-
1
-
-
40349106161
-
The landscape of human proteins interacting with viruses and other pathogens
-
Dyer MD, Murali TM, Sobral BW, (2008) The landscape of human proteins interacting with viruses and other pathogens. PLoS Pathog 4: e32.
-
(2008)
PLoS Pathog
, vol.4
-
-
Dyer, M.D.1
Murali, T.M.2
Sobral, B.W.3
-
2
-
-
0035811625
-
Hepatitis C virus infection
-
Lauer GM, Walker BD, (2001) Hepatitis C virus infection. N Engl J Med 345: 41-52.
-
(2001)
N Engl J Med
, vol.345
, pp. 41-52
-
-
Lauer, G.M.1
Walker, B.D.2
-
3
-
-
68049123267
-
Virus-host interactions: from systems biology to translational research
-
Peng X, Chan EY, Li Y, Diamond DL, Korth MJ, et al. (2009) Virus-host interactions: from systems biology to translational research. Curr Opin Microbiol 12: 432-438.
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 432-438
-
-
Peng, X.1
Chan, E.Y.2
Li, Y.3
Diamond, D.L.4
Korth, M.J.5
-
4
-
-
68049131345
-
Connecting viral with cellular interactomes
-
Bailer SM, Haas J, (2009) Connecting viral with cellular interactomes. Curr Opin Microbiol 12: 453-459.
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 453-459
-
-
Bailer, S.M.1
Haas, J.2
-
5
-
-
63549126161
-
Directing experimental biology: a case study in mitochondrial biogenesis
-
Hibbs MA, Myers CL, Huttenhower C, Hess DC, Li K, et al. (2009) Directing experimental biology: a case study in mitochondrial biogenesis. PLoS Comput Biol 5: e1000322.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Hibbs, M.A.1
Myers, C.L.2
Huttenhower, C.3
Hess, D.C.4
Li, K.5
-
6
-
-
67249143012
-
Host cell factors in HIV replication: meta-analysis of genome-wide studies
-
Bushman FD, Malani N, Fernandes J, D'Orso I, Cagney G, et al. (2009) Host cell factors in HIV replication: meta-analysis of genome-wide studies. PLoS Pathog 5: e1000437.
-
(2009)
PLoS Pathog
, vol.5
-
-
Bushman, F.D.1
Malani, N.2
Fernandes, J.3
D'Orso, I.4
Cagney, G.5
-
7
-
-
76349125292
-
Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana
-
Lee I, Ambaru B, Thakkar P, Marcotte EM, Rhee SY, (2010) Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana. Nat Biotechnol 28: 149-156.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 149-156
-
-
Lee, I.1
Ambaru, B.2
Thakkar, P.3
Marcotte, E.M.4
Rhee, S.Y.5
-
8
-
-
35349024501
-
Network modeling links breast cancer susceptibility and centrosome dysfunction
-
Pujana MA, Han JD, Starita LM, Stevens KN, Tewari M, et al. (2007) Network modeling links breast cancer susceptibility and centrosome dysfunction. Nat Genet 39: 1338-1349.
-
(2007)
Nat Genet
, vol.39
, pp. 1338-1349
-
-
Pujana, M.A.1
Han, J.D.2
Starita, L.M.3
Stevens, K.N.4
Tewari, M.5
-
9
-
-
0032582538
-
Binding of hepatitis C virus to CD81
-
Pileri P, Uematsu Y, Campagnoli S, Galli G, Falugi F, et al. (1998) Binding of hepatitis C virus to CD81. Science 282: 938-941.
-
(1998)
Science
, vol.282
, pp. 938-941
-
-
Pileri, P.1
Uematsu, Y.2
Campagnoli, S.3
Galli, G.4
Falugi, F.5
-
10
-
-
0033607281
-
Hepatitis C virus and other flaviviridae viruses enter cells via low density lipoprotein receptor
-
Agnello V, Abel G, Elfahal M, Knight GB, Zhang QX, (1999) Hepatitis C virus and other flaviviridae viruses enter cells via low density lipoprotein receptor. Proc Natl Acad Sci U S A 96: 12766-12771.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 12766-12771
-
-
Agnello, V.1
Abel, G.2
Elfahal, M.3
Knight, G.B.4
Zhang, Q.X.5
-
11
-
-
18644378971
-
The human scavenger receptor class B type I is a novel candidate receptor for the hepatitis C virus
-
Scarselli E, Ansuini H, Cerino R, Roccasecca RM, Acali S, et al. (2002) The human scavenger receptor class B type I is a novel candidate receptor for the hepatitis C virus. EMBO J 21: 5017-5025.
-
(2002)
EMBO J
, vol.21
, pp. 5017-5025
-
-
Scarselli, E.1
Ansuini, H.2
Cerino, R.3
Roccasecca, R.M.4
Acali, S.5
-
12
-
-
34147219730
-
Claudin-1 is a hepatitis C virus co-receptor required for a late step in entry
-
Evans MJ, von Hahn T, Tscherne DM, Syder AJ, Panis M, et al. (2007) Claudin-1 is a hepatitis C virus co-receptor required for a late step in entry. Nature 446: 801-805.
-
(2007)
Nature
, vol.446
, pp. 801-805
-
-
Evans, M.J.1
von Hahn, T.2
Tscherne, D.M.3
Syder, A.J.4
Panis, M.5
-
13
-
-
36048954580
-
Claudin-6 and claudin-9 function as additional coreceptors for hepatitis C virus
-
Zheng A, Yuan F, Li Y, Zhu F, Hou P, et al. (2007) Claudin-6 and claudin-9 function as additional coreceptors for hepatitis C virus. J Virol 81: 12465-12471.
-
(2007)
J Virol
, vol.81
, pp. 12465-12471
-
-
Zheng, A.1
Yuan, F.2
Li, Y.3
Zhu, F.4
Hou, P.5
-
14
-
-
60149090028
-
Human occludin is a hepatitis C virus entry factor required for infection of mouse cells
-
Ploss A, Evans MJ, Gaysinskaya VA, Panis M, You H, et al. (2009) Human occludin is a hepatitis C virus entry factor required for infection of mouse cells. Nature 457: 882-886.
-
(2009)
Nature
, vol.457
, pp. 882-886
-
-
Ploss, A.1
Evans, M.J.2
Gaysinskaya, V.A.3
Panis, M.4
You, H.5
-
15
-
-
50149090865
-
Protein kinase A-dependent step(s) in hepatitis C virus entry and infectivity
-
Farquhar MJ, Harris HJ, Diskar M, Jones S, Mee CJ, et al. (2008) Protein kinase A-dependent step(s) in hepatitis C virus entry and infectivity. J Virol 82: 8797-8811.
-
(2008)
J Virol
, vol.82
, pp. 8797-8811
-
-
Farquhar, M.J.1
Harris, H.J.2
Diskar, M.3
Jones, S.4
Mee, C.J.5
-
16
-
-
50149109390
-
CD81 is a central regulator of cellular events required for hepatitis C virus infection of human hepatocytes
-
Brazzoli M, Bianchi A, Filippini S, Weiner A, Zhu Q, et al. (2008) CD81 is a central regulator of cellular events required for hepatitis C virus infection of human hepatocytes. J Virol 82: 8316-8329.
-
(2008)
J Virol
, vol.82
, pp. 8316-8329
-
-
Brazzoli, M.1
Bianchi, A.2
Filippini, S.3
Weiner, A.4
Zhu, Q.5
-
17
-
-
33745771735
-
Hepatitis C virus entry depends on clathrin-mediated endocytosis
-
Blanchard E, Belouzard S, Goueslain L, Wakita T, Dubuisson J, et al. (2006) Hepatitis C virus entry depends on clathrin-mediated endocytosis. J Virol 80: 6964-6972.
-
(2006)
J Virol
, vol.80
, pp. 6964-6972
-
-
Blanchard, E.1
Belouzard, S.2
Goueslain, L.3
Wakita, T.4
Dubuisson, J.5
-
18
-
-
3042514191
-
Coexpression analysis of human genes across many microarray data sets
-
Lee HK, Hsu AK, Sajdak J, Qin J, Pavlidis P, (2004) Coexpression analysis of human genes across many microarray data sets. Genome Res 14: 1085-1094.
-
(2004)
Genome Res
, vol.14
, pp. 1085-1094
-
-
Lee, H.K.1
Hsu, A.K.2
Sajdak, J.3
Qin, J.4
Pavlidis, P.5
-
19
-
-
55549117151
-
Hepatitis C virus infection protein network
-
de Chassey B, Navratil V, Tafforeau L, Hiet MS, Aublin-Gex A, et al. (2008) Hepatitis C virus infection protein network. Mol Syst Biol 4: 230.
-
(2008)
Mol Syst Biol
, vol.4
, pp. 230
-
-
de Chassey, B.1
Navratil, V.2
Tafforeau, L.3
Hiet, M.S.4
Aublin-Gex, A.5
-
20
-
-
44249113841
-
Design logic of a cannabinoid receptor signaling network that triggers neurite outgrowth
-
Bromberg KD, Ma'ayan A, Neves SR, Iyengar R, (2008) Design logic of a cannabinoid receptor signaling network that triggers neurite outgrowth. Science 320: 903-909.
-
(2008)
Science
, vol.320
, pp. 903-909
-
-
Bromberg, K.D.1
Ma'ayan, A.2
Neves, S.R.3
Iyengar, R.4
-
21
-
-
33646568805
-
Gene prioritization through genomic data fusion
-
Aerts S, Lambrechts D, Maity S, Van Loo P, Coessens B, et al. (2006) Gene prioritization through genomic data fusion. Nat Biotechnol 24: 537-544.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 537-544
-
-
Aerts, S.1
Lambrechts, D.2
Maity, S.3
Van Loo, P.4
Coessens, B.5
-
23
-
-
34547788145
-
Monitoring the antiviral effect of alpha interferon on individual cells
-
Kim CS, Jung JH, Wakita T, Yoon SK, Jang SK, (2007) Monitoring the antiviral effect of alpha interferon on individual cells. J Virol 81: 8814-8820.
-
(2007)
J Virol
, vol.81
, pp. 8814-8820
-
-
Kim, C.S.1
Jung, J.H.2
Wakita, T.3
Yoon, S.K.4
Jang, S.K.5
-
24
-
-
78951472169
-
Biochemical and morphological properties of hepatitis C virus particles and determination of their lipidome
-
Merz A, Long G, Hiet MS, Brugger B, Chlanda P, et al. (2011) Biochemical and morphological properties of hepatitis C virus particles and determination of their lipidome. J Biol Chem 286: 3018-3032.
-
(2011)
J Biol Chem
, vol.286
, pp. 3018-3032
-
-
Merz, A.1
Long, G.2
Hiet, M.S.3
Brugger, B.4
Chlanda, P.5
-
25
-
-
21544440397
-
Robust hepatitis C virus infection in vitro
-
Zhong J, Gastaminza P, Cheng G, Kapadia S, Kato T, et al. (2005) Robust hepatitis C virus infection in vitro. Proc Natl Acad Sci U S A 102: 9294-9299.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 9294-9299
-
-
Zhong, J.1
Gastaminza, P.2
Cheng, G.3
Kapadia, S.4
Kato, T.5
-
26
-
-
0038471344
-
Hepatitis C virus glycoproteins mediate pH-dependent cell entry of pseudotyped retroviral particles
-
Hsu M, Zhang J, Flint M, Logvinoff C, Cheng-Mayer C, et al. (2003) Hepatitis C virus glycoproteins mediate pH-dependent cell entry of pseudotyped retroviral particles. Proc Natl Acad Sci U S A 100: 7271-7276.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 7271-7276
-
-
Hsu, M.1
Zhang, J.2
Flint, M.3
Logvinoff, C.4
Cheng-Mayer, C.5
-
29
-
-
43249098191
-
Correlation of the tight junction-like distribution of Claudin-1 to the cellular tropism of hepatitis C virus
-
Yang W, Qiu C, Biswas N, Jin J, Watkins SC, et al. (2008) Correlation of the tight junction-like distribution of Claudin-1 to the cellular tropism of hepatitis C virus. J Biol Chem 283: 8643-8653.
-
(2008)
J Biol Chem
, vol.283
, pp. 8643-8653
-
-
Yang, W.1
Qiu, C.2
Biswas, N.3
Jin, J.4
Watkins, S.C.5
-
30
-
-
59649117842
-
Tight junction proteins claudin-1 and occludin control hepatitis C virus entry and are downregulated during infection to prevent superinfection
-
Liu S, Yang W, Shen L, Turner JR, Coyne CB, et al. (2009) Tight junction proteins claudin-1 and occludin control hepatitis C virus entry and are downregulated during infection to prevent superinfection. J Virol 83: 2011-2014.
-
(2009)
J Virol
, vol.83
, pp. 2011-2014
-
-
Liu, S.1
Yang, W.2
Shen, L.3
Turner, J.R.4
Coyne, C.B.5
-
31
-
-
0036899363
-
The third dimension for protein interactions and complexes
-
Aloy P, Russell RB, (2002) The third dimension for protein interactions and complexes. Trends Biochem Sci 27: 633-638.
-
(2002)
Trends Biochem Sci
, vol.27
, pp. 633-638
-
-
Aloy, P.1
Russell, R.B.2
-
32
-
-
33846080260
-
A systems biology analysis of the Drosophila phagosome
-
Stuart LM, Boulais J, Charriere GM, Hennessy EJ, Brunet S, et al. (2007) A systems biology analysis of the Drosophila phagosome. Nature 445: 95-101.
-
(2007)
Nature
, vol.445
, pp. 95-101
-
-
Stuart, L.M.1
Boulais, J.2
Charriere, G.M.3
Hennessy, E.J.4
Brunet, S.5
-
33
-
-
67849130819
-
A computational screen for regulators of oxidative phosphorylation implicates SLIRP in mitochondrial RNA homeostasis
-
Baughman JM, Nilsson R, Gohil VM, Arlow DH, Gauhar Z, et al. (2009) A computational screen for regulators of oxidative phosphorylation implicates SLIRP in mitochondrial RNA homeostasis. PLoS Genet 5: e1000590.
-
(2009)
PLoS Genet
, vol.5
-
-
Baughman, J.M.1
Nilsson, R.2
Gohil, V.M.3
Arlow, D.H.4
Gauhar, Z.5
-
34
-
-
35948987161
-
Integrative microarray analysis of pathways dysregulated in metastatic prostate cancer
-
Setlur SR, Royce TE, Sboner A, Mosquera JM, Demichelis F, et al. (2007) Integrative microarray analysis of pathways dysregulated in metastatic prostate cancer. Cancer Res 67: 10296-10303.
-
(2007)
Cancer Res
, vol.67
, pp. 10296-10303
-
-
Setlur, S.R.1
Royce, T.E.2
Sboner, A.3
Mosquera, J.M.4
Demichelis, F.5
-
35
-
-
76749108989
-
Human host factors required for influenza virus replication
-
Konig R, Stertz S, Zhou Y, Inoue A, Hoffmann HH, et al. (2010) Human host factors required for influenza virus replication. Nature 463: 813-817.
-
(2010)
Nature
, vol.463
, pp. 813-817
-
-
Konig, R.1
Stertz, S.2
Zhou, Y.3
Inoue, A.4
Hoffmann, H.H.5
-
36
-
-
0038005018
-
DAVID: Database for Annotation, Visualization, and Integrated Discovery
-
Dennis G Jr, Sherman BT, Hosack DA, Yang J, Gao W, et al. (2003) DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 4: P3.
-
(2003)
Genome Biol
, vol.4
-
-
Dennis Jr., G.1
Sherman, B.T.2
Hosack, D.A.3
Yang, J.4
Gao, W.5
-
37
-
-
59249089462
-
Genomic analysis reveals a potential role for cell cycle perturbation in HCV-mediated apoptosis of cultured hepatocytes
-
Walters KA, Syder AJ, Lederer SL, Diamond DL, Paeper B, et al. (2009) Genomic analysis reveals a potential role for cell cycle perturbation in HCV-mediated apoptosis of cultured hepatocytes. PLoS Pathog 5: e1000269.
-
(2009)
PLoS Pathog
, vol.5
-
-
Walters, K.A.1
Syder, A.J.2
Lederer, S.L.3
Diamond, D.L.4
Paeper, B.5
-
38
-
-
70349513508
-
A genome-wide genetic screen for host factors required for hepatitis C virus propagation
-
Li Q, Brass AL, Ng A, Hu Z, Xavier RJ, et al. (2009) A genome-wide genetic screen for host factors required for hepatitis C virus propagation. Proc Natl Acad Sci U S A 106: 16410-16415.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 16410-16415
-
-
Li, Q.1
Brass, A.L.2
Ng, A.3
Hu, Z.4
Xavier, R.J.5
-
39
-
-
61849160363
-
A functional genomic screen identifies cellular cofactors of hepatitis C virus replication
-
Tai AW, Benita Y, Peng LF, Kim SS, Sakamoto N, et al. (2009) A functional genomic screen identifies cellular cofactors of hepatitis C virus replication. Cell Host Microbe 5: 298-307.
-
(2009)
Cell Host Microbe
, vol.5
, pp. 298-307
-
-
Tai, A.W.1
Benita, Y.2
Peng, L.F.3
Kim, S.S.4
Sakamoto, N.5
-
40
-
-
37049007864
-
Human apolipoprotein e is required for infectivity and production of hepatitis C virus in cell culture
-
Chang KS, Jiang J, Cai Z, Luo G, (2007) Human apolipoprotein e is required for infectivity and production of hepatitis C virus in cell culture. J Virol 81: 13783-13793.
-
(2007)
J Virol
, vol.81
, pp. 13783-13793
-
-
Chang, K.S.1
Jiang, J.2
Cai, Z.3
Luo, G.4
-
41
-
-
0345188811
-
Replication of subgenomic hepatitis C virus RNAs in a hepatoma cell line
-
Lohmann V, Korner F, Koch J, Herian U, Theilmann L, et al. (1999) Replication of subgenomic hepatitis C virus RNAs in a hepatoma cell line. Science 285: 110-113.
-
(1999)
Science
, vol.285
, pp. 110-113
-
-
Lohmann, V.1
Korner, F.2
Koch, J.3
Herian, U.4
Theilmann, L.5
-
42
-
-
79961155419
-
Generation of a cell culture-adapted hepatitis C virus with longer half life at physiological temperature
-
Kim CS, Keum SJ, Jang SK, (2011) Generation of a cell culture-adapted hepatitis C virus with longer half life at physiological temperature. PLoS ONE 6: e22808.
-
(2011)
PLoS ONE
, vol.6
-
-
Kim, C.S.1
Keum, S.J.2
Jang, S.K.3
-
43
-
-
57349133787
-
RNA-binding protein hnRNP D modulates internal ribosome entry site-dependent translation of hepatitis C virus RNA
-
Paek KY, Kim CS, Park SM, Kim JH, Jang SK, (2008) RNA-binding protein hnRNP D modulates internal ribosome entry site-dependent translation of hepatitis C virus RNA. J Virol 82: 12082-12093.
-
(2008)
J Virol
, vol.82
, pp. 12082-12093
-
-
Paek, K.Y.1
Kim, C.S.2
Park, S.M.3
Kim, J.H.4
Jang, S.K.5
-
44
-
-
24344449035
-
Role of the endocytic machinery in the sorting of lysosome-associated membrane proteins
-
Janvier K, Bonifacino JS, (2005) Role of the endocytic machinery in the sorting of lysosome-associated membrane proteins. Mol Biol Cell 16: 4231-4242.
-
(2005)
Mol Biol Cell
, vol.16
, pp. 4231-4242
-
-
Janvier, K.1
Bonifacino, J.S.2
-
45
-
-
44849100946
-
The CD81 partner EWI-2wint inhibits hepatitis C virus entry
-
Rocha-Perugini V, Montpellier C, Delgrange D, Wychowski C, Helle F, et al. (2008) The CD81 partner EWI-2wint inhibits hepatitis C virus entry. PLoS One 3: e1866.
-
(2008)
PLoS One
, vol.3
-
-
Rocha-Perugini, V.1
Montpellier, C.2
Delgrange, D.3
Wychowski, C.4
Helle, F.5
-
46
-
-
0036196266
-
Role of adaptor complex AP-3 in targeting wild-type and mutated CD63 to lysosomes
-
Rous BA, Reaves BJ, Ihrke G, Briggs JA, Gray SR, et al. (2002) Role of adaptor complex AP-3 in targeting wild-type and mutated CD63 to lysosomes. Mol Biol Cell 13: 1071-1082.
-
(2002)
Mol Biol Cell
, vol.13
, pp. 1071-1082
-
-
Rous, B.A.1
Reaves, B.J.2
Ihrke, G.3
Briggs, J.A.4
Gray, S.R.5
|