metrics for external validation of QSPR models, J. Chem. Info. Model. 52 (2012), pp. 396-408.
-
(2012)
J. Chem. Info. Model.
, vol.52
, pp. 396-408
-
-
Roy, K.1
Mitra, I.2
Kar, S.3
Ojha, P.K.4
Das, R.N.5
Kabir, H.6
-
29
-
-
79955650139
-
Further exploring r2 m metrics for validation of QSPR models
-
P.K. Ojha, I. Mitra, R.N. Das, and K. Roy, Further exploring r2 m metrics for validation of QSPR models, Chemom. Intell. Lab. Syst. 107 (2011), pp. 194-205.
-
(2011)
Chemom. Intell. Lab. Syst.
, vol.107
, pp. 194-205
-
-
Ojha, P.K.1
Mitra, I.2
Das, R.N.3
Roy, K.4
-
30
-
-
67249129284
-
On two novel parameters for validation of predictive QSAR models
-
P.P. Roy, S. Paul, I. Mitra, and K. Roy, On two novel parameters for validation of predictive QSAR models, Molecules 14 (2009), pp. 1660-1701.
-
(2009)
Molecules
, vol.14
, pp. 1660-1701
-
-
Roy, P.P.1
Paul, S.2
Mitra, I.3
Roy, K.4
-
31
-
-
0034710718
-
GRid-INdependent descriptors (GRIND): A novel class of alignmentindependent three-dimensional molecular descriptors
-
M. Pastor, G. Cruciani, I. McLay, S. Pickett, and S. Clementi, GRid-INdependent descriptors (GRIND): A novel class of alignmentindependent three-dimensional molecular descriptors, J. Med. Chem. 43 (2000), pp. 3233-3243.
-
(2000)
J. Med. Chem.
, vol.43
, pp. 3233-3243
-
-
Pastor, M.1
Cruciani, G.2
McLay, I.3
Pickett, S.4
Clementi, S.5
-
32
-
-
1642278252
-
Structure-based rationalization of antitumor drugs mechanism of action by a MIF approach
-
G. Cruciani, P. Benedetti, G. Caltabiano, D.F. Condorelli, C.G. Fortuna, and G. Musumarra, Structure-based rationalization of antitumor drugs mechanism of action by a MIF approach, Eur. J. Med. Chem. 39 (2004), pp. 281-289.
-
(2004)
Eur. J. Med. Chem.
, vol.39
, pp. 281-289
-
-
Cruciani, G.1
Benedetti, P.2
Caltabiano, G.3
Condorelli, D.F.4
Fortuna, C.G.5
Musumarra, G.6
-
33
-
-
16644397215
-
GRIND-derived pharmacophore model for a series of atropanyl derivative ligands of the sigma-2 receptor
-
P. Cratteri, M.N. Romanelli, G. Cruciani, C. Bonaccini, and F. Melani, GRIND-derived pharmacophore model for a series of atropanyl derivative ligands of the sigma-2 receptor, J. Comput. Aided Mol. Des. 18 (2004), pp. 361-374.
-
(2004)
J. Comput. Aided Mol. Des.
, vol.18
, pp. 361-374
-
-
Cratteri, P.1
Romanelli, M.N.2
Cruciani, G.3
Bonaccini, C.4
Melani, F.5
-
34
-
-
2942604990
-
GRIND/ALMOND investigations on CysLT1 receptor antagonists of the quinolinyl (bridged) aryl type
-
P. Benedetti, R. Mannhold, G. Cruciani, and G. Ottaviani, GRIND/ALMOND investigations on CysLT1 receptor antagonists of the quinolinyl (bridged) aryl type, Bioorg. Med. Chem. 12 (2004), pp. 3607-3617.
-
(2004)
Bioorg. Med. Chem.
, vol.12
, pp. 3607-3617
-
-
Benedetti, P.1
Mannhold, R.2
Cruciani, G.3
Ottaviani, G.4
-
35
-
-
17444419056
-
A pharmacophore hypothesis for P-glycoprotein substrate recognition using GRINDbased 3D-QSAR
-
G. Cianchetta, R.W. Singleton, M. Zhang, M. Wildgoose, D. Giesing, A. Fravolini, G. Cruciani, and R.J. Vaz, A pharmacophore hypothesis for P-glycoprotein substrate recognition using GRINDbased 3D-QSAR, J. Med. Chem. 48 (2005), pp. 2927-2935.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 2927-2935
-
-
Cianchetta, G.1
Singleton, R.W.2
Zhang, M.3
Wildgoose, M.4
Giesing, D.5
Fravolini, A.6
Cruciani, G.7
Vaz, R.J.8
-
36
-
-
0347088831
-
Use of alignment-free molecular descriptors in diversity analysis and optimal sampling of molecular libraries
-
F. Fontaine, M. Pastor, H. Gutierrez-de-Teran, J.J. Lozano, and F. Sanz, Use of alignment-free molecular descriptors in diversity analysis and optimal sampling of molecular libraries, Mol. Divers. 6 (2003), pp. 135-147.
-
(2003)
Mol. Divers.
, vol.6
, pp. 135-147
-
-
Fontaine, F.1
Pastor, M.2
Gutierrez-De-Teran, H.3
Lozano, J.J.4
Sanz, F.5
-
37
-
-
1542316348
-
Novel approaches for modeling of the A1 adenosine receptor and its agonist binding site
-
H. Gutierrez-de-Teran, N.B. Centeno, M. Pastor, and F. Sanz, Novel approaches for modeling of the A1 adenosine receptor and its agonist binding site, Proteins Struct. Funct. Bioinform. 54 (2004), pp. 705-715.
-
(2004)
Proteins Struct. Funct. Bioinform.
, vol.54
, pp. 705-715
-
-
Gutierrez-De-Teran, H.1
Centeno, N.B.2
Pastor, M.3
Sanz, F.4
-
38
-
-
45849133803
-
GRIND-based 3D-QSAR to predict inhibitory activity for similar enzymes
-
G. Ermondi and G. Caron, GRIND-based 3D-QSAR to predict inhibitory activity for similar enzymes, OSC and SHC, Eur. J. Med. Chem. 43 (2008), pp. 1462-1468.
-
(2008)
OSC and SHC, Eur. J. Med. Chem.
, vol.43
, pp. 1462-1468
-
-
Ermondi, G.1
Caron, G.2
-
40
-
-
54249093364
-
Development and validation of AMANDA a new algorithm for selecting highly relevant regions in molecular interaction fields
-
A. Duran, G.C. Martýnez, and M. Pastor, Development and validation of AMANDA, a new algorithm for selecting highly relevant regions in molecular interaction fields, J. Chem. Info. Model. 48 (2008), pp. 1813-1823.
-
(2008)
J. Chem. Info. Model.
, vol.48
, pp. 1813-1823
-
-
Duran, A.1
Martýnez, G.C.2
Pastor, M.3
-
42
-
-
0035965476
-
PLS-regression: A basic tool of chemometrics
-
S. Wold, M. Sjostrom, and L. Eriksson, PLS-regression: A basic tool of chemometrics, Chemometrics Intell. Lab. Syst. 58 (2001), pp. 109-130.
-
(2001)
Chemometrics Intell. Lab. Syst.
, vol.58
, pp. 109-130
-
-
Wold, S.1
Sjostrom, M.2
Eriksson, L.3
-
43
-
-
18244365115
-
Calculating virtual log P in the alkane/water system (log P Nalk) and its derived parameters Dlog P Noct-alk and log DpHalk
-
G. Caron and G. Ermondi, Calculating virtual log P in the alkane/water system (log P Nalk) and its derived parameters Dlog P Noct-alk and log DpHalk, J. Med. Chem. 48 (2005), pp. 3269-3279.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 3269-3279
-
-
Caron, G.1
Ermondi, G.2
-
44
-
-
0029923976
-
X-ray structure of active site-inhibited clotting factor Xa implications for drug design and substrate recognition
-
H. Brandstetter, A. Kuhne, W. Bode, R. Huber, W. von der Saal, K. Wirthensohn, and R.A. Engh, X-ray structure of active site-inhibited clotting factor Xa implications for drug design and substrate recognition, J. Biol. Chem. 271 (1996), pp. 29988-29992.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 29988-29992
-
-
Brandstetter, H.1
Kuhne, A.2
Bode, W.3
Huber, R.4
Saal Der W.Von5
Wirthensohn, K.6
Engh, R.A.7
-
45
-
-
84986505827
-
Validation of the general purpose QUANTA 3.2/CHARMm force field
-
F.A. Momany and R. Rone, Validation of the general purpose QUANTA 3.2/CHARMm force field, J. Comput. Chem. 13 (1992), pp. 888-900.
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 888-900
-
-
Momany, F.A.1
Rone, R.2
-
46
-
-
84876282246
-
-
Accelrys Software Inc. Discovery Studio 2.5. Accelrys Software Inc
-
Accelrys Software Inc. Discovery Studio 2.5. Accelrys Software Inc., 2009. http://www.accelrys.com
-
(2009)
-
-
-
47
-
-
0041781898
-
Detailed analysis of grid-based molecular docking: A case study of CDOCKER-A CHARMm-based MD docking algorithm
-
G. Wu, D.H. Robertson, C.L. Brooks, III, and M. Vieth, Detailed analysis of grid-based molecular docking: A case study of CDOCKER-a CHARMm-based MD docking algorithm, J. Comput. Chem. 24 (2003), pp. 1549-1562.
-
(2003)
J. Comput. Chem.
, vol.24
, pp. 1549-1562
-
-
Wu, G.1
Robertson, D.H.2
Brooks, C.L.3
Vieth, M.4
-
48
-
-
84856692771
-
Docking alignment-3D-QSAR of a new class of potent and non-chiral indole-3-carboxamide-based renin inhibitors
-
J.B. Ghasemi and S. Pirhadi, Docking alignment-3D-QSAR of a new class of potent and non-chiral indole-3-carboxamide-based renin inhibitors, Collect. Czech. Chem. Commun. 76 (2011), pp. 1447-1469.
-
(2011)
Collect. Czech. Chem. Commun.
, vol.76
, pp. 1447-1469
-
-
Ghasemi, J.B.1
Pirhadi, S.2
-
49
-
-
27344454932
-
GROMACS: Fast flexible, and free
-
D. Van Der Spoel, E. Lindahl, B. Hess, G. Groenhof, A.E. Mark, and H.J.C. Berendsen, GROMACS: Fast, flexible, and free, J. Comput. Chem. 26 (2005), pp. 1701-1718.
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1701-1718
-
-
Spoel Der D.Van1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
Berendsen, H.J.C.6
-
50
-
-
0035789518
-
GROMACS 3.0: A package for molecular simulation and trajectory analysis
-
E. Lindahl, B. Hess, and D. Van Der Spoel, GROMACS 3.0: A package for molecular simulation and trajectory analysis, J. Mol. Model. 7 (2001), pp. 306-317.
-
(2001)
J. Mol. Model.
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
Spoel Der D.Van3
-
51
-
-
0030158429
-
PRODRG a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules
-
D.M.F. Aalten, R. Bywater, J. Findlay, M. Hendlich, R. Hooft, and G. Vriend, PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules, J. Comput. Aided Mol. Des. 10 (1996), pp. 255-262.
-
(1996)
J. Comput. Aided Mol. Des.
, vol.10
, pp. 255-262
-
-
Aalten, D.M.F.1
Bywater, R.2
Findlay, J.3
Hendlich, M.4
Hooft, R.5
Vriend, G.6
-
52
-
-
34848914794
-
Tn5 transposase as a useful platform to simulate HIV-1 integrase inhibitor binding mode
-
M.L. Barreca, F. Ortuso, N. Iraci, L. De Luca, S. Alcaro, and A. Chimirri, Tn5 transposase as a useful platform to simulate HIV-1 integrase inhibitor binding mode, Biochem. Biophys. Res. Commun. 363 (2007), pp. 554-560.
-
(2007)
Biochem. Biophys. Res. Commun.
, vol.363
, pp. 554-560
-
-
Barreca, M.L.1
Ortuso, F.2
Iraci, N.3
De Luca, L.4
Alcaro, S.5
Chimirri, A.6
-
53
-
-
70349993587
-
Effective removal of rhodamine B from contaminated water using non-covalent imprinted microspheres designed by computational approach
-
R. Liu, X. Li, Y. Li, P. Jin, W. Qin, and J. Qi, Effective removal of rhodamine B from contaminated water using non-covalent imprinted microspheres designed by computational approach, Biosens. Bioelectron. 25 (2009), pp. 629-634.
-
(2009)
Biosens. Bioelectron.
, vol.25
, pp. 629-634
-
-
Liu, R.1
Li, X.2
Li, Y.3
Jin, P.4
Qin, W.5
Qi, J.6
-
54
-
-
30544440025
-
Dynamic mechanism of E2020 binding to acetylcholinesterase: A steered molecular dynamics simulation
-
C. Niu, Y. Xu, X. Luo, W. Duan, I. Silman, J.L. Sussman, W. Zhu, K. Chen, and J. Shen, Dynamic mechanism of E2020 binding to acetylcholinesterase: A steered molecular dynamics simulation, J. Phys. Chem. B 109 (2005), pp. 23730-23738.
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 23730-23738
-
-
Niu, C.1
Xu, Y.2
Luo, X.3
Duan, W.4
Silman, I.5
Sussman, J.L.6
Zhu, W.7
Chen, K.8
Shen, J.9
-
55
-
-
0002775934
-
Interaction models for water in relation to protein hydration
-
B. Pullman (Eds)., The Netherlands
-
H. Berendsen, J. Postma, W. Van Gunsteren, and J. Hermans, Interaction models for water in relation to protein hydration, B. Pullman (Eds). Intermolecular forces. Reidel, Dordrecht, The Netherlands (1981), pp. 331-342.
-
(1981)
Intermolecular Forces. Reidel, Dordrecht
, pp. 331-342
-
-
Berendsen, H.1
Postma, J.2
Van Gunsteren, W.3
Hermans, J.4
-
56
-
-
0019707626
-
Polymorphic transitions in single crystals: A new molecular dynamics method
-
M. Parrinello and A. Rahman, Polymorphic transitions in single crystals: A new molecular dynamics method, J. Appl. Phys. 52 (1981), pp. 7182-7190.
-
(1981)
J. Appl. Phys.
, vol.52
, pp. 7182-7190
-
-
Parrinello, M.1
Rahman, A.2
-
57
-
-
0037157153
-
Computational drug design accommodating receptor flexibility: The relaxed complex scheme
-
J.H. Lin, A.L. Perryman, J.R. Schames, and J.A. McCammon, Computational drug design accommodating receptor flexibility: The relaxed complex scheme, J. Am. Chem. Soc. 124 (2002), pp. 5632-5633.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 5632-5633
-
-
Lin, J.H.1
Perryman, A.L.2
Schames, J.R.3
McCammon, J.A.4
-
58
-
-
20844450385
-
Statistical variation in progressive scrambling
-
R. Clark and P. Fox, Statistical variation in progressive scrambling, J. Comput. Aided Mol. Des. 18 (2004), pp. 563-576.
-
(2004)
J. Comput. Aided Mol. Des.
, vol.18
, pp. 563-576
-
-
Clark, R.1
Fox, P.2
-
59
-
-
33845277149
-
QSAR prediction of estrogen activity for a large set of diverse chemicals under the guidance of OECD principles
-
H. Liu, E. Papa, and P. Gramatica, QSAR prediction of estrogen activity for a large set of diverse chemicals under the guidance of OECD principles, J. Chem. Res. Toxicol. 19 (2006), pp. 1540-1548.
-
(2006)
J. Chem. Res. Toxicol.
, vol.19
, pp. 1540-1548
-
-
Liu, H.1
Papa, E.2
Gramatica, P.3
-
60
-
-
77949345210
-
Per-and polyfluoro toxicity (LC50 inhalation) study in rat and mouse using QSAR modeling
-
B. Bhhatarai and P. Gramatica, Per-and polyfluoro toxicity (LC50 inhalation) study in rat and mouse using QSAR modeling, J. Chem. Res. Toxicol. 23 (2010), pp. 528-539.
-
(2010)
J. Chem. Res. Toxicol.
, vol.23
, pp. 528-539
-
-
Bhhatarai, B.1
Gramatica, P.2
|