-
1
-
-
4444220955
-
Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA
-
Anderson, F. E., and Swofford, D. L. (2004). Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA. Mol. Phylogenet. Evol. 33, 440-451.
-
(2004)
Mol. Phylogenet. Evol.
, vol.33
, pp. 440-451
-
-
Anderson, F.E.1
Swofford, D.L.2
-
2
-
-
0346729818
-
On the conceptual difficulties in rooting the tree of life
-
Bapteste, E., and Brochier,C. (2004). On the conceptual difficulties in rooting the tree of life. Trends Microbiol. 12, 9-13.
-
(2004)
Trends Microbiol
, vol.12
, pp. 9-13
-
-
Bapteste, E.1
Brochier, C.2
-
3
-
-
12144261269
-
Archaea-like genes for C1-transfer enzymes in Plancto-mycetes: phylogenetic implications of their unexpected presence in this phylum
-
Bauer, M., Lombardot, T., Teeling, H., Ward,N.L.,Amann,R.I.,and Glöck-ner, F. O. (2004). Archaea-like genes for C1-transfer enzymes in Plancto-mycetes: phylogenetic implications of their unexpected presence in this phylum. J. Mol. Evol. 59, 571-586.
-
(2004)
J. Mol. Evol.
, vol.59
, pp. 571-586
-
-
Bauer, M.1
Lombardot, T.2
Teeling, H.3
Ward, N.L.4
Amann, R.I.5
and Glöck-ner, F.O.6
-
4
-
-
20444491634
-
A review of long-branch attraction
-
Bergsten, J. (2005). A review of long-branch attraction. Cladistics 21, 163-193.
-
(2005)
Cladistics
, vol.21
, pp. 163-193
-
-
Bergsten, J.1
-
5
-
-
77950195231
-
Horizontal gene transfer in evolution: facts and challenges
-
Boto, L. (2010). Horizontal gene transfer in evolution: facts and challenges. Proc. Biol. Sci. 277, 819-827.
-
(2010)
Proc. Biol. Sci.
, vol.277
, pp. 819-827
-
-
Boto, L.1
-
6
-
-
0037118037
-
Phylogeny: a non-hyperthermophilic ancestor for bacteria
-
Brochier, C., and Philippe, H. (2002). Phylogeny: a non-hyperthermophilic ancestor for bacteria. Nature 417, 244.
-
(2002)
Nature
, vol.417
, pp. 244
-
-
Brochier, C.1
Philippe, H.2
-
7
-
-
40749116835
-
Phy-logenomics reshuffles the eukary-otic supergroups
-
doi:10.1371/journal.pone.0000790
-
Burki, F., Shalchian-Tabrizi, K., Minge, M., Skjaeveland, A., Nikolaev, S. I., Jakobsen, K. S., et al. (2007). Phy-logenomics reshuffles the eukary-otic supergroups.PLoS ONE 2,e790. doi:10.1371/journal.pone.0000790
-
(2007)
PLoS ONE
, vol.2
-
-
Burki, F.1
Shalchian-Tabrizi, K.2
Minge, M.3
Skjaeveland, A.4
Nikolaev, S.I.5
Jakobsen, K.S.6
-
8
-
-
36448969030
-
Topological variation in single-gene phylogenetic trees
-
Castresana, J. (2007). Topological variation in single-gene phylogenetic trees. Genome Biol. 8, 216.
-
(2007)
Genome Biol
, vol.8
, pp. 216
-
-
Castresana, J.1
-
9
-
-
3042548836
-
The enigmatic planctomycetes may hold a key to the origins of methanogen-esis and methylotrophy
-
Chistoserdova, L., Jenkins, C., Kalyuzh-naya, M. G., Marx, C. J., Lapidus, A., Vorholt, J. A., et al. (2004). The enigmatic planctomycetes may hold a key to the origins of methanogen-esis and methylotrophy. Mol. Biol. Evol. 21, 1234-1241.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1234-1241
-
-
Chistoserdova, L.1
Jenkins, C.2
Kalyuzh-naya, M.G.3
Marx, C.J.4
Lapidus, A.5
Vorholt, J.A.6
-
10
-
-
35148879218
-
Sterol biosynthesis and prokaryotes-to-eukaryotes evolution
-
Chen, L.-L., Wang, G.-Z., and Zhang, H.-Y. (2007). Sterol biosynthesis and prokaryotes-to-eukaryotes evolution. Biochem. Biophys. Res. Com-mun. 363, 885-888.
-
(2007)
Biochem. Biophys. Res. Com-mun.
, vol.363
, pp. 885-888
-
-
Chen, L.-L.1
Wang, G.-Z.2
Zhang, H.-Y.3
-
11
-
-
58149512792
-
The archaebacterial origin of eukaryotes
-
Cox,C.J., Foster,P. G., Hirt,R. P.,Harris, S. R., and Embley, T. M. (2008). The archaebacterial origin of eukaryotes. Proc. Natl. Acad. Sci. U.S.A. 105, 20356-20361.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 20356-20361
-
-
Cox, C.J.1
Foster, P.G.2
Hirt, R.P.3
Harris, S.R.4
Embley, T.M.5
-
12
-
-
65649131928
-
Gene tree discordance, phy-logenetic inference and the multi-species coalescent
-
Degnan, J. H., and Rosenberg, N. A. (2009). Gene tree discordance, phy-logenetic inference and the multi-species coalescent. Trends Ecol. Evol. (Amst.) 24, 332-340.
-
(2009)
Trends Ecol. Evol. (Amst. )
, vol.24
, pp. 332-340
-
-
Degnan, J.H.1
Rosenberg, N.A.2
-
13
-
-
17744394753
-
Phylogenomics and the reconstruction of the tree of life
-
Delsuc,F.,Brinkmann, H.,and Philippe, H. (2005). Phylogenomics and the reconstruction of the tree of life. Nat. Rev. Genet. 6, 361-375.
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 361-375
-
-
Delsuc, F.1
Brinkmann, H.2
and Philippe, H.3
-
14
-
-
78751580323
-
On the last common ancestor and early evolution of eukaryotes: reconstructing the history of mitochon-drial ribosomes
-
Desmond, E., Brochier-Armanet, C., Forterre, P., and Gribaldo, S. (2010). On the last common ancestor and early evolution of eukaryotes: reconstructing the history of mitochon-drial ribosomes. Res. Microbiol. 162, 53-70.
-
(2010)
Res. Microbiol.
, vol.162
, pp. 53-70
-
-
Desmond, E.1
Brochier-Armanet, C.2
Forterre, P.3
Gribaldo, S.4
-
15
-
-
77949881304
-
Phylogenomics of sterol synthesis: insights into the origin, evolution, and diversity of a key eukary-otic feature
-
Desmond, E., and Gribaldo, S. (2009). Phylogenomics of sterol synthesis: insights into the origin, evolution, and diversity of a key eukary-otic feature. Genome Biol. Evol. 1, 364-381.
-
(2009)
Genome Biol. Evol.
, vol.1
, pp. 364-381
-
-
Desmond, E.1
Gribaldo, S.2
-
18
-
-
0142124433
-
The ancestor of the Bacteria domain was a hyper-thermophile
-
Di Giulio, M. (2003). The ancestor of the Bacteria domain was a hyper-thermophile. J. Theor. Biol. 224, 277-283.
-
(2003)
J. Theor. Biol.
, vol.224
, pp. 277-283
-
-
Di Giulio, M.1
-
19
-
-
36849030274
-
Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia
-
Dunfield, P. F., Yuryev, A., Senin, P., Smirnova,A.V., Stott, M. B., Hou, S., et al. (2007). Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature 450, 879-882.
-
(2007)
Nature
, vol.450
, pp. 879-882
-
-
Dunfield, P.F.1
Yuryev, A.2
Senin, P.3
Smirnova, A.V.4
Stott, M.B.5
Hou, S.6
-
20
-
-
2942620063
-
Discovery of the novel candidate phylum "Porib-acteria" in marine sponges
-
Fieseler, L., Horn, M., Wagner, M., and Hentschel, U. (2004). Discovery of the novel candidate phylum "Porib-acteria" in marine sponges. Appl. Environ. Microbiol. 70, 3724-3732.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 3724-3732
-
-
Fieseler, L.1
Horn, M.2
Wagner, M.3
Hentschel, U.4
-
21
-
-
78751584657
-
A new fusion hypothesis for the origin of Eukarya: better than previous ones, but probably also wrong
-
Forterre, P. (2010). A new fusion hypothesis for the origin of Eukarya: better than previous ones, but probably also wrong. Res. Microbiol. 162, 77-91.
-
(2010)
Res. Microbiol.
, vol.162
, pp. 77-91
-
-
Forterre, P.1
-
22
-
-
67651039738
-
The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods
-
Foster, P. G., Cox, C. J., and Emb-ley, T. M. (2009). The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods. Philos. Trans. R. Soc. Lond. B Biol. Sci. 364, 2197-2207.
-
(2009)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.364
, pp. 2197-2207
-
-
Foster, P.G.1
Cox, C.J.2
Emb-ley, T.M.3
-
23
-
-
65349154505
-
Phylogenetic analysis of the triter-pene cyclase protein family in prokaryotes and eukaryotes suggests bidirectional lateral gene transfer
-
Frickey, T., and Kannenberg, E. (2009). Phylogenetic analysis of the triter-pene cyclase protein family in prokaryotes and eukaryotes suggests bidirectional lateral gene transfer. Environ. Microbiol. 11, 1224-1241.
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 1224-1241
-
-
Frickey, T.1
Kannenberg, E.2
-
24
-
-
79956136196
-
Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function
-
Fuerst, J. A., and Sagulenko, E. (2011). Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function. Nat. Rev. Microbiol. 9, 403-413.
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 403-413
-
-
Fuerst, J.A.1
Sagulenko, E.2
-
25
-
-
84875761914
-
Keys to eukaryality: planctomycetes and ancestral evolution of cellular complexity
-
doi:10.3389/fmicb.2012.00167
-
Fuerst, J. A., and Sagulenko, E. (2012). Keys to eukaryality: planctomycetes and ancestral evolution of cellular complexity. Front. Microbiol. 3:167. doi:10.3389/fmicb.2012.00167
-
(2012)
Front. Microbiol.
, vol.3
, pp. 167
-
-
Fuerst, J.A.1
Sagulenko, E.2
-
26
-
-
0036593395
-
Ancient phylogenetic relationships
-
Gribaldo, S., and Philippe, H. (2002). Ancient phylogenetic relationships. Theor. Popul. Biol. 61, 391-408.
-
(2002)
Theor. Popul. Biol.
, vol.61
, pp. 391-408
-
-
Gribaldo, S.1
Philippe, H.2
-
27
-
-
62649113993
-
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukary-otic "supergroups
-
Hampl, V., Hug, L., Leigh, J.W., Dacks, J. B., Lang,B.F., Simpson,A.G.B.,et al. (2009). Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukary-otic "supergroups."Proc. Natl. Acad. Sci. U.S.A. 106, 3859-3864.
-
(2009)
"Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 3859-3864
-
-
Hampl, V.1
Hug, L.2
Leigh, J.W.3
Dacks, J.B.4
Lang, B.F.5
Simpson, A.G.B.6
-
28
-
-
48249105854
-
Complete genome sequence of the extremely aci-dophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia
-
Hou, S., Makarova, K. S., Saw, J. H. W., Senin, P., Ly, B. V., Zhou, Z., et al. (2008). Complete genome sequence of the extremely aci-dophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia. Biol. Direct 3, 26.
-
(2008)
Biol. Direct
, vol.3
, pp. 26
-
-
Hou, S.1
Makarova, K.S.2
Saw, J.H.W.3
Senin, P.4
Ly, B.V.5
Zhou, Z.6
-
29
-
-
11144277878
-
Frequentist properties of Bayesian posterior probabilities of phyloge-netic trees under simple and complex substitution models
-
Huelsenbeck, J., and Rannala, B. (2004). Frequentist properties of Bayesian posterior probabilities of phyloge-netic trees under simple and complex substitution models. Syst. Biol. 53, 904-913.
-
(2004)
Syst. Biol.
, vol.53
, pp. 904-913
-
-
Huelsenbeck, J.1
Rannala, B.2
-
30
-
-
0031084114
-
Is the Felsen-stein zone a fly trap? Syst
-
Huelsenbeck, J. P. (1997). Is the Felsen-stein zone a fly trap? Syst. Biol. 46, 69-74.
-
(1997)
Biol
, vol.46
, pp. 69-74
-
-
Huelsenbeck, J.P.1
-
31
-
-
0036005520
-
Inferring the root of a phylogenetic tree
-
Huelsenbeck, J. P., Bollback, J. P., and Levine, A. M. (2002). Inferring the root of a phylogenetic tree. Syst. Biol. 51, 32-43.
-
(2002)
Syst. Biol.
, vol.51
, pp. 32-43
-
-
Huelsenbeck, J.P.1
Bollback, J.P.2
Levine, A.M.3
-
32
-
-
0030613344
-
Novel anaerobic ultra-microbacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil
-
Janssen, P. H., Schuhmann, A., Mörschel, E., and Rainey, F. A. (1997). Novel anaerobic ultra-microbacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil. Appl. Environ. Microbiol. 63, 1382-1388.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 1382-1388
-
-
Janssen, P.H.1
Schuhmann, A.2
Mörschel, E.3
Rainey, F.A.4
-
33
-
-
33645850710
-
-
Jeffroy, O., Brinkmann, H., Del-suc, F., and Philippe, H. (2006). Phylogenomics: the beginning of incongruence? Trends Genet. 22, 225-231.
-
(2006)
Phylogenomics: the beginning of incongruence? Trends Genet
, vol.22
, pp. 225-231
-
-
Jeffroy, O.1
Brinkmann, H.2
Del-suc, F.3
Philippe, H.4
-
34
-
-
0035346296
-
Phylogenetic analysis of evolutionary relationships of the plancto-mycete division of the domain bacteria based on amino acid sequences of elongation factor Tu
-
Jenkins, C., and Fuerst, J. A. (2001). Phylogenetic analysis of evolutionary relationships of the plancto-mycete division of the domain bacteria based on amino acid sequences of elongation factor Tu. J. Mol. Evol. 52, 405-418.
-
(2001)
J. Mol. Evol.
, vol.52
, pp. 405-418
-
-
Jenkins, C.1
Fuerst, J.A.2
-
35
-
-
0037168668
-
Genes for the cytoskeletal protein tubulin in the bacterial genus Prosthecobac-ter
-
Jenkins, C., Samudrala, R., Anderson, I., Hedlund, B. P., Petroni, G., Michailova, N., et al. (2002). Genes for the cytoskeletal protein tubulin in the bacterial genus Prosthecobac-ter. Proc. Natl. Acad. Sci. U.S.A. 99, 17049-17054.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 17049-17054
-
-
Jenkins, C.1
Samudrala, R.2
Anderson, I.3
Hedlund, B.P.4
Petroni, G.5
Michailova, N.6
-
36
-
-
21144441411
-
Analysis of gene islands involved in methanopterin-linked C1 transfer reactions reveals new functions and provides evolutionary insights
-
Kalyuzhnaya, M. G., Korotkova, N., Crowther, G., Marx, C. J., Lid-strom, M. E., and Chistoserdova, L. (2005). Analysis of gene islands involved in methanopterin-linked C1 transfer reactions reveals new functions and provides evolutionary insights. J. Bacteriol. 187, 4607-4614.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 4607-4614
-
-
Kalyuzhnaya, M.G.1
Korotkova, N.2
Crowther, G.3
Marx, C.J.4
Lid-strom, M.E.5
Chistoserdova, L.6
-
37
-
-
79952279114
-
Genome-wide influence of indel substitutions on evolution of bacteria of the PVC superphylum, revealed using a novel computational method
-
Kamneva, O. K., Liberles, D. A., and Ward, N. L. (2010). Genome-wide influence of indel substitutions on evolution of bacteria of the PVC superphylum, revealed using a novel computational method. Genome Biol. Evol. 2, 870-886.
-
(2010)
Genome Biol. Evol.
, vol.2
, pp. 870-886
-
-
Kamneva, O.K.1
Liberles, D.A.2
Ward, N.L.3
-
38
-
-
80052338122
-
Autotrophic methanotro-phy in Verrucomicrobia: Methy-lacidiphilum fumariolicum SolV uses the Calvin-Benson-Bassham cycle for carbon dioxide fixation
-
Khadem, A. F., Pol, A., Wieczorek, A., Mohammadi, S. S., Francoijs, K.-J., Stunnenberg, H. G., et al. (2011). Autotrophic methanotro-phy in Verrucomicrobia: Methy-lacidiphilum fumariolicum SolV uses the Calvin-Benson-Bassham cycle for carbon dioxide fixation. J. Bacteriol. 193, 4438-4446.
-
(2011)
J. Bacteriol.
, vol.193
, pp. 4438-4446
-
-
Khadem, A.F.1
Pol, A.2
Wieczorek, A.3
Mohammadi, S.S.4
Francoijs, K.-J.5
Stunnenberg, H.G.6
-
39
-
-
44649184070
-
A mixed branch length model of heterotachy improves phy-logenetic accuracy
-
Kolaczkowski, B., and Thornton, J. W. (2008). A mixed branch length model of heterotachy improves phy-logenetic accuracy. Mol. Biol. Evol. 25, 1054-1066.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1054-1066
-
-
Kolaczkowski, B.1
Thornton, J.W.2
-
40
-
-
67651064683
-
Genomebeginnings:rooting the tree of life
-
Lake, J. A., Skophammer, R. G., Her-bold, C. W., and Servin, J. A. (2009). Genomebeginnings:rooting the tree of life. Philos. Trans. R. Soc. Lond. B Biol. Sci. 364, 2177-2185.
-
(2009)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.364
, pp. 2177-2185
-
-
Lake, J.A.1
Skophammer, R.G.2
Her-bold, C.W.3
Servin, J.A.4
-
41
-
-
84864598680
-
Origin of land plants revisited in the light of sequence contamination and missing data
-
Laurin-Lemay, S., Brinkmann, H., and Philippe, H. (2012). Origin of land plants revisited in the light of sequence contamination and missing data. Curr. Biol. 22, R593-R594.
-
(2012)
Curr. Biol.
, vol.22
-
-
Laurin-Lemay, S.1
Brinkmann, H.2
Philippe, H.3
-
42
-
-
46249095233
-
Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis
-
Löytynoja, A., and Goldman, N. (2008). Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis. Science 320, 1632-1635.
-
(2008)
Science
, vol.320
, pp. 1632-1635
-
-
Löytynoja, A.1
Goldman, N.2
-
43
-
-
15244352063
-
Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation
-
doi:10.1186/1471-2148-5-8
-
Mar, J. C., Harlow, T. J., and Ragan, M. A. (2005). Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation. BMC Evol. Biol. 5, 8. doi:10.1186/1471-2148-5-8
-
(2005)
BMC Evol. Biol.
, vol.5
, pp. 8
-
-
Mar, J.C.1
Harlow, T.J.2
Ragan, M.A.3
-
44
-
-
78649704686
-
Environmental, genomic and tax-onomic perspectives on methan-otrophic Verrucomicrobia
-
Op den Camp, H. J. M., Islam, T., Stott, M. B., Harhangi, H. R., Hynes, A., Schouten, S., et al. (2009). Environmental, genomic and tax-onomic perspectives on methan-otrophic Verrucomicrobia. Environ. Microbiol. Rep. 1, 293-306.
-
(2009)
Environ. Microbiol. Rep.
, vol.1
, pp. 293-306
-
-
Op den Camp, H.J.M.1
Islam, T.2
Stott, M.B.3
Harhangi, H.R.4
Hynes, A.5
Schouten, S.6
-
45
-
-
0347994912
-
Phylogenetic and biochemical evidence for sterol synthesis in the bacterium Gemmata obscuriglobus
-
Pearson, A., Budin, M., and Brocks, J. J. (2003). Phylogenetic and biochemical evidence for sterol synthesis in the bacterium Gemmata obscuriglobus. Proc. Natl. Acad. Sci. U.S.A. 100, 15352-15357.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 15352-15357
-
-
Pearson, A.1
Budin, M.2
Brocks, J.J.3
-
46
-
-
79953716259
-
Resolving difficult phylogenetic questions: why more sequences are not enough
-
doi:10.1371/journal.pbio. 1000602
-
Philippe, H., Brinkmann, H., Lavrov, D. V., Littlewood, D. T. J., Manuel, M., Wörheide, G., et al. (2011). Resolving difficult phylogenetic questions: why more sequences are not enough. PLoS Biol. 9, e1000602. doi:10.1371/journal.pbio. 1000602
-
(2011)
PLoS Biol
, vol.9
-
-
Philippe, H.1
Brinkmann, H.2
Lavrov, D.V.3
Littlewood, D.T.J.4
Manuel, M.5
Wörheide, G.6
-
47
-
-
84855170213
-
Microtubules in bacteria: ancient tubulins build a five-protofilament homolog of the eukaryotic cytoskele-ton
-
doi:10.1371/journal.pbio.1001213
-
Pilhofer, M.,Ladinsky,M.S.,McDowall, A. W., Petroni, G., and Jensen, G. J. (2011). Microtubules in bacteria: ancient tubulins build a five-protofilament homolog of the eukaryotic cytoskele-ton. PLoS Biol. 9, e1001213. doi:10.1371/journal.pbio.1001213
-
(2011)
PLoS Biol
, vol.9
-
-
Pilhofer, M.1
Ladinsky, M.S.2
McDowall, A.W.3
Petroni, G.4
Jensen, G.J.5
-
48
-
-
42549084353
-
Characterization andevo-lution of cell division and cell wall synthesis genes in the bacterial phyla Verrucomicrobia, Lentisphaerae, Chlamydiae, and Planctomycetes and phylogenetic comparison with rRNA genes
-
Pilhofer, M., Rappl, K., Eckl, C., Bauer, A. P., Ludwig, W., Schleifer, K.-H., et al. (2008). Characterization andevo-lution of cell division and cell wall synthesis genes in the bacterial phyla Verrucomicrobia, Lentisphaerae, Chlamydiae, and Planctomycetes and phylogenetic comparison with rRNA genes. J. Bacteriol. 190, 3192-3202.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 3192-3202
-
-
Pilhofer, M.1
Rappl, K.2
Eckl, C.3
Bauer, A.P.4
Ludwig, W.5
Schleifer, K.-H.6
-
49
-
-
36949016622
-
Methan-otrophy below pH 1 by a new Ver-rucomicrobia species
-
Pol, A., Heijmans, K., Harhangi, H. R., Tedesco, D., Jetten, M. S. M., and Op den Camp, H. J. M. (2007). Methan-otrophy below pH 1 by a new Ver-rucomicrobia species. Nature 450, 874-878.
-
(2007)
Nature
, vol.450
, pp. 874-878
-
-
Pol, A.1
Heijmans, K.2
Harhangi, H.R.3
Tedesco, D.4
Jetten, M.S.M.5
Op den Camp, H.J.M.6
-
50
-
-
84855268902
-
-
doi:10.1186/1471-2164-13-5
-
Prosdocimi, F., Linard, B., Pontarotti, P., Poch, O., and Thompson, J. D. (2012). Controversies in modern evolutionary biology: the imperative for error detection and quality control. BMC Genomics 13, 5. doi:10.1186/1471-2164-13-5
-
(2012)
Controversies in modern evolutionary biology: the imperative for error detection and quality control. BMC Genomics
, vol.13
, pp. 5
-
-
Prosdocimi, F.1
Linard, B.2
Pontarotti, P.3
Poch, O.4
Thompson, J.D.5
-
51
-
-
80053935206
-
Transitional forms between the three domains of life and evolutionary implications
-
Reynaud,E. G., and Devos,D. P. (2011). Transitional forms between the three domains of life and evolutionary implications. Proc. Biol. Sci. 278, 3321-3328.
-
(2011)
Proc. Biol. Sci.
, vol.278
, pp. 3321-3328
-
-
Reynaud, E.G.1
Devos, D.P.2
-
52
-
-
60349108359
-
Evolution: revisiting the root of the eukaryote tree
-
Roger, A. J., and Simpson, A. G. B. (2009). Evolution: revisiting the root of the eukaryote tree. Curr. Biol. 19, R165-R167.
-
(2009)
Curr. Biol.
, vol.19
-
-
Roger, A.J.1
Simpson, A.G.B.2
-
53
-
-
33751039720
-
Bushes in the tree of life
-
doi:10.1371/journal.pbio.0040352
-
Rokas, A., and Carroll, S. B. (2006). Bushes in the tree of life. PLoS Biol. 4, e352. doi:10.1371/journal.pbio.0040352
-
(2006)
PLoS Biol
, vol.4
-
-
Rokas, A.1
Carroll, S.B.2
-
54
-
-
78651361594
-
Site-specific time heterogeneity of the substitution process and its impact on phylogenetic inference
-
doi:10.1186/1471-2148-11-17
-
Roure, B., and Philippe, H. (2011). Site-specific time heterogeneity of the substitution process and its impact on phylogenetic inference. BMC Evol. Biol. 11, 17. doi:10.1186/1471-2148-11-17
-
(2011)
BMC Evol. Biol.
, vol.11
, pp. 17
-
-
Roure, B.1
Philippe, H.2
-
55
-
-
75749127849
-
The compartmentalized bacteria of the planctomycetes-verrucomicrobia-chlamydiae superphylum have membrane coatlike proteins
-
doi:10.1371/journal.pbio.1000281
-
Santarella-Mellwig, R., Franke, J., Jaedicke, A., Gorjanacz, M., Bauer, U., Budd, A., et al. (2010). The compartmentalized bacteria of the planctomycetes-verrucomicrobia-chlamydiae superphylum have membrane coatlike proteins. PLoS Biol. 8, e1000281. doi:10.1371/journal.pbio.1000281
-
(2010)
PLoS Biol
, vol.8
-
-
Santarella-Mellwig, R.1
Franke, J.2
Jaedicke, A.3
Gorjanacz, M.4
Bauer, U.5
Budd, A.6
-
56
-
-
77950837347
-
Phylogenetic tree reconstruction accuracy and model fit when proportions of variable sites change across the tree
-
Shavit Grievink, L., Penny, D., Hendy, M. D., and Holland, B. R. (2010). Phylogenetic tree reconstruction accuracy and model fit when proportions of variable sites change across the tree. Syst. Biol. 59, 288-297.
-
(2010)
Syst. Biol.
, vol.59
, pp. 288-297
-
-
Shavit Grievink, L.1
Penny, D.2
Hendy, M.D.3
Holland, B.R.4
-
57
-
-
36249021315
-
Genome-wide experimental determination of barriers to horizontal gene transfer
-
Sorek, R., Zhu, Y., Creevey, C. J., Fran-cino, M. P., Bork, P., and Rubin, E. M. (2007). Genome-wide experimental determination of barriers to horizontal gene transfer. Science 318, 1449-1452.
-
(2007)
Science
, vol.318
, pp. 1449-1452
-
-
Sorek, R.1
Zhu, Y.2
Creevey, C.J.3
Fran-cino, M.P.4
Bork, P.5
Rubin, E.M.6
-
58
-
-
0021273617
-
Mol ecular genetic evidence for early evolutionary origin of budding peptidoglycan-less eubacteria
-
Stackebrandt, E., Ludwig, W., Schubert, W., Klink, F., Schlesner, H., Roggentin, T., et al. (1984). Mol ecular genetic evidence for early evolutionary origin of budding peptidoglycan-less eubacteria. Nature 307, 735-737.
-
(1984)
Nature
, vol.307
, pp. 735-737
-
-
Stackebrandt, E.1
Ludwig, W.2
Schubert, W.3
Klink, F.4
Schlesner, H.5
Roggentin, T.6
-
59
-
-
84866458802
-
Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees
-
Stolzer, M., Lai, H., Xu, M., Sathaye, D., Vernot, B., and Durand, D. (2012). Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees. Bioinformatics 28, i409-i415.
-
(2012)
Bioinformatics
, vol.28
-
-
Stolzer, M.1
Lai, H.2
Xu, M.3
Sathaye, D.4
Vernot, B.5
Durand, D.6
-
60
-
-
0001336205
-
-
in Molecular Systematics, Second Edition, eds D. M. Hillis, C. Moritz and B. K. Mable (Sunderland: Sinauer Associates, Inc.)
-
Swofford, D. L., Olsen, G. J., Wad-dell, P. J., and Hillis, D. M. (1996). "Phylogenetic inference," in Molecular Systematics, Second Edition, eds D. M. Hillis, C. Moritz and B. K. Mable (Sunderland: Sinauer Associates, Inc.), 407-514.
-
(1996)
Phylogenetic inference
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.J.2
Wad-dell, P.J.3
Hillis, D.M.4
-
61
-
-
2942668180
-
Evaluation of the phyloge-netic position of the planctomycete Rhodopirellula baltica SH 1 by means of concatenated ribosomal protein sequences
-
Teeling, H., Lombardot, T., Bauer, M., Ludwig, W., and Glöckner, F. O. (2004). Evaluation of the phyloge-netic position of the planctomycete "Rhodopirellula baltica" SH 1 by means of concatenated ribosomal protein sequences, DNA-directed RNA polymerase subunit sequences and whole genome trees. Int. J. Syst. Evol. Microbiol. 54, 791-801.
-
(2004)
DNA-directed RNA polymerase subunit sequences and whole genome trees. Int. J. Syst. Evol. Microbiol.
, vol.54
, pp. 791-801
-
-
Teeling, H.1
Lombardot, T.2
Bauer, M.3
Ludwig, W.4
Glöckner, F.O.5
-
62
-
-
84862562185
-
An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin
-
Thiergart, T., Landan, G., Schenk, M., Dagan, T., and Martin, W. F. (2012). An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin. Genome Biol. Evol. 4, 466-485.
-
(2012)
Genome Biol. Evol.
, vol.4
, pp. 466-485
-
-
Thiergart, T.1
Landan, G.2
Schenk, M.3
Dagan, T.4
Martin, W.F.5
-
63
-
-
24644471985
-
MtdC, a novel class of methylene tetrahy-dromethanopterin dehydrogenases
-
Vorholt,J.A.,Kalyuzhnaya,M.G.,Hage-meier, C. H., Lidstrom, M. E., and Chistoserdova, L. (2005). MtdC, a novel class of methylene tetrahy-dromethanopterin dehydrogenases. J. Bacteriol. 187, 6069-6074.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 6069-6074
-
-
Vorholt, J.A.1
Kalyuzhnaya, M.G.2
Hage-meier, C.H.3
Lidstrom, M.E.4
Chistoserdova, L.5
-
64
-
-
33744927902
-
The Planctomycetes, Verrucomi-crobia
-
Wagner, M., and Horn, M. (2006). The Planctomycetes, Verrucomi-crobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance. Curr. Opin. Biotechnol. 17, 241-249.
-
(2006)
Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance. Curr. Opin. Biotechnol.
, vol.17
, pp. 241-249
-
-
Wagner, M.1
Horn, M.2
-
65
-
-
0034526970
-
Comparative phylogenetic analyses of members of the order Planctomyc-etales and the division Verrucomi-crobia: 23S rRNA gene sequence analysis supports the 16S rRNA gene sequence-derived phylogeny
-
Ward, N. L., Rainey, F. A., Hedlund, B. P., Staley, J. T., Ludwig, W., and Stackebrandt, E. (2000). Comparative phylogenetic analyses of members of the order Planctomyc-etales and the division Verrucomi-crobia: 23S rRNA gene sequence analysis supports the 16S rRNA gene sequence-derived phylogeny. Int. J. Syst. Evol. Microbiol. 50(Pt 6), 1965-1972.
-
(2000)
Int. J. Syst. Evol. Microbiol.
, vol.50
, Issue.PART 6
, pp. 1965-1972
-
-
Ward, N.L.1
Rainey, F.A.2
Hedlund, B.P.3
Staley, J.T.4
Ludwig, W.5
Stackebrandt, E.6
-
66
-
-
0025300402
-
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya
-
Woese, C. R., Kandler, O., and Wheelis, M. L. (1990). Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. U.S.A. 87, 4576-4579.
-
(1990)
Proc. Natl. Acad. Sci. U. S. A.
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
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