-
1
-
-
0001353186
-
An evaluation of a possible phylogenetic relationship between the Euglenophyta and Kinetoplastida
-
Kivic PA, Walne PL, (1984) An evaluation of a possible phylogenetic relationship between the Euglenophyta and Kinetoplastida. Origins of Life and Evolution of Biospheres 13: 269-288.
-
(1984)
Origins of Life and Evolution of Biospheres
, vol.13
, pp. 269-288
-
-
Kivic, P.A.1
Walne, P.L.2
-
2
-
-
0034850619
-
Biomass production in mixotrophic culture of Euglena gracilis under acidic condition and its growth energetics
-
Yamane Y-I, Utsunomiya T, Watanabe M, Sasaki K, (2001) Biomass production in mixotrophic culture of Euglena gracilis under acidic condition and its growth energetics. Biotechnol Lett 23: 1223-1228.
-
(2001)
Biotechnol Lett
, vol.23
, pp. 1223-1228
-
-
Yamane, Y.-I.1
Utsunomiya, T.2
Watanabe, M.3
Sasaki, K.4
-
3
-
-
0031030992
-
Production of antioxidant vitamins, β-carotene, vitamin C, and vitamin E, by two-step culture of Euglena gracilis Z
-
Takeyama H, Kanamaru A, Yoshino Y, Kakuta H, Kawamura Y, et al. (1997) Production of antioxidant vitamins, β-carotene, vitamin C, and vitamin E, by two-step culture of Euglena gracilis Z. Biotechnol Bioeng. 53: 185-190.
-
(1997)
Biotechnol Bioeng
, vol.53
, pp. 185-190
-
-
Takeyama, H.1
Kanamaru, A.2
Yoshino, Y.3
Kakuta, H.4
Kawamura, Y.5
-
4
-
-
0036742076
-
Effects of nutrient-limitation and irradiance on marine phytoplankton pigments
-
Henriksen P, Riemann B, Kaas H, Sørensen HM, Sørensen HL, (2002) Effects of nutrient-limitation and irradiance on marine phytoplankton pigments. J Plankton Res 24: 835-858.
-
(2002)
J Plankton Res
, vol.24
, pp. 835-858
-
-
Henriksen, P.1
Riemann, B.2
Kaas, H.3
Sørensen, H.M.4
Sørensen, H.L.5
-
5
-
-
34447644936
-
Species of the genus Eutreptiella (Euglenophyceae) from Russian waters of East/Japan Sea
-
Stonik I, (2007) Species of the genus Eutreptiella (Euglenophyceae) from Russian waters of East/Japan Sea. Ocean Science Journal 42: 81-88.
-
(2007)
Ocean Science Journal
, vol.42
, pp. 81-88
-
-
Stonik, I.1
-
6
-
-
31144468797
-
Variations of phytoplankton community structure related to water quality trends in a tropical karstic coastal zone
-
Álvarez-Góngora C, Herrera-Silveira JA, (2006) Variations of phytoplankton community structure related to water quality trends in a tropical karstic coastal zone. Mar Pollut Bull 52: 48-60.
-
(2006)
Mar Pollut Bull
, vol.52
, pp. 48-60
-
-
Álvarez-Góngora, C.1
Herrera-Silveira, J.A.2
-
7
-
-
84876056026
-
Nutrients and phytoplankton in Prince Edward Island Inlets during late summer to fall: 2001-2003
-
Tech. Rept.2668
-
Bates SS, Strain PM (2006) Nutrients and phytoplankton in Prince Edward Island Inlets during late summer to fall: 2001-2003. Canadian Technical Reports of Fisheries and Aquatic Sciences, Tech. Rept.2668: xii +136p.
-
(2006)
Canadian Technical Reports of Fisheries and Aquatic Sciences
-
-
Bates, S.S.1
Strain, P.M.2
-
8
-
-
0029664133
-
Development and fate of Eutreptiella gymnastica bloom in nutrient-enriched enclosures in the coastal Baltic Sea
-
Olli K, Heiskanen A-S, Seppälä J, (1996) Development and fate of Eutreptiella gymnastica bloom in nutrient-enriched enclosures in the coastal Baltic Sea. J Plankton Res 18: 1587-1604.
-
(1996)
J Plankton Res
, vol.18
, pp. 1587-1604
-
-
Olli, K.1
Heiskanen, A.-S.2
Seppälä, J.3
-
9
-
-
47949121227
-
Food web of a SW Atlantic shallow coastal lagoon: spatial environmental variability does not impose substantial changes in the trophic structure
-
Rodríguez-Graña, Calliari D, Conde D, Sellanes J, Urrutia R, (2008) Food web of a SW Atlantic shallow coastal lagoon: spatial environmental variability does not impose substantial changes in the trophic structure. Mar Ecol Prog Ser 362: 69-83.
-
(2008)
Mar Ecol Prog Ser
, vol.362
, pp. 69-83
-
-
Rodríguez-Graña, C.D.1
Conde, D.2
Sellanes, J.3
Urrutia, R.4
-
10
-
-
33750215771
-
Bacterivory by co-occurring red-tide algae, heterotrophic nanoflagellates, and ciliates
-
Seong KA, Jeong HJ, Kim S, Kim GH, Kang JH, (2006) Bacterivory by co-occurring red-tide algae, heterotrophic nanoflagellates, and ciliates. Mar Ecol Prog Ser 322: 85-97.
-
(2006)
Mar Ecol Prog Ser
, vol.322
, pp. 85-97
-
-
Seong, K.A.1
Jeong, H.J.2
Kim, S.3
Kim, G.H.4
Kang, J.H.5
-
11
-
-
84876031195
-
-
In: Lassus P, Arzul G, Denn EE-L, Gentien P, Baut CM-L, editors; Nantes, France
-
Lindholm T (1995) Green water caused by Eutreptiella gymnastica (Euglenophyceae) in a stratified Baltic Sea inlet. In: Lassus P, Arzul G, Denn EE-L, Gentien P, Baut CM-L, editors; Nantes, France. 181-186.
-
(1995)
Green water caused by Eutreptiella gymnastica (Euglenophyceae) in a stratified Baltic Sea inlet
, pp. 181-186
-
-
Lindholm, T.1
-
12
-
-
0041332948
-
Species composition and seasonal dynamics of density and biomass of euglenoids in Peter the Great Bay, Sea of Japan
-
Stonik IV, Selina MS, (2001) Species composition and seasonal dynamics of density and biomass of euglenoids in Peter the Great Bay, Sea of Japan. Russ J Mar Biol 27: 174-176.
-
(2001)
Russ J Mar Biol
, vol.27
, pp. 174-176
-
-
Stonik, I.V.1
Selina, M.S.2
-
13
-
-
67749137360
-
Dinoflagellate spliced leader RNA genes display a variety of sequences and genomic arrangements
-
Zhang H, Campbell DA, Sturm NR, Lin S, (2009) Dinoflagellate spliced leader RNA genes display a variety of sequences and genomic arrangements. Mol Biol Evol 26: 1757-1771.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 1757-1771
-
-
Zhang, H.1
Campbell, D.A.2
Sturm, N.R.3
Lin, S.4
-
14
-
-
84862832358
-
Dinoflagellate meta-transcriptomics enabled by spliced leader
-
In: Ho CK, editor, Hong Kong
-
Lin S, Zhang H (2010) Dinoflagellate meta-transcriptomics enabled by spliced leader. In: Ho CK, editor. 13th International Conference on Harmful Algae. Hong Kong. 166-170.
-
(2010)
13th International Conference on Harmful Algae
, pp. 66-170
-
-
Lin, S.1
Zhang, H.2
-
15
-
-
78650582054
-
Spliced leader-based metatranscriptomic analyses lead to recognition of hidden genomic features in dinoflagellates
-
Lin S, Zhang H, Zhuang Y, Tran B, Gill J, (2010) Spliced leader-based metatranscriptomic analyses lead to recognition of hidden genomic features in dinoflagellates. PNAS 107: 20033-20038.
-
(2010)
PNAS
, vol.107
, pp. 20033-20038
-
-
Lin, S.1
Zhang, H.2
Zhuang, Y.3
Tran, B.4
Gill, J.5
-
16
-
-
0022507399
-
The 35-nucleotide spliced leader sequence is common to all trypanosome messenger RNA's
-
Walder J, Eder P, Engman D, Brentano S, Walder R, et al. (1986) The 35-nucleotide spliced leader sequence is common to all trypanosome messenger RNA's. Science 233: 569-571.
-
(1986)
Science
, vol.233
, pp. 569-571
-
-
Walder, J.1
Eder, P.2
Engman, D.3
Brentano, S.4
Walder, R.5
-
17
-
-
0034081951
-
Characterization of trans-splicing in Euglenoids
-
Frantz C, Ebel C, Paulus F, Imbault P, (2000) Characterization of trans-splicing in Euglenoids. Curr Genet 37: 349-355.
-
(2000)
Curr Genet
, vol.37
, pp. 349-355
-
-
Frantz, C.1
Ebel, C.2
Paulus, F.3
Imbault, P.4
-
18
-
-
84872277244
-
Ectobiotic and endobiotic bacteira associated with Eutreptiella sp. isolated from Long Island Sound
-
Kuo RC, Lin S, (2013) Ectobiotic and endobiotic bacteira associated with Eutreptiella sp. isolated from Long Island Sound. Protist 164: 60-74.
-
(2013)
Protist
, vol.164
, pp. 60-74
-
-
Kuo, R.C.1
Lin, S.2
-
19
-
-
84893778543
-
-
New York, USA
-
Li Y, Olsen CB, Lyman MJ, Heukelem LV, Wikfors G, et al.(2004) Monitoring phytoplankton in Long Island Sound with HPLC photopigment profiles. New York, USA. 45-54.
-
(2004)
Monitoring phytoplankton in Long Island Sound with HPLC photopigment profiles
, pp. 45-54
-
-
Li, Y.1
Olsen, C.B.2
Lyman, M.J.3
Heukelem, L.V.4
Wikfors, G.5
-
20
-
-
20344396449
-
Phytoplankton floristics of a Long Island Embayment
-
Cassin JM, (1978) Phytoplankton floristics of a Long Island Embayment. Bulletin of the Torrey Botanical Club 105: 205-213.
-
(1978)
Bulletin of the Torrey Botanical Club
, vol.105
, pp. 205-213
-
-
Cassin, J.M.1
-
22
-
-
35748983183
-
A three-gene dinoflagellate phylogeny suggests monophyly of prorocentrales and a basal position for Amphidinium and Heterocapsa
-
Zhang H, Bhattacharya D, Lin S, (2007) A three-gene dinoflagellate phylogeny suggests monophyly of prorocentrales and a basal position for Amphidinium and Heterocapsa. J Mol Evol 65: 463-474.
-
(2007)
J Mol Evol
, vol.65
, pp. 463-474
-
-
Zhang, H.1
Bhattacharya, D.2
Lin, S.3
-
23
-
-
34248387738
-
Spliced leader RNA trans-splicing in dinoflagellates
-
Zhang H, Hou Y, Miranda L, Campbell DA, Sturm NR, et al. (2007) Spliced leader RNA trans-splicing in dinoflagellates. PNAS 104: 4618-4623.
-
(2007)
PNAS
, vol.104
, pp. 4618-4623
-
-
Zhang, H.1
Hou, Y.2
Miranda, L.3
Campbell, D.A.4
Sturm, N.R.5
-
24
-
-
33745134371
-
Amplification of low quantity bacterial RNA for microarray studies: time-course analysis of Leptospirillum ferrooxidans under nitrogen-fixing conditions†
-
Moreno-Paz M, Parro V, (2006) Amplification of low quantity bacterial RNA for microarray studies: time-course analysis of Leptospirillum ferrooxidans under nitrogen-fixing conditions†. Environ Microbiol 8: 1064-1073.
-
(2006)
Environ Microbiol
, vol.8
, pp. 1064-1073
-
-
Moreno-Paz, M.1
Parro, V.2
-
25
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC, (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
26
-
-
79952390994
-
Fast identification and removal of sequence contamination from genomic and metagenomic datasets
-
Schmieder R, Edwards R, (2011) Fast identification and removal of sequence contamination from genomic and metagenomic datasets. PLoS ONE 6: e17288.
-
(2011)
PLoS ONE
, vol.6
-
-
Schmieder, R.1
Edwards, R.2
-
27
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
28
-
-
45549089420
-
High-throughput functional annotation and data mining with the Blast2GO suite
-
Götz S, García-Gómez JM, Terol J, Williams TD, Nagaraj SH, et al. (2008) High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res 36: 3420-3435.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 3420-3435
-
-
Götz, S.1
García-Gómez, J.M.2
Terol, J.3
Williams, T.D.4
Nagaraj, S.H.5
-
29
-
-
77955801615
-
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Team TG
-
Goecks J, Nekrutenko A, Taylor J, (2010) Team TG (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 11: R86.
-
(2010)
Genome Biol
, vol.11
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
30
-
-
75949108066
-
Galaxy: a web-based genome analysis tool for experimentalists
-
Unit 19.10.11-21
-
Blankenberg D, Kuster GV, Coraor N, Ananda G, Lazarus R, et al. (2010) Galaxy: a web-based genome analysis tool for experimentalists. Current Protocals in Molecular Biology Unit 19.10.11-21.
-
(2010)
Current Protocals in Molecular Biology
-
-
Blankenberg, D.1
Kuster, G.V.2
Coraor, N.3
Ananda, G.4
Lazarus, R.5
-
31
-
-
25844449770
-
Galaxy: a platform for interactive larg-scale genome analysis
-
Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, et al. (2005) Galaxy: a platform for interactive larg-scale genome analysis. Genome Res 15: 1451-1455.
-
(2005)
Genome Res
, vol.15
, pp. 1451-1455
-
-
Giardine, B.1
Riemer, C.2
Hardison, R.C.3
Burhans, R.4
Elnitski, L.5
-
32
-
-
0034870192
-
Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness
-
Gotelli NJ, Colwell RK, (2001) Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness. Ecol Lett 4: 379-391.
-
(2001)
Ecol Lett
, vol.4
, pp. 379-391
-
-
Gotelli, N.J.1
Colwell, R.K.2
-
33
-
-
20244376755
-
Comparative metagenomics of microbial communities
-
Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, et al. (2005) Comparative metagenomics of microbial communities. Science 308: 554-557.
-
(2005)
Science
, vol.308
, pp. 554-557
-
-
Tringe, S.G.1
von Mering, C.2
Kobayashi, A.3
Salamov, A.A.4
Chen, K.5
-
34
-
-
44849114763
-
The airborne metagenome in an indoor urban environment
-
doi:10.1371/journal.pone.0001862
-
Tringe SG, Zhang T, Liu X, Yu Y, Lee WH, et al. (2008) The airborne metagenome in an indoor urban environment. PLoS ONE 3(4): e1862 doi:10.1371/journal.pone.0001862.
-
(2008)
PLoS ONE
, vol.3
, Issue.4
-
-
Tringe, S.G.1
Zhang, T.2
Liu, X.3
Yu, Y.4
Lee, W.H.5
-
35
-
-
66349087005
-
Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery
-
Hale M, McCormick C, Jackson J, DeWoody JA, (2009) Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery. BMC Genomics 10: 203.
-
(2009)
BMC Genomics
, vol.10
, pp. 203
-
-
Hale, M.1
McCormick, C.2
Jackson, J.3
DeWoody, J.A.4
-
36
-
-
84880321899
-
Second-generation environmental sequencing unmasks marine metazoan biodiversity
-
doi:10.1038/ncomms1095
-
Fonseca VG, Carvalho GR, Sung W, Johnson HF, et al. (2010) Second-generation environmental sequencing unmasks marine metazoan biodiversity. Nature Communications 1: 98 doi:10.1038/ncomms1095.
-
(2010)
Nature Communications
, vol.1
, pp. 98
-
-
Fonseca, V.G.1
Carvalho, G.R.2
Sung, W.3
Johnson, H.F.4
-
37
-
-
79955554975
-
Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes
-
Warren RL, Freeman JD, Zeng T, Choe G, Munro S, et al. (2011) Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes. Genome Res 21: 790-797.
-
(2011)
Genome Res
, vol.21
, pp. 790-797
-
-
Warren, R.L.1
Freeman, J.D.2
Zeng, T.3
Choe, G.4
Munro, S.5
-
38
-
-
65649092976
-
Biopython: freely available Python tools for computational molecular biology and bioinformatics
-
Cock PJA, Antao T, Chang JT, Chapman BA, Cox CJ, et al. (2009) Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25: 1422-1423.
-
(2009)
Bioinformatics
, vol.25
, pp. 1422-1423
-
-
Cock, P.J.A.1
Antao, T.2
Chang, J.T.3
Chapman, B.A.4
Cox, C.J.5
-
39
-
-
0022552131
-
Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes
-
Kozak M, (1986) Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. Cell 44: 283.
-
(1986)
Cell
, vol.44
, pp. 283
-
-
Kozak, M.1
-
40
-
-
1642579695
-
β+45 G→ C: a novel silent β-thalassaemia mutation, the first in the Kozak sequence
-
De Angioletti M, Lacerra G, Sabato V, Carestia C, (2004) β+45 G→ C: a novel silent β-thalassaemia mutation, the first in the Kozak sequence. Br J Haematol 124: 224-231.
-
(2004)
Br J Haematol
, vol.124
, pp. 224-231
-
-
De Angioletti, M.1
Lacerra, G.2
Sabato, V.3
Carestia, C.4
-
41
-
-
0025804898
-
The sequence flanking translational initiation site in protozoa
-
Yamauchi K, (1991) The sequence flanking translational initiation site in protozoa. Nucleic Acids Res. 19: 2715-2720.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 2715-2720
-
-
Yamauchi, K.1
-
42
-
-
0002925272
-
Selection of AUG initiation codons differs in plants and animals
-
Lütcke H, Chow K, Mickel F, Moss K, Kern H, et al. (1987) Selection of AUG initiation codons differs in plants and animals. The EMBO journal 6: 43.
-
(1987)
The EMBO Journal
, vol.6
, pp. 43
-
-
Lütcke, H.1
Chow, K.2
Mickel, F.3
Moss, K.4
Kern, H.5
-
43
-
-
0010043716
-
Evolution of carboxylating enzymes involved in paramylon synthesis (phosphoenolpyruvate carboxylase and carboxykinase) in heterotrophically grown Euglena gracilis
-
Briand J, Calvayrac R, Laval-Martin D, Farineau J, (1981) Evolution of carboxylating enzymes involved in paramylon synthesis (phosphoenolpyruvate carboxylase and carboxykinase) in heterotrophically grown Euglena gracilis. Planta 151: 168-175.
-
(1981)
Planta
, vol.151
, pp. 168-175
-
-
Briand, J.1
Calvayrac, R.2
Laval-Martin, D.3
Farineau, J.4
-
44
-
-
0742285067
-
Marine planktonic ciliates that prey on macroalgae and enslave their chloroplasts
-
McManus GB, Zhang H, Lin S, (2004) Marine planktonic ciliates that prey on macroalgae and enslave their chloroplasts. Limnol Oceanogr 49: 308-313.
-
(2004)
Limnol Oceanogr
, vol.49
, pp. 308-313
-
-
McManus, G.B.1
Zhang, H.2
Lin, S.3
-
45
-
-
84858650035
-
The plastid genome of Eutreptiella provides a window into the process of secondary endosymbiosis of plastid in euglenids
-
Hrdá Š, Fousek J, Szabová J, Hampl VV, Vlček Č, (2012) The plastid genome of Eutreptiella provides a window into the process of secondary endosymbiosis of plastid in euglenids. PLoS ONE 7: e33746.
-
(2012)
PLoS ONE
, vol.7
-
-
Hrdá, Š.1
Fousek, J.2
Szabová, J.3
Hampl, V.V.4
Vlček, Č.5
-
46
-
-
67650297002
-
Cascades of convergent evolution: The corresponding evolutionary histories of euglenozoans and dinoflagellates
-
Lukeš J, Leander BS, Keeling PJ, (2009) Cascades of convergent evolution: The corresponding evolutionary histories of euglenozoans and dinoflagellates. Proceedings of the National Academy of Sciences 106: 9963-9970.
-
(2009)
Proceedings of the National Academy of Sciences
, vol.106
, pp. 9963-9970
-
-
Lukeš, J.1
Leander, B.S.2
Keeling, P.J.3
-
47
-
-
34347339518
-
Comparative genomic analysis of three Leishmania species that cause diverse human disease
-
Peacock CS, Seeger K, Harris D, Murphy L, Ruiz JC, et al. (2007) Comparative genomic analysis of three Leishmania species that cause diverse human disease. Nat Genet 39: 839-847.
-
(2007)
Nat Genet
, vol.39
, pp. 839-847
-
-
Peacock, C.S.1
Seeger, K.2
Harris, D.3
Murphy, L.4
Ruiz, J.C.5
-
48
-
-
22244437571
-
The Genome of the Kinetoplastid Parasite, Leishmania major
-
Ivens AC, Peacock CS, Worthey EA, Murphy L, Aggarwal G, et al. (2005) The Genome of the Kinetoplastid Parasite, Leishmania major. Science 309: 436-442.
-
(2005)
Science
, vol.309
, pp. 436-442
-
-
Ivens, A.C.1
Peacock, C.S.2
Worthey, E.A.3
Murphy, L.4
Aggarwal, G.5
-
49
-
-
22244441812
-
The Genome of the African Trypanosome Trypanosoma brucei
-
Berriman M, Ghedin E, Hertz-Fowler C, Blandin G, Renauld H, et al. (2005) The Genome of the African Trypanosome Trypanosoma brucei. Science 309: 416-422.
-
(2005)
Science
, vol.309
, pp. 416-422
-
-
Berriman, M.1
Ghedin, E.2
Hertz-Fowler, C.3
Blandin, G.4
Renauld, H.5
-
50
-
-
70349202709
-
Distinct gene number-genome size relationships for eukaryotes and non-eukaryotes: gene content estimation for dinoflagellate genomes
-
Hou Y, Lin S, (2009) Distinct gene number-genome size relationships for eukaryotes and non-eukaryotes: gene content estimation for dinoflagellate genomes. PLoS ONE 4: e6978.
-
(2009)
PLoS ONE
, vol.4
-
-
Hou, Y.1
Lin, S.2
-
51
-
-
79952501970
-
Transcriptome sequencing and annotation of the microalgae Dunaliella tertiolecta: Pathway description and gene discovery for production of next-generation biofuels
-
Rismani-Yazdi H, Haznedaroglu B, Bibby K, Peccia J, (2011) Transcriptome sequencing and annotation of the microalgae Dunaliella tertiolecta: Pathway description and gene discovery for production of next-generation biofuels. BMC Genomics 12: 148.
-
(2011)
BMC Genomics
, vol.12
, pp. 148
-
-
Rismani-Yazdi, H.1
Haznedaroglu, B.2
Bibby, K.3
Peccia, J.4
-
52
-
-
33645069944
-
Transcriptome analysis of a cnidarian-dinoflagellate mutualism reveals complex modulation of host gene expression
-
Rodriguez-Lanetty M, Phillips WS, Weis VM, (2006) Transcriptome analysis of a cnidarian-dinoflagellate mutualism reveals complex modulation of host gene expression. BMC Genomics 7: 23.
-
(2006)
BMC Genomics
, vol.7
, pp. 23
-
-
Rodriguez-Lanetty, M.1
Phillips, W.S.2
Weis, V.M.3
-
53
-
-
78651326786
-
FragGeneScan: predicting genes in short and error-prone reads
-
Rho M, Tang H, Ye Y, (2010) FragGeneScan: predicting genes in short and error-prone reads. Nucleic Acids Res 38: e191.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Rho, M.1
Tang, H.2
Ye, Y.3
-
54
-
-
0031743421
-
Profile hidden Markov models
-
Eddy SR, (1998) Profile hidden Markov models. Bioinformatics 14: 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
55
-
-
9144257886
-
The Pfam protein families database
-
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, et al. (2004) The Pfam protein families database. Nucleic Acids Res 32: D138-D141.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
-
56
-
-
0035175673
-
TIGRFAMs: a protein family resource for the functional identification of proteins
-
Haft DH, Loftus BJ, Richardson DL, Yang F, Eisen JA, et al. (2001) TIGRFAMs: a protein family resource for the functional identification of proteins. Nucleic Acids Res 29: 41-43.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 41-43
-
-
Haft, D.H.1
Loftus, B.J.2
Richardson, D.L.3
Yang, F.4
Eisen, J.A.5
-
57
-
-
0036797563
-
Control of eukaryotic protein synthesis by upstream open reading frames in the 5′-untranslated region of an mRNA
-
Meijer HA, (2002) Control of eukaryotic protein synthesis by upstream open reading frames in the 5′-untranslated region of an mRNA. Biochem J 367: 1.
-
(2002)
Biochem J
, vol.367
, pp. 1
-
-
Meijer, H.A.1
-
58
-
-
33344471142
-
Regulation of gene expression by alternative untranslated regions
-
Hughes TA, (2006) Regulation of gene expression by alternative untranslated regions. Trends Genet 22: 119-122.
-
(2006)
Trends Genet
, vol.22
, pp. 119-122
-
-
Hughes, T.A.1
-
59
-
-
4344631667
-
Spliced-leader RNA trans splicing in a Chordate, Oikopleura dioica, with a compact genome
-
Ganot P, Kallesøe T, Reinhardt R, Chourrout D, Thompson EM, (2004) Spliced-leader RNA trans splicing in a Chordate, Oikopleura dioica, with a compact genome. Mol Cell Biol 24: 7795-7805.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 7795-7805
-
-
Ganot, P.1
Kallesøe, T.2
Reinhardt, R.3
Chourrout, D.4
Thompson, E.M.5
-
60
-
-
0032487747
-
Effect of short 5′ UTRs on protein synthesis in two biological kingdoms
-
Teilhet M, Rashid MB, Hawk A, Al-Qahtani A, Mensa-Wilmot K, (1998) Effect of short 5′ UTRs on protein synthesis in two biological kingdoms. Gene 222: 91-97.
-
(1998)
Gene
, vol.222
, pp. 91-97
-
-
Teilhet, M.1
Rashid, M.B.2
Hawk, A.3
Al-Qahtani, A.4
Mensa-Wilmot, K.5
-
62
-
-
34548667673
-
C3 and C4 pathways of photosynthetic carbon assimilation in marine diatoms are under genetic, mot environmental, control
-
Roberts K, Granum E, Leegood RC, Raven JA, (2007) C3 and C4 pathways of photosynthetic carbon assimilation in marine diatoms are under genetic, mot environmental, control. Plant Physiol 145: 230-235.
-
(2007)
Plant Physiol
, vol.145
, pp. 230-235
-
-
Roberts, K.1
Granum, E.2
Leegood, R.C.3
Raven, J.A.4
-
63
-
-
33746830079
-
Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features
-
Derelle E, Ferraz C, Rombauts S, Rouzé P, Worden AZ, et al. (2006) Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. PNAS 103: 11647-11652.
-
(2006)
PNAS
, vol.103
, pp. 11647-11652
-
-
Derelle, E.1
Ferraz, C.2
Rombauts, S.3
Rouzé, P.4
Worden, A.Z.5
-
64
-
-
0001517996
-
Photosynthetic carbon fixation in relation to net CO2 uptake
-
Black CC, (1973) Photosynthetic carbon fixation in relation to net CO2 uptake. Annu Rev Plant Physiol 24: 253-286.
-
(1973)
Annu Rev Plant Physiol
, vol.24
, pp. 253-286
-
-
Black, C.C.1
-
66
-
-
34250239977
-
Evolution of enzymes involved in carbon metabolism (phosphoenolpyruvate and ribulose-bisphosphate carboxylases, phosphoenolpyruvate carboxykinase) during the light-induced greening of Euglena gracilis strains Z and ZR
-
Laval-Martin D, Farineau J, Pineau B, Calvayrac R, (1981) Evolution of enzymes involved in carbon metabolism (phosphoenolpyruvate and ribulose-bisphosphate carboxylases, phosphoenolpyruvate carboxykinase) during the light-induced greening of Euglena gracilis strains Z and ZR. Planta 151: 157-167.
-
(1981)
Planta
, vol.151
, pp. 157-167
-
-
Laval-Martin, D.1
Farineau, J.2
Pineau, B.3
Calvayrac, R.4
-
67
-
-
0346794667
-
Paramylon synthesis by Eugelana gracilis photoheterotrophically grown under low O2 pressure
-
Calvayrac R, Laval-Martin D, Briand J, Farineau J, (1981) Paramylon synthesis by Eugelana gracilis photoheterotrophically grown under low O2 pressure. Planta 153: 6-13.
-
(1981)
Planta
, vol.153
, pp. 6-13
-
-
Calvayrac, R.1
Laval-Martin, D.2
Briand, J.3
Farineau, J.4
-
68
-
-
10544231002
-
Heterotrophic carbon dioxide fixation by Euglena: function of phosphoenolpyruvate carbaxylase
-
Peak JG, Peak MJ, (1981) Heterotrophic carbon dioxide fixation by Euglena: function of phosphoenolpyruvate carbaxylase. Biochemica et Biophysica Acta 677: 390-396.
-
(1981)
Biochemica Et Biophysica Acta
, vol.677
, pp. 390-396
-
-
Peak, J.G.1
Peak, M.J.2
-
71
-
-
78650241518
-
Inorganic carbon acquisition by eukaryotic algae: four current questions
-
Raven J, (2010) Inorganic carbon acquisition by eukaryotic algae: four current questions. Photosynthesis Res 106: 123-134.
-
(2010)
Photosynthesis Res
, vol.106
, pp. 123-134
-
-
Raven, J.1
-
73
-
-
51549095861
-
An external delta-carbonic anhydrase in a free-living marine dinoflagellate may circumvent diffusion-limited carbon acquisition
-
Lapointe M, Mackenzie TDB, Morse D, (2008) An external delta-carbonic anhydrase in a free-living marine dinoflagellate may circumvent diffusion-limited carbon acquisition. Plant Physiol 147: 1427-1436.
-
(2008)
Plant Physiol
, vol.147
, pp. 1427-1436
-
-
Lapointe, M.1
Mackenzie, T.D.B.2
Morse, D.3
-
74
-
-
0034718786
-
Photosynthesis: Carbon fix for a diatom
-
Riebesell U, (2000) Photosynthesis: Carbon fix for a diatom. Nature 407: 959-960.
-
(2000)
Nature
, vol.407
, pp. 959-960
-
-
Riebesell, U.1
|