-
1
-
-
0034723355
-
A model for Escherichia coli DNA polymerase III holoenzyme assembly at primer/template ends. DNA triggers a change in binding specificity of the gamma complex clamp loader
-
B. Ason, J.G. Bertram, M.M. Hingorani, J.M. Beechem, M. O'Donnell, M.F. Goodman, and L.B. Bloom A model for Escherichia coli DNA polymerase III holoenzyme assembly at primer/template ends. DNA triggers a change in binding specificity of the gamma complex clamp loader J. Biol. Chem. 275 2000 3006 3015
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 3006-3015
-
-
Ason, B.1
Bertram, J.G.2
Hingorani, M.M.3
Beechem, J.M.4
O'Donnell, M.5
Goodman, M.F.6
Bloom, L.B.7
-
2
-
-
34547886124
-
The crystal structure of the Thermus aquaticus DnaB helicase monomer
-
S. Bailey, W.K. Eliason, and T.A. Steitz The crystal structure of the Thermus aquaticus DnaB helicase monomer Nucleic Acids Res. 35 2007 4728 4736
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4728-4736
-
-
Bailey, S.1
Eliason, W.K.2
Steitz, T.A.3
-
3
-
-
35348979683
-
Structure of hexameric DnaB helicase and its complex with a domain of DnaG primase
-
S. Bailey, W.K. Eliason, and T.A. Steitz Structure of hexameric DnaB helicase and its complex with a domain of DnaG primase Science 318 2007 459 463
-
(2007)
Science
, vol.318
, pp. 459-463
-
-
Bailey, S.1
Eliason, W.K.2
Steitz, T.A.3
-
4
-
-
0032489041
-
Polymerases and the replisome: Machines within machines
-
T.A. Baker, and S.P. Bell Polymerases and the replisome: machines within machines Cell 92 1998 295 305
-
(1998)
Cell
, vol.92
, pp. 295-305
-
-
Baker, T.A.1
Bell, S.P.2
-
5
-
-
0035868712
-
The DnaB.DnaC complex: A structure based on dimers assembled around an occluded channel
-
M. Bárcena, T. Ruiz, L.E. Donate, S.E. Brown, N.E. Dixon, M. Radermacher, and J.M. Carazo The DnaB.DnaC complex: a structure based on dimers assembled around an occluded channel EMBO J. 20 2001 1462 1468
-
(2001)
EMBO J.
, vol.20
, pp. 1462-1468
-
-
Bárcena, M.1
Ruiz, T.2
Donate, L.E.3
Brown, S.E.4
Dixon, N.E.5
Radermacher, M.6
Carazo, J.M.7
-
6
-
-
44349172245
-
Hexameric ring structure of the N-terminal domain of Mycobacterium tuberculosis DnaB helicase
-
T. Biswas, and O.V. Tsodikov Hexameric ring structure of the N-terminal domain of Mycobacterium tuberculosis DnaB helicase FEBS J. 275 2008 3064 3071
-
(2008)
FEBS J.
, vol.275
, pp. 3064-3071
-
-
Biswas, T.1
Tsodikov, O.V.2
-
7
-
-
0022829375
-
The dnaB protein of Escherichia coli: Mechanism of nucleotide binding, hydrolysis, and modulation by dnaC protein
-
E.E. Biswas, S.B. Biswas, and J.E. Bishop The dnaB protein of Escherichia coli: mechanism of nucleotide binding, hydrolysis, and modulation by dnaC protein Biochemistry 25 1986 7368 7374
-
(1986)
Biochemistry
, vol.25
, pp. 7368-7374
-
-
Biswas, E.E.1
Biswas, S.B.2
Bishop, J.E.3
-
8
-
-
2542535234
-
Quantitative analysis of nucleotide modulation of DNA binding by DnaC protein of Escherichia coli
-
S.B. Biswas, S. Flowers, and E.E. Biswas-Fiss Quantitative analysis of nucleotide modulation of DNA binding by DnaC protein of Escherichia coli Biochem. J. 379 2004 553 562
-
(2004)
Biochem. J.
, vol.379
, pp. 553-562
-
-
Biswas, S.B.1
Flowers, S.2
Biswas-Fiss, E.E.3
-
9
-
-
10944235448
-
ATP hydrolysis by ORC catalyzes reiterative Mcm2-7 assembly at a defined origin of replication
-
J.L. Bowers, J.C. Randell, S. Chen, and S.P. Bell ATP hydrolysis by ORC catalyzes reiterative Mcm2-7 assembly at a defined origin of replication Mol. Cell 16 2004 967 978
-
(2004)
Mol. Cell
, vol.16
, pp. 967-978
-
-
Bowers, J.L.1
Randell, J.C.2
Chen, S.3
Bell, S.P.4
-
10
-
-
3042588011
-
Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex
-
G.D. Bowman, M. O'Donnell, and J. Kuriyan Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex Nature 429 2004 724 730
-
(2004)
Nature
, vol.429
, pp. 724-730
-
-
Bowman, G.D.1
O'Donnell, M.2
Kuriyan, J.3
-
11
-
-
0034714241
-
Identification of a region of Escherichia coli DnaB required for functional interaction with DnaG at the replication fork
-
P. Chang, and K.J. Marians Identification of a region of Escherichia coli DnaB required for functional interaction with DnaG at the replication fork J. Biol. Chem. 275 2000 26187 26195
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 26187-26195
-
-
Chang, P.1
Marians, K.J.2
-
12
-
-
79953769723
-
The structural basis for MCM2-7 helicase activation by GINS and Cdc45
-
A. Costa, I. Ilves, N. Tamberg, T. Petojevic, E. Nogales, M.R. Botchan, and J.M. Berger The structural basis for MCM2-7 helicase activation by GINS and Cdc45 Nat. Struct. Mol. Biol. 18 2011 471 477
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 471-477
-
-
Costa, A.1
Ilves, I.2
Tamberg, N.3
Petojevic, T.4
Nogales, E.5
Botchan, M.R.6
Berger, J.M.7
-
13
-
-
0042200759
-
Replicative helicase loaders: Ring breakers and ring makers
-
M.J. Davey, and M. O'Donnell Replicative helicase loaders: ring breakers and ring makers Curr. Biol. 13 2003 R594 R596
-
(2003)
Curr. Biol.
, vol.13
-
-
Davey, M.J.1
O'Donnell, M.2
-
14
-
-
0037124375
-
The DnaC helicase loader is a dual ATP/ADP switch protein
-
M.J. Davey, L. Fang, P. McInerney, R.E. Georgescu, and M. O'Donnell The DnaC helicase loader is a dual ATP/ADP switch protein EMBO J. 21 2002 3148 3159
-
(2002)
EMBO J.
, vol.21
, pp. 3148-3159
-
-
Davey, M.J.1
Fang, L.2
McInerney, P.3
Georgescu, R.E.4
O'Donnell, M.5
-
15
-
-
80054029342
-
DNA stretching by bacterial initiators promotes replication origin opening
-
K.E. Duderstadt, K. Chuang, and J.M. Berger DNA stretching by bacterial initiators promotes replication origin opening Nature 478 2011 209 213
-
(2011)
Nature
, vol.478
, pp. 209-213
-
-
Duderstadt, K.E.1
Chuang, K.2
Berger, J.M.3
-
16
-
-
73949091058
-
A double-hexameric MCM2-7 complex is loaded onto origin DNA during licensing of eukaryotic DNA replication
-
C. Evrin, P. Clarke, J. Zech, R. Lurz, J. Sun, S. Uhle, H. Li, B. Stillman, and C. Speck A double-hexameric MCM2-7 complex is loaded onto origin DNA during licensing of eukaryotic DNA replication Proc. Natl. Acad. Sci. USA 106 2009 20240 20245
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 20240-20245
-
-
Evrin, C.1
Clarke, P.2
Zech, J.3
Lurz, R.4
Sun, J.5
Uhle, S.6
Li, H.7
Stillman, B.8
Speck, C.9
-
17
-
-
0033213720
-
Replisome assembly at oriC, the replication origin of E. coli, reveals an explanation for initiation sites outside an origin
-
L. Fang, M.J. Davey, and M. O'Donnell Replisome assembly at oriC, the replication origin of E. coli, reveals an explanation for initiation sites outside an origin Mol. Cell 4 1999 541 553
-
(1999)
Mol. Cell
, vol.4
, pp. 541-553
-
-
Fang, L.1
Davey, M.J.2
O'Donnell, M.3
-
18
-
-
0037616144
-
Interactions of the Escherichia coli DnaB helicase hexamer with the replication factor the DnaC protein. Effect of nucleotide cofactors and the ssDNA on protein-protein interactions and the topology of the complex
-
R. Galletto, M.J. Jezewska, and W. Bujalowski Interactions of the Escherichia coli DnaB helicase hexamer with the replication factor the DnaC protein. Effect of nucleotide cofactors and the ssDNA on protein-protein interactions and the topology of the complex J. Mol. Biol. 329 2003 441 465
-
(2003)
J. Mol. Biol.
, vol.329
, pp. 441-465
-
-
Galletto, R.1
Jezewska, M.J.2
Bujalowski, W.3
-
19
-
-
4644261530
-
Unzipping mechanism of the double-stranded DNA unwinding by a hexameric helicase: Quantitative analysis of the rate of the dsDNA unwinding, processivity and kinetic step-size of the Escherichia coli DnaB helicase using rapid quench-flow method
-
R. Galletto, M.J. Jezewska, and W. Bujalowski Unzipping mechanism of the double-stranded DNA unwinding by a hexameric helicase: quantitative analysis of the rate of the dsDNA unwinding, processivity and kinetic step-size of the Escherichia coli DnaB helicase using rapid quench-flow method J. Mol. Biol. 343 2004 83 99
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 83-99
-
-
Galletto, R.1
Jezewska, M.J.2
Bujalowski, W.3
-
20
-
-
4644257077
-
Global conformation of the Escherichia coli replication factor DnaC protein in absence and presence of nucleotide cofactors
-
R. Galletto, R. Maillard, M.J. Jezewska, and W. Bujalowski Global conformation of the Escherichia coli replication factor DnaC protein in absence and presence of nucleotide cofactors Biochemistry 43 2004 10988 11001
-
(2004)
Biochemistry
, vol.43
, pp. 10988-11001
-
-
Galletto, R.1
Maillard, R.2
Jezewska, M.J.3
Bujalowski, W.4
-
21
-
-
15544366916
-
Mapping the interaction of DNA with the Escherichia coli DNA polymerase clamp loader complex
-
E.R. Goedken, S.L. Kazmirski, G.D. Bowman, M. O'Donnell, and J. Kuriyan Mapping the interaction of DNA with the Escherichia coli DNA polymerase clamp loader complex Nat. Struct. Mol. Biol. 12 2005 183 190
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 183-190
-
-
Goedken, E.R.1
Kazmirski, S.L.2
Bowman, G.D.3
O'Donnell, M.4
Kuriyan, J.5
-
22
-
-
0033568602
-
Division of labor - Sequential ATP hydrolysis drives assembly of a DNA polymerase sliding clamp around DNA
-
M.M. Hingorani, L.B. Bloom, M.F. Goodman, and M. O'Donnell Division of labor - sequential ATP hydrolysis drives assembly of a DNA polymerase sliding clamp around DNA EMBO J. 18 1999 5131 5144
-
(1999)
EMBO J.
, vol.18
, pp. 5131-5144
-
-
Hingorani, M.M.1
Bloom, L.B.2
Goodman, M.F.3
O'Donnell, M.4
-
23
-
-
33845296470
-
SPARX, a new environment for Cryo-EM image processing
-
M. Hohn, G. Tang, G. Goodyear, P.R. Baldwin, Z. Huang, P.A. Penczek, C. Yang, R.M. Glaeser, P.D. Adams, and S.J. Ludtke SPARX, a new environment for Cryo-EM image processing J. Struct. Biol. 157 2007 47 55
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 47-55
-
-
Hohn, M.1
Tang, G.2
Goodyear, G.3
Baldwin, P.R.4
Huang, Z.5
Penczek, P.A.6
Yang, C.7
Glaeser, R.M.8
Adams, P.D.9
Ludtke, S.J.10
-
24
-
-
33750983641
-
Helicase binding to DnaI exposes a cryptic DNA-binding site during helicase loading in Bacillus subtilis
-
C. Ioannou, P.M. Schaeffer, N.E. Dixon, and P. Soultanas Helicase binding to DnaI exposes a cryptic DNA-binding site during helicase loading in Bacillus subtilis Nucleic Acids Res. 34 2006 5247 5258
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 5247-5258
-
-
Ioannou, C.1
Schaeffer, P.M.2
Dixon, N.E.3
Soultanas, P.4
-
25
-
-
84867538324
-
The hexameric helicase DnaB adopts a nonplanar conformation during translocation
-
O. Itsathitphaisarn, R.A. Wing, W.K. Eliason, J. Wang, and T.A. Steitz The hexameric helicase DnaB adopts a nonplanar conformation during translocation Cell 151 2012 267 277
-
(2012)
Cell
, vol.151
, pp. 267-277
-
-
Itsathitphaisarn, O.1
Wing, R.A.2
Eliason, W.K.3
Wang, J.4
Steitz, T.A.5
-
26
-
-
0024406804
-
Structural and enzymatic studies of the T4 DNA replication system. II. ATPase properties of the polymerase accessory protein complex
-
T.C. Jarvis, L.S. Paul, J.W. Hockensmith, and P.H. von Hippel Structural and enzymatic studies of the T4 DNA replication system. II. ATPase properties of the polymerase accessory protein complex J. Biol. Chem. 264 1989 12717 12729
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 12717-12729
-
-
Jarvis, T.C.1
Paul, L.S.2
Hockensmith, J.W.3
Von Hippel, P.H.4
-
27
-
-
0035943342
-
Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase III
-
D. Jeruzalmi, M. O'Donnell, and J. Kuriyan Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase III Cell 106 2001 429 441
-
(2001)
Cell
, vol.106
, pp. 429-441
-
-
Jeruzalmi, D.1
O'Donnell, M.2
Kuriyan, J.3
-
28
-
-
0032562822
-
Does single-stranded DNA pass through the inner channel of the protein hexamer in the complex with the Escherichia coli DnaB Helicase? Fluorescence energy transfer studies
-
M.J. Jezewska, S. Rajendran, D. Bujalowska, and W. Bujalowski Does single-stranded DNA pass through the inner channel of the protein hexamer in the complex with the Escherichia coli DnaB Helicase? Fluorescence energy transfer studies J. Biol. Chem. 273 1998 10515 10529
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 10515-10529
-
-
Jezewska, M.J.1
Rajendran, S.2
Bujalowska, D.3
Bujalowski, W.4
-
29
-
-
80053564711
-
Replication initiation at the Escherichia coli chromosomal origin
-
J.M. Kaguni Replication initiation at the Escherichia coli chromosomal origin Curr. Opin. Chem. Biol. 15 2011 606 613
-
(2011)
Curr. Opin. Chem. Biol.
, vol.15
, pp. 606-613
-
-
Kaguni, J.M.1
-
30
-
-
0034636979
-
The 3′-tail of a forked-duplex sterically determines whether one or two DNA strands pass through the central channel of a replication-fork helicase
-
D.L. Kaplan The 3′-tail of a forked-duplex sterically determines whether one or two DNA strands pass through the central channel of a replication-fork helicase J. Mol. Biol. 301 2000 285 299
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 285-299
-
-
Kaplan, D.L.1
-
31
-
-
0033548710
-
DnaB from Thermus aquaticus unwinds forked duplex DNA with an asymmetric tail length dependence
-
D.L. Kaplan, and T.A. Steitz DnaB from Thermus aquaticus unwinds forked duplex DNA with an asymmetric tail length dependence J. Biol. Chem. 274 1999 6889 6897
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 6889-6897
-
-
Kaplan, D.L.1
Steitz, T.A.2
-
32
-
-
76949086750
-
Regulation of the replication cycle: Conserved and diverse regulatory systems for DnaA and oriC
-
T. Katayama, S. Ozaki, K. Keyamura, and K. Fujimitsu Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC Nat. Rev. Microbiol. 8 2010 163 170
-
(2010)
Nat. Rev. Microbiol.
, vol.8
, pp. 163-170
-
-
Katayama, T.1
Ozaki, S.2
Keyamura, K.3
Fujimitsu, K.4
-
33
-
-
84455163347
-
How a DNA polymerase clamp loader opens a sliding clamp
-
B.A. Kelch, D.L. Makino, M. O'Donnell, and J. Kuriyan How a DNA polymerase clamp loader opens a sliding clamp Science 334 2011 1675 1680
-
(2011)
Science
, vol.334
, pp. 1675-1680
-
-
Kelch, B.A.1
Makino, D.L.2
O'Donnell, M.3
Kuriyan, J.4
-
34
-
-
84859914242
-
Clamp loader ATPases and the evolution of DNA replication machinery
-
B.A. Kelch, D.L. Makino, M. O'Donnell, and J. Kuriyan Clamp loader ATPases and the evolution of DNA replication machinery BMC Biol. 10 2012 34
-
(2012)
BMC Biol.
, vol.10
, pp. 34
-
-
Kelch, B.A.1
Makino, D.L.2
O'Donnell, M.3
Kuriyan, J.4
-
35
-
-
0020355756
-
The Escherichia coli dnaC gene product. II. Purification, physical properties, and role in replication
-
J.A. Kobori, and A. Kornberg The Escherichia coli dnaC gene product. II. Purification, physical properties, and role in replication J. Biol. Chem. 257 1982 13763 13769
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 13763-13769
-
-
Kobori, J.A.1
Kornberg, A.2
-
36
-
-
0020405207
-
The Escherichia coli dnaC gene product. III. Properties of the dnaB-dnaC protein complex
-
J.A. Kobori, and A. Kornberg The Escherichia coli dnaC gene product. III. Properties of the dnaB-dnaC protein complex J. Biol. Chem. 257 1982 13770 13775
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 13770-13775
-
-
Kobori, J.A.1
Kornberg, A.2
-
37
-
-
0141484613
-
PRIMUS: A Windows PC-based system for small-angle scattering data analysis
-
P.V. Konarev, V.V. Volkov, A.V. Sokolova, M.H.J. Koch, and D.I. Svergun PRIMUS: a Windows PC-based system for small-angle scattering data analysis J. Appl. Crystallogr. 36 2003 1277 1282
-
(2003)
J. Appl. Crystallogr.
, vol.36
, pp. 1277-1282
-
-
Konarev, P.V.1
Volkov, V.V.2
Sokolova, A.V.3
Koch, M.H.J.4
Svergun, D.I.5
-
38
-
-
0026532095
-
DnaC protein contains a modified ATP-binding motif and belongs to a novel family of ATPases including also DnaA
-
E.V. Koonin DnaC protein contains a modified ATP-binding motif and belongs to a novel family of ATPases including also DnaA Nucleic Acids Res. 20 1992 1997
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 1997
-
-
Koonin, E.V.1
-
39
-
-
60649103238
-
Appion: An integrated, database-driven pipeline to facilitate em image processing
-
G.C. Lander, S.M. Stagg, N.R. Voss, A. Cheng, D. Fellmann, J. Pulokas, C. Yoshioka, C. Irving, A. Mulder, and P.W. Lau Appion: an integrated, database-driven pipeline to facilitate EM image processing J. Struct. Biol. 166 2009 95 102
-
(2009)
J. Struct. Biol.
, vol.166
, pp. 95-102
-
-
Lander, G.C.1
Stagg, S.M.2
Voss, N.R.3
Cheng, A.4
Fellmann, D.5
Pulokas, J.6
Yoshioka, C.7
Irving, C.8
Mulder, A.9
Lau, P.W.10
-
40
-
-
0031438369
-
Structural analyses of gp45 sliding clamp interactions during assembly of the bacteriophage T4 DNA polymerase holoenzyme. II. The Gp44/62 clamp loader interacts with a single defined face of the sliding clamp ring
-
G.J. Latham, D.J. Bacheller, P. Pietroni, and P.H. von Hippel Structural analyses of gp45 sliding clamp interactions during assembly of the bacteriophage T4 DNA polymerase holoenzyme. II. The Gp44/62 clamp loader interacts with a single defined face of the sliding clamp ring J. Biol. Chem. 272 1997 31677 31684
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 31677-31684
-
-
Latham, G.J.1
Bacheller, D.J.2
Pietroni, P.3
Von Hippel, P.H.4
-
41
-
-
0022977660
-
The Escherichia coli dnaB replication protein is a DNA helicase
-
J.H. LeBowitz, and R. McMacken The Escherichia coli dnaB replication protein is a DNA helicase J. Biol. Chem. 261 1986 4738 4748
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 4738-4748
-
-
Lebowitz, J.H.1
McMacken, R.2
-
42
-
-
63349092249
-
The crystal structure of a replicative hexameric helicase DnaC and its complex with single-stranded DNA
-
Y.H. Lo, K.L. Tsai, Y.J. Sun, W.T. Chen, C.Y. Huang, and C.D. Hsiao The crystal structure of a replicative hexameric helicase DnaC and its complex with single-stranded DNA Nucleic Acids Res. 37 2009 804 814
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 804-814
-
-
Lo, Y.H.1
Tsai, K.L.2
Sun, Y.J.3
Chen, W.T.4
Huang, C.Y.5
Hsiao, C.D.6
-
43
-
-
0035920173
-
Essential amino acids of Escherichia coli DnaC protein in an N-terminal domain interact with DnaB helicase
-
A.V. Ludlam, M.W. McNatt, K.M. Carr, and J.M. Kaguni Essential amino acids of Escherichia coli DnaC protein in an N-terminal domain interact with DnaB helicase J. Biol. Chem. 276 2001 27345 27353
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 27345-27353
-
-
Ludlam, A.V.1
McNatt, M.W.2
Carr, K.M.3
Kaguni, J.M.4
-
44
-
-
84864352599
-
ATP-dependent conformational dynamics underlie the functional asymmetry of the replicative helicase from a minimalist eukaryote
-
A.Y. Lyubimov, A. Costa, F. Bleichert, M.R. Botchan, and J.M. Berger ATP-dependent conformational dynamics underlie the functional asymmetry of the replicative helicase from a minimalist eukaryote Proc. Natl. Acad. Sci. USA 109 2012 11999 12004
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 11999-12004
-
-
Lyubimov, A.Y.1
Costa, A.2
Bleichert, F.3
Botchan, M.R.4
Berger, J.M.5
-
45
-
-
79551501146
-
Protein-protein interactions in the archaeal core replisome
-
S.A. MacNeill Protein-protein interactions in the archaeal core replisome Biochem. Soc. Trans. 39 2011 163 168
-
(2011)
Biochem. Soc. Trans.
, vol.39
, pp. 163-168
-
-
MacNeill, S.A.1
-
46
-
-
73649145533
-
Primase directs the release of DnaC from DnaB
-
M. Makowska-Grzyska, and J.M. Kaguni Primase directs the release of DnaC from DnaB Mol. Cell 37 2010 90 101
-
(2010)
Mol. Cell
, vol.37
, pp. 90-101
-
-
Makowska-Grzyska, M.1
Kaguni, J.M.2
-
47
-
-
0028102357
-
DnaA protein directs the binding of DnaB protein in initiation of DNA replication in Escherichia coli
-
J. Marszalek, and J.M. Kaguni DnaA protein directs the binding of DnaB protein in initiation of DNA replication in Escherichia coli J. Biol. Chem. 269 1994 4883 4890
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 4883-4890
-
-
Marszalek, J.1
Kaguni, J.M.2
-
48
-
-
79953194151
-
Helicases that underpin replication of protein-bound DNA in Escherichia coli
-
P. McGlynn Helicases that underpin replication of protein-bound DNA in Escherichia coli Biochem. Soc. Trans. 39 2011 606 610
-
(2011)
Biochem. Soc. Trans.
, vol.39
, pp. 606-610
-
-
McGlynn, P.1
-
49
-
-
25444480278
-
Open clamp structure in the clamp-loading complex visualized by electron microscopic image analysis
-
T. Miyata, H. Suzuki, T. Oyama, K. Mayanagi, Y. Ishino, and K. Morikawa Open clamp structure in the clamp-loading complex visualized by electron microscopic image analysis Proc. Natl. Acad. Sci. USA 102 2005 13795 13800
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 13795-13800
-
-
Miyata, T.1
Suzuki, H.2
Oyama, T.3
Mayanagi, K.4
Ishino, Y.5
Morikawa, K.6
-
50
-
-
55649098814
-
Structural synergy and molecular crosstalk between bacterial helicase loaders and replication initiators
-
M.L. Mott, J.P. Erzberger, M.M. Coons, and J.M. Berger Structural synergy and molecular crosstalk between bacterial helicase loaders and replication initiators Cell 135 2008 623 634
-
(2008)
Cell
, vol.135
, pp. 623-634
-
-
Mott, M.L.1
Erzberger, J.P.2
Coons, M.M.3
Berger, J.M.4
-
51
-
-
38949213341
-
Once in a lifetime: Strategies for preventing re-replication in prokaryotic and eukaryotic cells
-
O. Nielsen, and A. Løbner-Olesen Once in a lifetime: strategies for preventing re-replication in prokaryotic and eukaryotic cells EMBO Rep. 9 2008 151 156
-
(2008)
EMBO Rep.
, vol.9
, pp. 151-156
-
-
Nielsen, O.1
Løbner-Olesen, A.2
-
52
-
-
67650992092
-
Structure and flexibility within proteins as identified through small angle X-ray scattering
-
M. Pelikan, G.L. Hura, and M. Hammel Structure and flexibility within proteins as identified through small angle X-ray scattering Gen. Physiol. Biophys. 28 2009 174 189
-
(2009)
Gen. Physiol. Biophys.
, vol.28
, pp. 174-189
-
-
Pelikan, M.1
Hura, G.L.2
Hammel, M.3
-
53
-
-
4444221565
-
UCSF Chimera - A visualization system for exploratory research and analysis
-
E.F. Pettersen, T.D. Goddard, C.C. Huang, G.S. Couch, D.M. Greenblatt, E.C. Meng, and T.E. Ferrin UCSF Chimera - a visualization system for exploratory research and analysis J. Comput. Chem. 25 2004 1605 1612
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
54
-
-
0031435067
-
Structural analyses of gp45 sliding clamp interactions during assembly of the bacteriophage T4 DNA polymerase holoenzyme. I. Conformational changes within the gp44/62-gp45-ATP complex during clamp loading
-
P. Pietroni, M.C. Young, G.J. Latham, and P.H. von Hippel Structural analyses of gp45 sliding clamp interactions during assembly of the bacteriophage T4 DNA polymerase holoenzyme. I. Conformational changes within the gp44/62-gp45-ATP complex during clamp loading J. Biol. Chem. 272 1997 31666 31676
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 31666-31676
-
-
Pietroni, P.1
Young, M.C.2
Latham, G.J.3
Von Hippel, P.H.4
-
55
-
-
34047149973
-
Replisome mechanics: Insights into a twin DNA polymerase machine
-
R.T. Pomerantz, and M. O'Donnell Replisome mechanics: insights into a twin DNA polymerase machine Trends Microbiol. 15 2007 156 164
-
(2007)
Trends Microbiol.
, vol.15
, pp. 156-164
-
-
Pomerantz, R.T.1
O'Donnell, M.2
-
56
-
-
37149049312
-
X-ray solution scattering (SAXS) combined with crystallography and computation: Defining accurate macromolecular structures, conformations and assemblies in solution
-
C.D. Putnam, M. Hammel, G.L. Hura, and J.A. Tainer X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution Q. Rev. Biophys. 40 2007 191 285
-
(2007)
Q. Rev. Biophys.
, vol.40
, pp. 191-285
-
-
Putnam, C.D.1
Hammel, M.2
Hura, G.L.3
Tainer, J.A.4
-
57
-
-
70350751416
-
Concerted loading of Mcm2-7 double hexamers around DNA during DNA replication origin licensing
-
D. Remus, F. Beuron, G. Tolun, J.D. Griffith, E.P. Morris, and J.F. Diffley Concerted loading of Mcm2-7 double hexamers around DNA during DNA replication origin licensing Cell 139 2009 719 730
-
(2009)
Cell
, vol.139
, pp. 719-730
-
-
Remus, D.1
Beuron, F.2
Tolun, G.3
Griffith, J.D.4
Morris, E.P.5
Diffley, J.F.6
-
58
-
-
77958475756
-
DnaB helicase activity is modulated by DNA geometry and force
-
N. Ribeck, D.L. Kaplan, I. Bruck, and O.A. Saleh DnaB helicase activity is modulated by DNA geometry and force Biophys. J. 99 2010 2170 2179
-
(2010)
Biophys. J.
, vol.99
, pp. 2170-2179
-
-
Ribeck, N.1
Kaplan, D.L.2
Bruck, I.3
Saleh, O.A.4
-
59
-
-
0029147295
-
A structural model for the Escherichia coli DnaB helicase based on electron microscopy data
-
M.C. San Martin, N.P. Stamford, N. Dammerova, N.E. Dixon, and J.M. Carazo A structural model for the Escherichia coli DnaB helicase based on electron microscopy data J. Struct. Biol. 114 1995 167 176
-
(1995)
J. Struct. Biol.
, vol.114
, pp. 167-176
-
-
San Martin, M.C.1
Stamford, N.P.2
Dammerova, N.3
Dixon, N.E.4
Carazo, J.M.5
-
60
-
-
0032522423
-
Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase DnaB and its loading partner DnaC
-
C. San Martin, M. Radermacher, B. Wolpensinger, A. Engel, C.S. Miles, N.E. Dixon, and J.M. Carazo Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase DnaB and its loading partner DnaC Structure 6 1998 501 509
-
(1998)
Structure
, vol.6
, pp. 501-509
-
-
San Martin, C.1
Radermacher, M.2
Wolpensinger, B.3
Engel, A.4
Miles, C.S.5
Dixon, N.E.6
Carazo, J.M.7
-
61
-
-
0032716810
-
Crystal structure of the helicase domain from the replicative helicase-primase of bacteriophage T7
-
M.R. Sawaya, S. Guo, S. Tabor, C.C. Richardson, and T. Ellenberger Crystal structure of the helicase domain from the replicative helicase-primase of bacteriophage T7 Cell 99 1999 167 177
-
(1999)
Cell
, vol.99
, pp. 167-177
-
-
Sawaya, M.R.1
Guo, S.2
Tabor, S.3
Richardson, C.C.4
Ellenberger, T.5
-
62
-
-
18344385508
-
Protein - Protein interactions in the eubacterial replisome
-
P.M. Schaeffer, M.J. Headlam, and N.E. Dixon Protein - protein interactions in the eubacterial replisome IUBMB Life 57 2005 5 12
-
(2005)
IUBMB Life
, vol.57
, pp. 5-12
-
-
Schaeffer, P.M.1
Headlam, M.J.2
Dixon, N.E.3
-
63
-
-
44949165726
-
Image processing for electron microscopy single-particle analysis using XMIPP
-
S.H. Scheres, R. Núñez-Ramírez, C.O. Sorzano, J.M. Carazo, and R. Marabini Image processing for electron microscopy single-particle analysis using XMIPP Nat. Protoc. 3 2008 977 990
-
(2008)
Nat. Protoc.
, vol.3
, pp. 977-990
-
-
Scheres, S.H.1
Núñez-Ramírez, R.2
Sorzano, C.O.3
Carazo, J.M.4
Marabini, R.5
-
64
-
-
77954280480
-
FoXS: A web server for rapid computation and fitting of SAXS profiles
-
D. Schneidman-Duhovny, M. Hammel, and A. Sali FoXS: a web server for rapid computation and fitting of SAXS profiles Nucleic Acids Res. 38 Web Server issue 2010 W540 W544
-
(2010)
Nucleic Acids Res.
, vol.38
, Issue.WEB SERVER ISSUE
-
-
Schneidman-Duhovny, D.1
Hammel, M.2
Sali, A.3
-
65
-
-
0033812649
-
The interaction domains of the DnaA and DnaB replication proteins of Escherichia coli
-
H. Seitz, C. Weigel, and W. Messer The interaction domains of the DnaA and DnaB replication proteins of Escherichia coli Mol. Microbiol. 37 2000 1270 1279
-
(2000)
Mol. Microbiol.
, vol.37
, pp. 1270-1279
-
-
Seitz, H.1
Weigel, C.2
Messer, W.3
-
66
-
-
33646778502
-
Communication between subunits within an archaeal clamp-loader complex
-
A. Seybert, M.R. Singleton, N. Cook, D.R. Hall, and D.B. Wigley Communication between subunits within an archaeal clamp-loader complex EMBO J. 25 2006 2209 2218
-
(2006)
EMBO J.
, vol.25
, pp. 2209-2218
-
-
Seybert, A.1
Singleton, M.R.2
Cook, N.3
Hall, D.R.4
Wigley, D.B.5
-
67
-
-
65549110769
-
The mechanism of ATP-dependent primer-template recognition by a clamp loader complex
-
K.R. Simonetta, S.L. Kazmirski, E.R. Goedken, A.J. Cantor, B.A. Kelch, R. McNally, S.N. Seyedin, D.L. Makino, M. O'Donnell, and J. Kuriyan The mechanism of ATP-dependent primer-template recognition by a clamp loader complex Cell 137 2009 659 671
-
(2009)
Cell
, vol.137
, pp. 659-671
-
-
Simonetta, K.R.1
Kazmirski, S.L.2
Goedken, E.R.3
Cantor, A.J.4
Kelch, B.A.5
McNally, R.6
Seyedin, S.N.7
Makino, D.L.8
O'Donnell, M.9
Kuriyan, J.10
-
68
-
-
0037559627
-
Structure of the Rho transcription terminator: Mechanism of mRNA recognition and helicase loading
-
E. Skordalakes, and J.M. Berger Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading Cell 114 2003 135 146
-
(2003)
Cell
, vol.114
, pp. 135-146
-
-
Skordalakes, E.1
Berger, J.M.2
-
69
-
-
0037082430
-
A functional interaction between the putative primosomal protein DnaI and the main replicative DNA helicase DnaB in Bacillus
-
P. Soultanas A functional interaction between the putative primosomal protein DnaI and the main replicative DNA helicase DnaB in Bacillus Nucleic Acids Res. 30 2002 966 974
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 966-974
-
-
Soultanas, P.1
-
70
-
-
84858860484
-
Loading mechanisms of ring helicases at replication origins
-
P. Soultanas Loading mechanisms of ring helicases at replication origins Mol. Microbiol. 84 2012 6 16
-
(2012)
Mol. Microbiol.
, vol.84
, pp. 6-16
-
-
Soultanas, P.1
-
71
-
-
20544468931
-
Automated molecular microscopy: The new Leginon system
-
C. Suloway, J. Pulokas, D. Fellmann, A. Cheng, F. Guerra, J. Quispe, S. Stagg, C.S. Potter, and B. Carragher Automated molecular microscopy: the new Leginon system J. Struct. Biol. 151 2005 41 60
-
(2005)
J. Struct. Biol.
, vol.151
, pp. 41-60
-
-
Suloway, C.1
Pulokas, J.2
Fellmann, D.3
Cheng, A.4
Guerra, F.5
Quispe, J.6
Stagg, S.7
Potter, C.S.8
Carragher, B.9
-
72
-
-
33845332754
-
EMAN2: An extensible image processing suite for electron microscopy
-
G. Tang, L. Peng, P.R. Baldwin, D.S. Mann, W. Jiang, I. Rees, and S.J. Ludtke EMAN2: an extensible image processing suite for electron microscopy J. Struct. Biol. 157 2007 38 46
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 38-46
-
-
Tang, G.1
Peng, L.2
Baldwin, P.R.3
Mann, D.S.4
Jiang, W.5
Rees, I.6
Ludtke, S.J.7
-
73
-
-
0028049949
-
Identification of a domain of Escherichia coli primase required for functional interaction with the DnaB helicase at the replication fork
-
K. Tougu, H. Peng, and K.J. Marians Identification of a domain of Escherichia coli primase required for functional interaction with the DnaB helicase at the replication fork J. Biol. Chem. 269 1994 4675 4682
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 4675-4682
-
-
Tougu, K.1
Peng, H.2
Marians, K.J.3
-
74
-
-
70350022740
-
Molecular interplay between the replicative helicase DnaC and its loader protein DnaI from Geobacillus kaustophilus
-
K.L. Tsai, Y.H. Lo, Y.J. Sun, and C.D. Hsiao Molecular interplay between the replicative helicase DnaC and its loader protein DnaI from Geobacillus kaustophilus J. Mol. Biol. 393 2009 1056 1069
-
(2009)
J. Mol. Biol.
, vol.393
, pp. 1056-1069
-
-
Tsai, K.L.1
Lo, Y.H.2
Sun, Y.J.3
Hsiao, C.D.4
-
75
-
-
0033081486
-
The internal workings of a DNA polymerase clamp-loading machine
-
J. Turner, M.M. Hingorani, Z. Kelman, and M. O'Donnell The internal workings of a DNA polymerase clamp-loading machine EMBO J. 18 1999 771 783
-
(1999)
EMBO J.
, vol.18
, pp. 771-783
-
-
Turner, J.1
Hingorani, M.M.2
Kelman, Z.3
O'Donnell, M.4
-
76
-
-
0038637844
-
A two-protein strategy for the functional loading of a cellular replicative DNA helicase
-
M. Velten, S. McGovern, S. Marsin, S.D. Ehrlich, P. Noirot, and P. Polard A two-protein strategy for the functional loading of a cellular replicative DNA helicase Mol. Cell 11 2003 1009 1020
-
(2003)
Mol. Cell
, vol.11
, pp. 1009-1020
-
-
Velten, M.1
McGovern, S.2
Marsin, S.3
Ehrlich, S.D.4
Noirot, P.5
Polard, P.6
-
77
-
-
0024520416
-
The dnaB-dnaC replication protein complex of Escherichia coli. II. Role of the complex in mobilizing dnaB functions
-
E. Wahle, R.S. Lasken, and A. Kornberg The dnaB-dnaC replication protein complex of Escherichia coli. II. Role of the complex in mobilizing dnaB functions J. Biol. Chem. 264 1989 2469 2475
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 2469-2475
-
-
Wahle, E.1
Lasken, R.S.2
Kornberg, A.3
-
78
-
-
37849024100
-
The structure of a DnaB-family replicative helicase and its interactions with primase
-
G. Wang, M.G. Klein, E. Tokonzaba, Y. Zhang, L.G. Holden, and X.S. Chen The structure of a DnaB-family replicative helicase and its interactions with primase Nat. Struct. Mol. Biol. 15 2008 94 100
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 94-100
-
-
Wang, G.1
Klein, M.G.2
Tokonzaba, E.3
Zhang, Y.4
Holden, L.G.5
Chen, X.S.6
-
79
-
-
0000579776
-
Interaction of Escherichia coli dnaB and dnaC(D) gene products in vitro
-
S. Wickner, and J. Hurwitz Interaction of Escherichia coli dnaB and dnaC(D) gene products in vitro Proc. Natl. Acad. Sci. USA 72 1975 921 925
-
(1975)
Proc. Natl. Acad. Sci. USA
, vol.72
, pp. 921-925
-
-
Wickner, S.1
Hurwitz, J.2
-
80
-
-
0036385791
-
Flexibility of the rings: Structural asymmetry in the DnaB hexameric helicase
-
S. Yang, X. Yu, M.S. VanLoock, M.J. Jezewska, W. Bujalowski, and E.H. Egelman Flexibility of the rings: structural asymmetry in the DnaB hexameric helicase J. Mol. Biol. 321 2002 839 849
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 839-849
-
-
Yang, S.1
Yu, X.2
Vanloock, M.S.3
Jezewska, M.J.4
Bujalowski, W.5
Egelman, E.H.6
-
81
-
-
33644531259
-
The structure of a ring-opened proliferating cell nuclear antigen-replication factor C complex revealed by fluorescence energy transfer
-
Z. Zhuang, B.L. Yoder, P.M. Burgers, and S.J. Benkovic The structure of a ring-opened proliferating cell nuclear antigen-replication factor C complex revealed by fluorescence energy transfer Proc. Natl. Acad. Sci. USA 103 2006 2546 2551
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 2546-2551
-
-
Zhuang, Z.1
Yoder, B.L.2
Burgers, P.M.3
Benkovic, S.J.4
-
82
-
-
0033377664
-
EMAN: Semiautomated software for high-resolution single-particle reconstructions
-
S.J. Ludtke, P.R. Baldwin, and W. Chiu EMAN: semiautomated software for high-resolution single-particle reconstructions J. Struct. Biol. 128 1999 82 97
-
(1999)
J. Struct. Biol.
, vol.128
, pp. 82-97
-
-
Ludtke, S.J.1
Baldwin, P.R.2
Chiu, W.3
-
83
-
-
0038441501
-
Accurate determination of local defocus and specimen tilt in electron microscopy
-
J.A. Mindell, and N. Grigorieff Accurate determination of local defocus and specimen tilt in electron microscopy J. Struct. Biol. 142 2003 334 347
-
(2003)
J. Struct. Biol.
, vol.142
, pp. 334-347
-
-
Mindell, J.A.1
Grigorieff, N.2
-
84
-
-
16244396466
-
Maximum-likelihood multi-reference refinement for electron microscopy images
-
S.H. Scheres, M. Valle, R. Nuñez, C.O. Sorzano, R. Marabini, G.T. Herman, and J.M. Carazo Maximum-likelihood multi-reference refinement for electron microscopy images J. Mol. Biol. 348 2005 139 149
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 139-149
-
-
Scheres, S.H.1
Valle, M.2
Nuñez, R.3
Sorzano, C.O.4
Marabini, R.5
Herman, G.T.6
Carazo, J.M.7
-
85
-
-
71049139404
-
Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization
-
S.H. Scheres, R. Melero, M. Valle, and J.M. Carazo Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization Structure 17 2009 1563 1572
-
(2009)
Structure
, vol.17
, pp. 1563-1572
-
-
Scheres, S.H.1
Melero, R.2
Valle, M.3
Carazo, J.M.4
-
86
-
-
58049204808
-
SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs
-
T.R. Shaikh, H. Gao, W.T. Baxter, F.J. Asturias, N. Boisset, A. Leith, and J. Frank SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs Nat. Protoc. 3 2008 1941 1974
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1941-1974
-
-
Shaikh, T.R.1
Gao, H.2
Baxter, W.T.3
Asturias, F.J.4
Boisset, N.5
Leith, A.6
Frank, J.7
-
87
-
-
63649113687
-
DoG Picker and TiltPicker: Software tools to facilitate particle selection in single particle electron microscopy
-
N.R. Voss, C.K. Yoshioka, M. Radermacher, C.S. Potter, and B. Carragher DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy J. Struct. Biol. 166 2009 205 213
-
(2009)
J. Struct. Biol.
, vol.166
, pp. 205-213
-
-
Voss, N.R.1
Yoshioka, C.K.2
Radermacher, M.3
Potter, C.S.4
Carragher, B.5
-
88
-
-
34548309353
-
Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation
-
C. Yoshioka, J. Pulokas, D. Fellmann, C.S. Potter, R.A. Milligan, and B. Carragher Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation J. Struct. Biol. 159 2007 335 346
-
(2007)
J. Struct. Biol.
, vol.159
, pp. 335-346
-
-
Yoshioka, C.1
Pulokas, J.2
Fellmann, D.3
Potter, C.S.4
Milligan, R.A.5
Carragher, B.6
|