The CRISPR system - Keeping zebrafish gene targeting fresh

Zebrafish

Volumn 10, Issue 1, 2013, Pages 116-118

  Blackburn, Patrick R ^a   Campbell, Jarryd M ^a   Clark, Karl J ^a   Ekker, Stephen C ^a  

^a MAYO GRADUATE SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; GENE TARGETING; GENETICS; GENOME; INVERTED REPEAT; METABOLISM; METHODOLOGY; PLASMID; REVIEW; ZEBRA FISH;

ANIMALS; GENE TARGETING; GENOME; INVERTED REPEAT SEQUENCES; PLASMIDS; ZEBRAFISH;

BACTERIA (MICROORGANISMS); DANIO RERIO; TELEOSTEI;

EID: 84876278422     PISSN: 15458547     EISSN: None     Source Type: Journal    
DOI: 10.1089/zeb.2013.9999     Document Type: Review

References (21)

1. Patowary A, Purkanti R, Singh M, et al. A sequence-based variation map of zebrafish. Zebrafish 2013;10:15-20.
2. Moore FE, Reyon D, Sander JD, et al. Improved somatic mutagenesis in zebrafish using transcription activator-like effector nucleases (TALENs). PLoS ONE 2012;7:e37877.
3. Bogdanove AJ, Voytas DF. TAL effectors: Customizable proteins for DNA targeting. Science 2011;333:1843-1846.
4. Cade L, Reyon D, Hwang WY, et al. Highly efficient gener-ation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs. Nucleic Acids Res 2012;40:8001-8010.
5. Ramirez CL, Certo MT, Mussolino C, et al. Engineered zinc finger nickases induce homology-directed repair with reduced mutagenic effects. Nucleic Acids Res 2012;40:5560-5568.
6. Bedell VM, Wang Y, Campbell JM, et al. In vivo genome editing using a high-efficiency TALEN system. Nature 2012;491:114-118.
7. Neff KL, Argue DP, Ma AC, Lee HB, Clark KJ. Mojo hand, a TALEN design tool for genome editing applications. BMC Bioinformatics 2013;14:1.
8. Zu Y, Tong X, Wang Z, et al. TALEN-mediated precise ge-nome modification by homologous recombination in zeb-rafish. Nat Methods Published Online First: 24 February 2013. doi:10.1038/nmeth.2374.
9. Wiedenheft B, Sternberg SH, Doudna JA. RNA-guided ge-netic silencing systems in bacteria and archaea. Nature 2012;482:331-338.
10. Deltcheva E, Chylinski K, Sharma CM, et al. CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 2011;471:602-607.
11. Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 2012; 337:816-821.
12. Hwang WY, Fu Y, Reyon D, et al. Efficient genome editing in zebrafish using a CRISPR-Cas system. Nat Biotechnol 2013;:1-3.
13. Mali P, Yang L, Esvelt KM, et al. RNA-guided human ge-nome engineering via Cas9. Science 2013;339:823-826.
14. Cermak T, Doyle EL, Christian M, et al. Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic Acids Res 2011;39:82.
15. Reyon D, Tsai SQ, Khayter C, Foden JA, Sander JD, Joung JK. FLASH assembly of TALENs for high-throughput ge-nome editing. Nat Biotechnol 2012;30:460-465.
16. Ding Q, Lee Y-K, Schaefer EAK, et al. A TALEN genome-editing system for generating human stem cell-based disease models. Cell Stem Cell 2013;12:238-251.
17. Huang P, Xiao A, Zhou M, Zhu Z, Lin S, Zhang B. Heritable gene targeting in zebrafish using customized TALENs. Nat Biotechnol 2011;29:699-700.
18. Gupta A, Christensen RG, Rayla AL, Lakshmanan A, Stormo GD, Wolfe SA. An optimized two-finger archive for ZFN-mediated gene targeting. Nature Methods 2012;9:588-590.
19. Sander JD, Dahlborg EJ, Goodwin MJ, et al. Selection-free zinc-finger-nuclease engineering by context-dependent as-sembly (CoDA). Nature Methods 2010;8:67-69.
20. Chen S, Oikonomou G, Chiu CN, et al. A large-scale in vivo analysis reveals that TALENs are significantly more muta-genic than ZFNs generated using context-dependent as-sembly. Nucleic Acids Res 2013;41:2769-2778.
21. Sander JD, Cade L, Khayter C, et al. Targeted gene disrup-tion in somatic zebrafish cells using engineered TALENs. Nat Biotechnol 2011;29:697-698.