메뉴 건너뛰기




Volumn 8, Issue 4, 2013, Pages

Discovery of Cellular Proteins Required for the Early Steps of HCV Infection Using Integrative Genomics

Author keywords

[No Author keywords available]

Indexed keywords

CD63 ANTIGEN; CELL PROTEIN; SMALL INTERFERING RNA;

EID: 84876097960     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0060333     Document Type: Article
Times cited : (19)

References (46)
  • 1
    • 40349106161 scopus 로고    scopus 로고
    • The landscape of human proteins interacting with viruses and other pathogens
    • Dyer MD, Murali TM, Sobral BW, (2008) The landscape of human proteins interacting with viruses and other pathogens. PLoS Pathog 4: e32.
    • (2008) PLoS Pathog , vol.4
    • Dyer, M.D.1    Murali, T.M.2    Sobral, B.W.3
  • 2
    • 0035811625 scopus 로고    scopus 로고
    • Hepatitis C virus infection
    • Lauer GM, Walker BD, (2001) Hepatitis C virus infection. N Engl J Med 345: 41-52.
    • (2001) N Engl J Med , vol.345 , pp. 41-52
    • Lauer, G.M.1    Walker, B.D.2
  • 3
    • 68049123267 scopus 로고    scopus 로고
    • Virus-host interactions: from systems biology to translational research
    • Peng X, Chan EY, Li Y, Diamond DL, Korth MJ, et al. (2009) Virus-host interactions: from systems biology to translational research. Curr Opin Microbiol 12: 432-438.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 432-438
    • Peng, X.1    Chan, E.Y.2    Li, Y.3    Diamond, D.L.4    Korth, M.J.5
  • 4
    • 68049131345 scopus 로고    scopus 로고
    • Connecting viral with cellular interactomes
    • Bailer SM, Haas J, (2009) Connecting viral with cellular interactomes. Curr Opin Microbiol 12: 453-459.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 453-459
    • Bailer, S.M.1    Haas, J.2
  • 6
    • 67249143012 scopus 로고    scopus 로고
    • Host cell factors in HIV replication: meta-analysis of genome-wide studies
    • Bushman FD, Malani N, Fernandes J, D'Orso I, Cagney G, et al. (2009) Host cell factors in HIV replication: meta-analysis of genome-wide studies. PLoS Pathog 5: e1000437.
    • (2009) PLoS Pathog , vol.5
    • Bushman, F.D.1    Malani, N.2    Fernandes, J.3    D'Orso, I.4    Cagney, G.5
  • 7
    • 76349125292 scopus 로고    scopus 로고
    • Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana
    • Lee I, Ambaru B, Thakkar P, Marcotte EM, Rhee SY, (2010) Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana. Nat Biotechnol 28: 149-156.
    • (2010) Nat Biotechnol , vol.28 , pp. 149-156
    • Lee, I.1    Ambaru, B.2    Thakkar, P.3    Marcotte, E.M.4    Rhee, S.Y.5
  • 8
    • 35349024501 scopus 로고    scopus 로고
    • Network modeling links breast cancer susceptibility and centrosome dysfunction
    • Pujana MA, Han JD, Starita LM, Stevens KN, Tewari M, et al. (2007) Network modeling links breast cancer susceptibility and centrosome dysfunction. Nat Genet 39: 1338-1349.
    • (2007) Nat Genet , vol.39 , pp. 1338-1349
    • Pujana, M.A.1    Han, J.D.2    Starita, L.M.3    Stevens, K.N.4    Tewari, M.5
  • 10
    • 0033607281 scopus 로고    scopus 로고
    • Hepatitis C virus and other flaviviridae viruses enter cells via low density lipoprotein receptor
    • Agnello V, Abel G, Elfahal M, Knight GB, Zhang QX, (1999) Hepatitis C virus and other flaviviridae viruses enter cells via low density lipoprotein receptor. Proc Natl Acad Sci U S A 96: 12766-12771.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 12766-12771
    • Agnello, V.1    Abel, G.2    Elfahal, M.3    Knight, G.B.4    Zhang, Q.X.5
  • 11
    • 18644378971 scopus 로고    scopus 로고
    • The human scavenger receptor class B type I is a novel candidate receptor for the hepatitis C virus
    • Scarselli E, Ansuini H, Cerino R, Roccasecca RM, Acali S, et al. (2002) The human scavenger receptor class B type I is a novel candidate receptor for the hepatitis C virus. EMBO J 21: 5017-5025.
    • (2002) EMBO J , vol.21 , pp. 5017-5025
    • Scarselli, E.1    Ansuini, H.2    Cerino, R.3    Roccasecca, R.M.4    Acali, S.5
  • 12
    • 34147219730 scopus 로고    scopus 로고
    • Claudin-1 is a hepatitis C virus co-receptor required for a late step in entry
    • Evans MJ, von Hahn T, Tscherne DM, Syder AJ, Panis M, et al. (2007) Claudin-1 is a hepatitis C virus co-receptor required for a late step in entry. Nature 446: 801-805.
    • (2007) Nature , vol.446 , pp. 801-805
    • Evans, M.J.1    von Hahn, T.2    Tscherne, D.M.3    Syder, A.J.4    Panis, M.5
  • 13
    • 36048954580 scopus 로고    scopus 로고
    • Claudin-6 and claudin-9 function as additional coreceptors for hepatitis C virus
    • Zheng A, Yuan F, Li Y, Zhu F, Hou P, et al. (2007) Claudin-6 and claudin-9 function as additional coreceptors for hepatitis C virus. J Virol 81: 12465-12471.
    • (2007) J Virol , vol.81 , pp. 12465-12471
    • Zheng, A.1    Yuan, F.2    Li, Y.3    Zhu, F.4    Hou, P.5
  • 14
    • 60149090028 scopus 로고    scopus 로고
    • Human occludin is a hepatitis C virus entry factor required for infection of mouse cells
    • Ploss A, Evans MJ, Gaysinskaya VA, Panis M, You H, et al. (2009) Human occludin is a hepatitis C virus entry factor required for infection of mouse cells. Nature 457: 882-886.
    • (2009) Nature , vol.457 , pp. 882-886
    • Ploss, A.1    Evans, M.J.2    Gaysinskaya, V.A.3    Panis, M.4    You, H.5
  • 15
    • 50149090865 scopus 로고    scopus 로고
    • Protein kinase A-dependent step(s) in hepatitis C virus entry and infectivity
    • Farquhar MJ, Harris HJ, Diskar M, Jones S, Mee CJ, et al. (2008) Protein kinase A-dependent step(s) in hepatitis C virus entry and infectivity. J Virol 82: 8797-8811.
    • (2008) J Virol , vol.82 , pp. 8797-8811
    • Farquhar, M.J.1    Harris, H.J.2    Diskar, M.3    Jones, S.4    Mee, C.J.5
  • 16
    • 50149109390 scopus 로고    scopus 로고
    • CD81 is a central regulator of cellular events required for hepatitis C virus infection of human hepatocytes
    • Brazzoli M, Bianchi A, Filippini S, Weiner A, Zhu Q, et al. (2008) CD81 is a central regulator of cellular events required for hepatitis C virus infection of human hepatocytes. J Virol 82: 8316-8329.
    • (2008) J Virol , vol.82 , pp. 8316-8329
    • Brazzoli, M.1    Bianchi, A.2    Filippini, S.3    Weiner, A.4    Zhu, Q.5
  • 17
    • 33745771735 scopus 로고    scopus 로고
    • Hepatitis C virus entry depends on clathrin-mediated endocytosis
    • Blanchard E, Belouzard S, Goueslain L, Wakita T, Dubuisson J, et al. (2006) Hepatitis C virus entry depends on clathrin-mediated endocytosis. J Virol 80: 6964-6972.
    • (2006) J Virol , vol.80 , pp. 6964-6972
    • Blanchard, E.1    Belouzard, S.2    Goueslain, L.3    Wakita, T.4    Dubuisson, J.5
  • 18
    • 3042514191 scopus 로고    scopus 로고
    • Coexpression analysis of human genes across many microarray data sets
    • Lee HK, Hsu AK, Sajdak J, Qin J, Pavlidis P, (2004) Coexpression analysis of human genes across many microarray data sets. Genome Res 14: 1085-1094.
    • (2004) Genome Res , vol.14 , pp. 1085-1094
    • Lee, H.K.1    Hsu, A.K.2    Sajdak, J.3    Qin, J.4    Pavlidis, P.5
  • 20
    • 44249113841 scopus 로고    scopus 로고
    • Design logic of a cannabinoid receptor signaling network that triggers neurite outgrowth
    • Bromberg KD, Ma'ayan A, Neves SR, Iyengar R, (2008) Design logic of a cannabinoid receptor signaling network that triggers neurite outgrowth. Science 320: 903-909.
    • (2008) Science , vol.320 , pp. 903-909
    • Bromberg, K.D.1    Ma'ayan, A.2    Neves, S.R.3    Iyengar, R.4
  • 23
    • 34547788145 scopus 로고    scopus 로고
    • Monitoring the antiviral effect of alpha interferon on individual cells
    • Kim CS, Jung JH, Wakita T, Yoon SK, Jang SK, (2007) Monitoring the antiviral effect of alpha interferon on individual cells. J Virol 81: 8814-8820.
    • (2007) J Virol , vol.81 , pp. 8814-8820
    • Kim, C.S.1    Jung, J.H.2    Wakita, T.3    Yoon, S.K.4    Jang, S.K.5
  • 24
    • 78951472169 scopus 로고    scopus 로고
    • Biochemical and morphological properties of hepatitis C virus particles and determination of their lipidome
    • Merz A, Long G, Hiet MS, Brugger B, Chlanda P, et al. (2011) Biochemical and morphological properties of hepatitis C virus particles and determination of their lipidome. J Biol Chem 286: 3018-3032.
    • (2011) J Biol Chem , vol.286 , pp. 3018-3032
    • Merz, A.1    Long, G.2    Hiet, M.S.3    Brugger, B.4    Chlanda, P.5
  • 26
    • 0038471344 scopus 로고    scopus 로고
    • Hepatitis C virus glycoproteins mediate pH-dependent cell entry of pseudotyped retroviral particles
    • Hsu M, Zhang J, Flint M, Logvinoff C, Cheng-Mayer C, et al. (2003) Hepatitis C virus glycoproteins mediate pH-dependent cell entry of pseudotyped retroviral particles. Proc Natl Acad Sci U S A 100: 7271-7276.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 7271-7276
    • Hsu, M.1    Zhang, J.2    Flint, M.3    Logvinoff, C.4    Cheng-Mayer, C.5
  • 29
    • 43249098191 scopus 로고    scopus 로고
    • Correlation of the tight junction-like distribution of Claudin-1 to the cellular tropism of hepatitis C virus
    • Yang W, Qiu C, Biswas N, Jin J, Watkins SC, et al. (2008) Correlation of the tight junction-like distribution of Claudin-1 to the cellular tropism of hepatitis C virus. J Biol Chem 283: 8643-8653.
    • (2008) J Biol Chem , vol.283 , pp. 8643-8653
    • Yang, W.1    Qiu, C.2    Biswas, N.3    Jin, J.4    Watkins, S.C.5
  • 30
    • 59649117842 scopus 로고    scopus 로고
    • Tight junction proteins claudin-1 and occludin control hepatitis C virus entry and are downregulated during infection to prevent superinfection
    • Liu S, Yang W, Shen L, Turner JR, Coyne CB, et al. (2009) Tight junction proteins claudin-1 and occludin control hepatitis C virus entry and are downregulated during infection to prevent superinfection. J Virol 83: 2011-2014.
    • (2009) J Virol , vol.83 , pp. 2011-2014
    • Liu, S.1    Yang, W.2    Shen, L.3    Turner, J.R.4    Coyne, C.B.5
  • 31
    • 0036899363 scopus 로고    scopus 로고
    • The third dimension for protein interactions and complexes
    • Aloy P, Russell RB, (2002) The third dimension for protein interactions and complexes. Trends Biochem Sci 27: 633-638.
    • (2002) Trends Biochem Sci , vol.27 , pp. 633-638
    • Aloy, P.1    Russell, R.B.2
  • 33
    • 67849130819 scopus 로고    scopus 로고
    • A computational screen for regulators of oxidative phosphorylation implicates SLIRP in mitochondrial RNA homeostasis
    • Baughman JM, Nilsson R, Gohil VM, Arlow DH, Gauhar Z, et al. (2009) A computational screen for regulators of oxidative phosphorylation implicates SLIRP in mitochondrial RNA homeostasis. PLoS Genet 5: e1000590.
    • (2009) PLoS Genet , vol.5
    • Baughman, J.M.1    Nilsson, R.2    Gohil, V.M.3    Arlow, D.H.4    Gauhar, Z.5
  • 34
    • 35948987161 scopus 로고    scopus 로고
    • Integrative microarray analysis of pathways dysregulated in metastatic prostate cancer
    • Setlur SR, Royce TE, Sboner A, Mosquera JM, Demichelis F, et al. (2007) Integrative microarray analysis of pathways dysregulated in metastatic prostate cancer. Cancer Res 67: 10296-10303.
    • (2007) Cancer Res , vol.67 , pp. 10296-10303
    • Setlur, S.R.1    Royce, T.E.2    Sboner, A.3    Mosquera, J.M.4    Demichelis, F.5
  • 35
    • 76749108989 scopus 로고    scopus 로고
    • Human host factors required for influenza virus replication
    • Konig R, Stertz S, Zhou Y, Inoue A, Hoffmann HH, et al. (2010) Human host factors required for influenza virus replication. Nature 463: 813-817.
    • (2010) Nature , vol.463 , pp. 813-817
    • Konig, R.1    Stertz, S.2    Zhou, Y.3    Inoue, A.4    Hoffmann, H.H.5
  • 36
  • 37
    • 59249089462 scopus 로고    scopus 로고
    • Genomic analysis reveals a potential role for cell cycle perturbation in HCV-mediated apoptosis of cultured hepatocytes
    • Walters KA, Syder AJ, Lederer SL, Diamond DL, Paeper B, et al. (2009) Genomic analysis reveals a potential role for cell cycle perturbation in HCV-mediated apoptosis of cultured hepatocytes. PLoS Pathog 5: e1000269.
    • (2009) PLoS Pathog , vol.5
    • Walters, K.A.1    Syder, A.J.2    Lederer, S.L.3    Diamond, D.L.4    Paeper, B.5
  • 38
    • 70349513508 scopus 로고    scopus 로고
    • A genome-wide genetic screen for host factors required for hepatitis C virus propagation
    • Li Q, Brass AL, Ng A, Hu Z, Xavier RJ, et al. (2009) A genome-wide genetic screen for host factors required for hepatitis C virus propagation. Proc Natl Acad Sci U S A 106: 16410-16415.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 16410-16415
    • Li, Q.1    Brass, A.L.2    Ng, A.3    Hu, Z.4    Xavier, R.J.5
  • 39
    • 61849160363 scopus 로고    scopus 로고
    • A functional genomic screen identifies cellular cofactors of hepatitis C virus replication
    • Tai AW, Benita Y, Peng LF, Kim SS, Sakamoto N, et al. (2009) A functional genomic screen identifies cellular cofactors of hepatitis C virus replication. Cell Host Microbe 5: 298-307.
    • (2009) Cell Host Microbe , vol.5 , pp. 298-307
    • Tai, A.W.1    Benita, Y.2    Peng, L.F.3    Kim, S.S.4    Sakamoto, N.5
  • 40
    • 37049007864 scopus 로고    scopus 로고
    • Human apolipoprotein e is required for infectivity and production of hepatitis C virus in cell culture
    • Chang KS, Jiang J, Cai Z, Luo G, (2007) Human apolipoprotein e is required for infectivity and production of hepatitis C virus in cell culture. J Virol 81: 13783-13793.
    • (2007) J Virol , vol.81 , pp. 13783-13793
    • Chang, K.S.1    Jiang, J.2    Cai, Z.3    Luo, G.4
  • 41
    • 0345188811 scopus 로고    scopus 로고
    • Replication of subgenomic hepatitis C virus RNAs in a hepatoma cell line
    • Lohmann V, Korner F, Koch J, Herian U, Theilmann L, et al. (1999) Replication of subgenomic hepatitis C virus RNAs in a hepatoma cell line. Science 285: 110-113.
    • (1999) Science , vol.285 , pp. 110-113
    • Lohmann, V.1    Korner, F.2    Koch, J.3    Herian, U.4    Theilmann, L.5
  • 42
    • 79961155419 scopus 로고    scopus 로고
    • Generation of a cell culture-adapted hepatitis C virus with longer half life at physiological temperature
    • Kim CS, Keum SJ, Jang SK, (2011) Generation of a cell culture-adapted hepatitis C virus with longer half life at physiological temperature. PLoS ONE 6: e22808.
    • (2011) PLoS ONE , vol.6
    • Kim, C.S.1    Keum, S.J.2    Jang, S.K.3
  • 43
    • 57349133787 scopus 로고    scopus 로고
    • RNA-binding protein hnRNP D modulates internal ribosome entry site-dependent translation of hepatitis C virus RNA
    • Paek KY, Kim CS, Park SM, Kim JH, Jang SK, (2008) RNA-binding protein hnRNP D modulates internal ribosome entry site-dependent translation of hepatitis C virus RNA. J Virol 82: 12082-12093.
    • (2008) J Virol , vol.82 , pp. 12082-12093
    • Paek, K.Y.1    Kim, C.S.2    Park, S.M.3    Kim, J.H.4    Jang, S.K.5
  • 44
    • 24344449035 scopus 로고    scopus 로고
    • Role of the endocytic machinery in the sorting of lysosome-associated membrane proteins
    • Janvier K, Bonifacino JS, (2005) Role of the endocytic machinery in the sorting of lysosome-associated membrane proteins. Mol Biol Cell 16: 4231-4242.
    • (2005) Mol Biol Cell , vol.16 , pp. 4231-4242
    • Janvier, K.1    Bonifacino, J.S.2
  • 46
    • 0036196266 scopus 로고    scopus 로고
    • Role of adaptor complex AP-3 in targeting wild-type and mutated CD63 to lysosomes
    • Rous BA, Reaves BJ, Ihrke G, Briggs JA, Gray SR, et al. (2002) Role of adaptor complex AP-3 in targeting wild-type and mutated CD63 to lysosomes. Mol Biol Cell 13: 1071-1082.
    • (2002) Mol Biol Cell , vol.13 , pp. 1071-1082
    • Rous, B.A.1    Reaves, B.J.2    Ihrke, G.3    Briggs, J.A.4    Gray, S.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.