-
1
-
-
0032509984
-
Random or rational design? Evaluation of diverse compound subsets from chemical structure databases
-
Potter, T. and Matter, H., Random or rational design? Evaluation of diverse compound subsets from chemical structure databases, J. Med. Chem., 41 (1998) 478-488.
-
(1998)
J. Med. Chem.
, vol.41
, pp. 478-488
-
-
Potter, T.1
Matter, H.2
-
2
-
-
0032587975
-
Rational combinatorial library design. 3. Simulated annealing guided evaluation (SAGE) of molecular diversity: A novel computational tool for universal library design and database mining
-
Zheng, W., Cho, S. J., Waller, C. L. and Tropsha, A., Rational combinatorial library design. 3. Simulated annealing guided evaluation (SAGE) of molecular diversity: A novel computational tool for universal library design and database mining, J. Chem. Inf. Comput. Sci., 39 (1999) 738-746.
-
(1999)
J. Chem. Inf. Comput. Sci.
, vol.39
, pp. 738-746
-
-
Zheng, W.1
Cho, S.J.2
Waller, C.L.3
Tropsha, A.4
-
3
-
-
0031152087
-
Computational approaches for combinatorial library, design and molecular diversity analysis
-
Blaney, J. M. and Martin, E. J., Computational approaches for combinatorial library, design and molecular diversity analysis, Curr. Opin. Chem. Biol., 1 (1997) 54-59.
-
(1997)
Curr. Opin. Chem. Biol.
, vol.1
, pp. 54-59
-
-
Blaney, J.M.1
Martin, E.J.2
-
4
-
-
0032087816
-
Computational methods in molecular diversity and combinatorial chemistry
-
Bures, M. G. and Martin, Y. C., Computational methods in molecular diversity and combinatorial chemistry, Curr. Opin. Chem. Biol., 2 (1998) 376-380.
-
(1998)
Curr. Opin. Chem. Biol.
, vol.2
, pp. 376-380
-
-
Bures, M.G.1
Martin, Y.C.2
-
5
-
-
0034074354
-
Functional diversity of compound libraries
-
Gorse, D. and Lahana, R., Functional diversity of compound libraries, Curr. Opin. Chem. Biol., 4 (2000) 287-294.
-
(2000)
Curr. Opin. Chem. Biol.
, vol.4
, pp. 287-294
-
-
Gorse, D.1
Lahana, R.2
-
6
-
-
0033968062
-
Chemoinformatics - Similarity and diversity in chemical libraries
-
Willett, P., Chemoinformatics - Similarity and diversity in chemical libraries, Curr. Opin. Biotechnol., 11 (2000) 85-88.
-
(2000)
Curr. Opin. Biotechnol.
, vol.11
, pp. 85-88
-
-
Willett, P.1
-
7
-
-
0036244307
-
Rational principles of compound selection for combinatorial library design
-
Tropsha, A. and Zheng, W., Rational principles of compound selection for combinatorial library design, Comb. Chem. High Throughput Screen., 5 (2002) 111-123.
-
(2002)
Comb. Chem. High Throughput Screen.
, vol.5
, pp. 111-123
-
-
Tropsha, A.1
Zheng, W.2
-
8
-
-
0036010704
-
Structure-based combinatorial library design: Methodologies and applications
-
Beavers, M. P. and Chen, X., Structure-based combinatorial library design: Methodologies and applications, J. Mol. Graph. Model., 20 (2002) 463-468.
-
(2002)
J. Mol. Graph. Model.
, vol.20
, pp. 463-468
-
-
Beavers, M.P.1
Chen, X.2
-
9
-
-
0035349270
-
Diverse viewpoints on computational aspects of molecular diversity
-
Martin, Y. C., Diverse viewpoints on computational aspects of molecular diversity, J. Comb. Chem., 3 (2001) 231-250.
-
(2001)
J. Comb. Chem.
, vol.3
, pp. 231-250
-
-
Martin, Y.C.1
-
10
-
-
0036213553
-
Molecular diversity, sample generation on the basis of quantum-mechanical computations and principal component analysis
-
Gutiérrez-de-Terán, H., Lozano, J. J., Segarra, V. and Sanz, F., Molecular diversity, sample generation on the basis of quantum-mechanical computations and principal component analysis, Comb. Chem. High Throughput Screen., 5 (2002) 49-57.
-
(2002)
Comb. Chem. High Throughput Screen.
, vol.5
, pp. 49-57
-
-
Gutiérrez-de-Terán, H.1
Lozano, J.J.2
Segarra, V.3
Sanz, F.4
-
11
-
-
0001795138
-
Background theory, of molecular diversity
-
Dean, P. M. and Lewis, R. A. (eds.), Kluwer Academic Publishers, Dordrecht
-
Gillet, V. J., Background theory, of molecular diversity, In Dean, P. M. and Lewis, R. A. (eds.), Molecular Diversity in Drug Design, Kluwer Academic Publishers, Dordrecht, 1999, pp. 43-65.
-
(1999)
Molecular Diversity in Drug Design
, pp. 43-65
-
-
Gillet, V.J.1
-
12
-
-
0033779243
-
Molecular descriptors in chemoinformatics, computational combinatorial chemistry, and virtual screening
-
Xue, L. and Bajorath, J., Molecular descriptors in chemoinformatics, computational combinatorial chemistry, and virtual screening, Comb. Chem. High Throughput Screen., 3 (2000) 363-372.
-
(2000)
Comb. Chem. High Throughput Screen.
, vol.3
, pp. 363-372
-
-
Xue, L.1
Bajorath, J.2
-
13
-
-
0034351497
-
Library design using BCUT chemistry-space descriptory and multiple four-point pharmacophore fingerprints: Simultaneous optimization and structure-based diversity
-
Mason, J. S. and Beno, B. R., Library, design using BCUT chemistry-space descriptory and multiple four-point pharmacophore fingerprints: Simultaneous optimization and structure-based diversity, J. Mol. Graph. Model., 18 (2000) 438-451, 538.
-
(2000)
J. Mol. Graph. Model.
, vol.18
, pp. 438-451
-
-
Mason, J.S.1
Beno, B.R.2
-
14
-
-
0032201120
-
Bioactive diversity and screening library selection via affinity fingerprinting
-
Dixon, S. L. and Villar, H. O., Bioactive diversity and screening library selection via affinity fingerprinting, J. Chem. Inf. Comput. Sci., 38 (1998) 1192-1203.
-
(1998)
J. Chem. Inf. Comput. Sci.
, vol.38
, pp. 1192-1203
-
-
Dixon, S.L.1
Villar, H.O.2
-
15
-
-
0035272185
-
Exploring chemical rings in a simple topological-descriptor space
-
Lipkus, A. H., Exploring chemical rings in a simple topological-descriptor space, J. Chem. Inf. Comput. Sci., 41 (2001) 430-438.
-
(2001)
J. Chem. Inf. Comput. Sci.
, vol.41
, pp. 430-438
-
-
Lipkus, A.H.1
-
16
-
-
0034351499
-
Use of Markush structure analysis techniques for descriptor generation and clustering of large combinatorial libraries
-
Barnard, J. M., Downs, G. M., Von Scholley-Pfab, A. and Brown, R. D., Use of Markush structure analysis techniques for descriptor generation and clustering of large combinatorial libraries, J. Mol. Graph. Model., 18 (2000) 452-463.
-
(2000)
J. Mol. Graph. Model.
, vol.18
, pp. 452-463
-
-
Barnard, J.M.1
Downs, G.M.2
Von Scholley-Pfab, A.3
Brown, R.D.4
-
17
-
-
0036432336
-
Computing wiener-type indices for virtual combinatorial libraries generated from heteroatom-containing building blocks
-
Ivanciuc, O. and Klein, D. J., Computing wiener-type indices for virtual combinatorial libraries generated from heteroatom-containing building blocks, J. Chem. Inf. Comput. Sci., 42 (2002) 8-22.
-
(2002)
J. Chem. Inf. Comput. Sci.
, vol.42
, pp. 8-22
-
-
Ivanciuc, O.1
Klein, D.J.2
-
18
-
-
0034923575
-
Similarity searching in large combinatorial chemistry spaces
-
Rarey, M. and Stahl, M., Similarity searching in large combinatorial chemistry spaces, J. Comput. Aided Mol. Des., 15 (2001) 497-520.
-
(2001)
J. Comput. Aided Mol. Des.
, vol.15
, pp. 497-520
-
-
Rarey, M.1
Stahl, M.2
-
19
-
-
0036589086
-
Structure/response correlations and similarity/diversity analysis by GETAWAY descriptors. I. Theory of the novel 3-D molecular descriptors
-
Consonni, V., Todeschini, R. and Pavan, M., Structure/response correlations and similarity/diversity analysis by GETAWAY descriptors. I. Theory of the novel 3-D molecular descriptors, J. Chem. Inf. Comput. Sci., 42 (2002) 682-692.
-
(2002)
J. Chem. Inf. Comput. Sci.
, vol.42
, pp. 682-692
-
-
Consonni, V.1
Todeschini, R.2
Pavan, M.3
-
20
-
-
0035950118
-
Measuring molecular similarity and diversity: Total pharmacophore diversity
-
Makara, G. M., Measuring molecular similarity and diversity: total pharmacophore diversity, J. Med. Chem., 44 (2001) 3563-3571.
-
(2001)
J. Med. Chem.
, vol.44
, pp. 3563-3571
-
-
Makara, G.M.1
-
21
-
-
0021871375
-
A computational procedure for determining energetically favorable binding sites on biologically important macromolecules
-
Goodford, P. J., A computational procedure for determining energetically favorable binding sites on biologically important macromolecules, J. Med. Chem., 28 (1985) 849-857.
-
(1985)
J. Med. Chem.
, vol.28
, pp. 849-857
-
-
Goodford, P.J.1
-
22
-
-
0023751431
-
Comparative Molecular Field Analysis (CoMFA): I. Effect of shape on binding of steroids to carrier proteins
-
Cramer, R. D., Patterson, D. E. and Bunce, J. D., Comparative Molecular Field Analysis (CoMFA): I. Effect of shape on binding of steroids to carrier proteins, J. Am. Chem. Soc., 110 (1988) 5959-5967.
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 5959-5967
-
-
Cramer, R.D.1
Patterson, D.E.2
Bunce, J.D.3
-
23
-
-
0028101464
-
Comparative molecular field analysis using GRID force-field and GOLPE variable selection methods in a study of inhibitors of glycogen phosphorylase b
-
Cruciani, G. and Watson, K. A., Comparative molecular field analysis using GRID force-field and GOLPE variable selection methods in a study of inhibitors of glycogen phosphorylase b, J. Med. Chem., 37 (1994) 2589-2601.
-
(1994)
J. Med. Chem.
, vol.37
, pp. 2589-2601
-
-
Cruciani, G.1
Watson, K.A.2
-
24
-
-
0033800498
-
VolSurf: A new tool for the pharmacokinetic optimization of lead compounds
-
Cruciani, G., Pastor, M. and Guba, W., VolSurf: A new tool for the pharmacokinetic optimization of lead compounds, Eur. J. Pharm. Sci., 11 Suppl 2 (2000) S29-39.
-
(2000)
Eur. J. Pharm. Sci.
, vol.11
, Issue.SUPPL. 2
-
-
Cruciani, G.1
Pastor, M.2
Guba, W.3
-
25
-
-
0034213636
-
Predicting blood-brain barrier permeation from three-dimensional molecular structure
-
Crivori, P., Cruciani, G., Carrupt, P. A. and Testa, B., Predicting blood-brain barrier permeation from three-dimensional molecular structure, J. Med. Chem., 43 (2000) 2204-2216.
-
(2000)
J. Med. Chem.
, vol.43
, pp. 2204-2216
-
-
Crivori, P.1
Cruciani, G.2
Carrupt, P.A.3
Testa, B.4
-
26
-
-
0037413569
-
Surface descriptors for protein-ligand affinity prediction
-
Zamora, I., Oprea, T., Cruciani, G., Pastor, M. and Ungell, A. L., Surface descriptors for protein-ligand affinity prediction, J. Med. Chem., 46 (2003) 25-33.
-
(2003)
J. Med. Chem.
, vol.46
, pp. 25-33
-
-
Zamora, I.1
Oprea, T.2
Cruciani, G.3
Pastor, M.4
Ungell, A.L.5
-
27
-
-
0034710718
-
GRid-INdependent descriptors (GRIND): A.a novel class of alignment-independent three-dimensional molecular descriptors
-
Pastor, M., Cruciani, G., McLay, I., Pickett, S. and Clementi, S., GRid-INdependent descriptors (GRIND): A.a novel class of alignment-independent three-dimensional molecular descriptors, J. Med. Chem., 43 (2000) 3233-3243.
-
(2000)
J. Med. Chem.
, vol.43
, pp. 3233-3243
-
-
Pastor, M.1
Cruciani, G.2
McLay, I.3
Pickett, S.4
Clementi, S.5
-
28
-
-
0037061635
-
GBR compounds and mepyramines as cocaine abuse therapeutics: Chemometric studies on selectivity using grid independent descriptors (GRIND)
-
Benedetti, P., Mannhold, R., Cruciani, G. and Pastor, M., GBR compounds and mepyramines as cocaine abuse therapeutics: Chemometric studies on selectivity using grid independent descriptors (GRIND), J. Med. Chem., 45 (2002) 1577-1584.
-
(2002)
J. Med. Chem.
, vol.45
, pp. 1577-1584
-
-
Benedetti, P.1
Mannhold, R.2
Cruciani, G.3
Pastor, M.4
-
29
-
-
12244310480
-
Discriminant and quantitative PLS analysis of competitive CYP2C9 inhibitors versus non-inhibitory using alignment independent GRIND descriptors
-
Afzelius, L., Masimirembwa, C. M., Karlen, A., Andersson, T. B. and Zamora, I., Discriminant and quantitative PLS analysis of competitive CYP2C9 inhibitors versus non-inhibitory using alignment independent GRIND descriptors, J. Comput. Aided Mol. Des., 16 (2002) 443-458.
-
(2002)
J. Comput. Aided Mol. Des.
, vol.16
, pp. 443-458
-
-
Afzelius, L.1
Masimirembwa, C.M.2
Karlen, A.3
Andersson, T.B.4
Zamora, I.5
-
30
-
-
0037142339
-
Suitability of molecular descriptors for database mining. A comparative analysis
-
Cruciani, G., Pastor, M. and Mannhold, R., Suitability of molecular descriptors for database mining. A comparative analysis, J. Med. Chem., 45 (2002) 2685-2694.
-
(2002)
J. Med. Chem.
, vol.45
, pp. 2685-2694
-
-
Cruciani, G.1
Pastor, M.2
Mannhold, R.3
-
31
-
-
0012286670
-
Pharmacokinetically based mapping device for chemical space navigation
-
Oprea, T. I., Zamora, I. and Ungell, A. L., Pharmacokinetically based mapping device for chemical space navigation, J. Comb. Chem., 4 (2002) 258-266.
-
(2002)
J. Comb. Chem.
, vol.4
, pp. 258-266
-
-
Oprea, T.I.1
Zamora, I.2
Ungell, A.L.3
-
32
-
-
31444452744
-
Automatic generation of 3-D atomic coordinates for organic molecules
-
Gasteiger, J., Rudolph, C. and Sadowski, J., Automatic generation of 3-D atomic coordinates for organic molecules, Tetrahedron Comp. Method., 3 (1990) 537-547.
-
(1990)
Tetrahedron Comp. Method.
, vol.3
, pp. 537-547
-
-
Gasteiger, J.1
Rudolph, C.2
Sadowski, J.3
-
33
-
-
0001267117
-
Organic Solvation Model
-
Giesen, D. J., Gu, M. Z., Cramer, C. J. and Truhlar, D. G., A Universal Organic Solvation Model, J. Org. Chem., 61 (1996) 8720-8721.
-
(1996)
J. Org. Chem.
, vol.61
, pp. 8720-8721
-
-
Giesen, D.J.1
Gu, M.Z.2
Cramer, C.J.3
Truhlar, D.G.4
Universal, A.5
-
34
-
-
0003926248
-
-
University of Minnesota, Minneapolis
-
AMSOL 6.5.2, Hawkins, G. D., Giesen, D. J., G. C., L., Chambers, C. C., Rossi, I., Storer, J. W., Rinaldi, D., Liotard, D. A., Cramer, C. J. and Truhlar, D. G., University of Minnesota, Minneapolis, 1997.
-
(1997)
AMSOL 6.5.2
-
-
Hawkins, G.D.1
Giesen, D.J.2
Chambers, C.C.3
Rossi, I.4
Storer, J.W.5
Rinaldi, D.6
Liotard, D.A.7
Cramer, C.J.8
Truhlar, D.G.9
-
35
-
-
0346527683
-
-
Molecular Discovery Ltd., Perugia
-
VolSurf 3.0.7c, Cruciani, G., Pastor, M. and Mecucci, S., Molecular Discovery Ltd., Perugia, 2002.
-
(2002)
VolSurf 3.0.7c
-
-
Cruciani, G.1
Pastor, M.2
Mecucci, S.3
-
36
-
-
0345896959
-
-
Molecular Discovery Ltd., Perugia
-
Almond 3.2.0, Cruciani, G., Fontaine, F. and Pastor, M., Molecular Discovery Ltd., Perugia, 2003.
-
(2003)
Almond 3.2.0
-
-
Cruciani, G.1
Fontaine, F.2
Pastor, M.3
-
37
-
-
0016553858
-
Principal component analysis: An alternative to 'referee' methods in method comparison studies
-
Carey, R. N., Wold, S. and Westgard, J. O., Principal component analysis: an alternative to 'referee' methods in method comparison studies, Anal. Chem., 47 (1975) 1824-1829.
-
(1975)
Anal. Chem.
, vol.47
, pp. 1824-1829
-
-
Carey, R.N.1
Wold, S.2
Westgard, J.O.3
-
38
-
-
0347788145
-
-
SPSS 11.0.1, SPSS inc. Chicago, 2001
-
SPSS 11.0.1, SPSS inc. Chicago, 2001.
-
-
-
-
39
-
-
33645265985
-
Clustering methods and their uses in computational chemistry
-
Lipkowitz, K. B. and Boyd, D. B. (eds.), Wiley-VCH, John Wiley & Sons, Inc.
-
Downs, G. M. and Barnard, J. M., Clustering methods and their uses in computational chemistry, In Lipkowitz, K. B. and Boyd, D. B. (eds.), Reviews in Computational Chemistry, Wiley-VCH, John Wiley & Sons, Inc., 2002, pp. 1-40.
-
(2002)
Reviews in Computational Chemistry
, pp. 1-40
-
-
Downs, G.M.1
Barnard, J.M.2
|